From 221b4471a4f8b00dae8d12acc17c9f2d9dd23f31 Mon Sep 17 00:00:00 2001
From: Andrea Bagnacani <andrea.bagnacani@limbus-medtec.com>
Date: Sat, 22 Nov 2025 20:55:06 +0100
Subject: [PATCH] Bump version of module sequali to 1.0.2

---
 modules/nf-core/sequali/environment.yml       |  2 +-
 modules/nf-core/sequali/main.nf               |  4 +-
 .../nf-core/sequali/tests/main.nf.test.snap   | 54 +++++++++----------
 3 files changed, 30 insertions(+), 30 deletions(-)

diff --git a/modules/nf-core/sequali/environment.yml b/modules/nf-core/sequali/environment.yml
index b712a24fdd53..fbe2ae2b189a 100644
--- a/modules/nf-core/sequali/environment.yml
+++ b/modules/nf-core/sequali/environment.yml
@@ -4,4 +4,4 @@ channels:
   - conda-forge
   - bioconda
 dependencies:
-  - bioconda::sequali=0.12.0
+  - bioconda::sequali=1.0.2
diff --git a/modules/nf-core/sequali/main.nf b/modules/nf-core/sequali/main.nf
index 803eff8970fa..40ca388d9704 100644
--- a/modules/nf-core/sequali/main.nf
+++ b/modules/nf-core/sequali/main.nf
@@ -4,8 +4,8 @@ process SEQUALI {
 
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/9e/9ed3be5b0d3beb64807ec93b25a80b55abdcdffe684114d12ddef78461dd64e9/data':
-        'community.wave.seqera.io/library/sequali:0.12.0--07485bec824d914a' }"
+        'https://depot.galaxyproject.org/singularity/sequali:1.0.2--py312h0fa9677_0':
+        'biocontainers/sequali:1.0.2--py312h0fa9677_0' }"
 
     input:
 
diff --git a/modules/nf-core/sequali/tests/main.nf.test.snap b/modules/nf-core/sequali/tests/main.nf.test.snap
index 441c352bea48..40176562467f 100644
--- a/modules/nf-core/sequali/tests/main.nf.test.snap
+++ b/modules/nf-core/sequali/tests/main.nf.test.snap
@@ -23,7 +23,7 @@
                     ]
                 ],
                 "2": [
-                    "versions.yml:md5,afd9522ef20d5fe27e0b6aab541c7c30"
+                    "versions.yml:md5,e696d955faf33f1856ba120f1016ac7c"
                 ],
                 "html": [
                     [
@@ -44,15 +44,15 @@
                     ]
                 ],
                 "versions": [
-                    "versions.yml:md5,afd9522ef20d5fe27e0b6aab541c7c30"
+                    "versions.yml:md5,e696d955faf33f1856ba120f1016ac7c"
                 ]
             }
         ],
         "meta": {
-            "nf-test": "0.9.1",
-            "nextflow": "24.10.0"
+            "nf-test": "0.9.2",
+            "nextflow": "25.10.0"
         },
-        "timestamp": "2024-10-31T14:30:30.653577"
+        "timestamp": "2025-11-22T20:23:29.734838268"
     },
     "sarscov2 - fastq paired-end [sequali]": {
         "content": [
@@ -71,14 +71,14 @@
                 "read_pair_info": "Read 1"
             },
             [
-                "versions.yml:md5,afd9522ef20d5fe27e0b6aab541c7c30"
+                "versions.yml:md5,e696d955faf33f1856ba120f1016ac7c"
             ]
         ],
         "meta": {
-            "nf-test": "0.9.1",
-            "nextflow": "24.10.0"
+            "nf-test": "0.9.2",
+            "nextflow": "25.10.0"
         },
-        "timestamp": "2024-10-31T14:29:34.748364"
+        "timestamp": "2025-11-22T20:22:35.685614634"
     },
     "sarscov2 - fastq single-end - stub[sequali]": {
         "content": [
@@ -104,7 +104,7 @@
                     ]
                 ],
                 "2": [
-                    "versions.yml:md5,afd9522ef20d5fe27e0b6aab541c7c30"
+                    "versions.yml:md5,e696d955faf33f1856ba120f1016ac7c"
                 ],
                 "html": [
                     [
@@ -125,15 +125,15 @@
                     ]
                 ],
                 "versions": [
-                    "versions.yml:md5,afd9522ef20d5fe27e0b6aab541c7c30"
+                    "versions.yml:md5,e696d955faf33f1856ba120f1016ac7c"
                 ]
             }
         ],
         "meta": {
-            "nf-test": "0.9.1",
-            "nextflow": "24.10.0"
+            "nf-test": "0.9.2",
+            "nextflow": "25.10.0"
         },
-        "timestamp": "2024-10-31T14:30:06.387152"
+        "timestamp": "2025-11-22T20:23:02.415164809"
     },
     "sarscov2 - fastq single-end [sequali]": {
         "content": [
@@ -152,14 +152,14 @@
                 "read_pair_info": null
             },
             [
-                "versions.yml:md5,afd9522ef20d5fe27e0b6aab541c7c30"
+                "versions.yml:md5,e696d955faf33f1856ba120f1016ac7c"
             ]
         ],
         "meta": {
-            "nf-test": "0.9.1",
-            "nextflow": "24.10.0"
+            "nf-test": "0.9.2",
+            "nextflow": "25.10.0"
         },
-        "timestamp": "2024-10-31T14:28:42.093895"
+        "timestamp": "2025-11-22T20:22:16.415335398"
     },
     "sarscov2 - unaligned bam [sequali]": {
         "content": [
@@ -178,14 +178,14 @@
                 "read_pair_info": null
             },
             [
-                "versions.yml:md5,afd9522ef20d5fe27e0b6aab541c7c30"
+                "versions.yml:md5,e696d955faf33f1856ba120f1016ac7c"
             ]
         ],
         "meta": {
-            "nf-test": "0.9.1",
-            "nextflow": "24.10.0"
+            "nf-test": "0.9.2",
+            "nextflow": "25.10.0"
         },
-        "timestamp": "2024-10-31T14:29:54.657233"
+        "timestamp": "2025-11-22T20:22:49.020502498"
     },
     "sarscov2 - fastq paired-end - stub[sequali]": {
         "content": [
@@ -211,7 +211,7 @@
                     ]
                 ],
                 "2": [
-                    "versions.yml:md5,afd9522ef20d5fe27e0b6aab541c7c30"
+                    "versions.yml:md5,e696d955faf33f1856ba120f1016ac7c"
                 ],
                 "html": [
                     [
@@ -232,14 +232,14 @@
                     ]
                 ],
                 "versions": [
-                    "versions.yml:md5,afd9522ef20d5fe27e0b6aab541c7c30"
+                    "versions.yml:md5,e696d955faf33f1856ba120f1016ac7c"
                 ]
             }
         ],
         "meta": {
-            "nf-test": "0.9.1",
-            "nextflow": "24.10.0"
+            "nf-test": "0.9.2",
+            "nextflow": "25.10.0"
         },
-        "timestamp": "2024-10-31T14:30:18.654267"
+        "timestamp": "2025-11-22T20:23:17.082885059"
     }
 }
\ No newline at end of file