diff --git a/package.json b/package.json
index b9c2d85fd..1f2df2be4 100644
--- a/package.json
+++ b/package.json
@@ -1282,6 +1282,64 @@
           "type": "boolean",
           "default": true,
           "description": "Specify whether to show the overview page immediately after installing the extension."
+        },
+        "mdb.mcp.apiBaseUrl": {
+          "type": "string",
+          "default": "https://cloud.mongodb.com/",
+          "description": "API URL of MongoDB Atlas to be used by MongoDB MCP server for enabling Atlas tools. When empty, it defaults to 'https://cloud.mongodb.com/'. Only change this if you're using a custom Atlas deployment."
+        },
+        "mdb.mcp.apiClientId": {
+          "type": "string",
+          "default": "",
+          "description": "Atlas API client ID for authenticating against Atlas API. Use a Service Account (https://www.mongodb.com/docs/atlas/configure-api-access/#grant-programmatic-access-to-an-organization) for programmatic access to Atlas APIs. Required for enabling Atlas tools in MongoDB MCP server. Store this securely and do not commit to version control."
+        },
+        "mdb.mcp.apiClientSecret": {
+          "type": "string",
+          "default": "",
+          "description": "Atlas API client secret for authenticating against Atlas API. Use a Service Account (https://www.mongodb.com/docs/atlas/configure-api-access/#grant-programmatic-access-to-an-organization) for programmatic access to Atlas APIs. Required for enabling Atlas tools in MongoDB MCP server. Store this securely and do not commit to version control."
+        },
+        "mdb.mcp.disabledTools": {
+          "type": "array",
+          "items": {
+            "type": "string"
+          },
+          "default": [],
+          "description": "Tool names, operation types (create, update, delete, read, metadata), and/or categories (atlas, mongodb) to disable in MongoDB MCP server."
+        },
+        "mdb.mcp.readOnly": {
+          "type": "boolean",
+          "default": false,
+          "description": "When set to true, MongoDB MCP server will only allow read, connect, and metadata operation types, disabling create/update/delete operations."
+        },
+        "mdb.mcp.indexCheck": {
+          "type": "boolean",
+          "default": false,
+          "description": "When set to true, MongoDB MCP server enforces that query operations must use an index, rejecting queries that perform a collection scan. This helps prevent performance issues in production environments."
+        },
+        "mdb.mcp.server": {
+          "type": "string",
+          "enum": [
+            "enabled",
+            "disabled",
+            "ask"
+          ],
+          "default": "ask",
+          "description": "Controls whether MongoDB MCP server starts automatically with the extension or if a permission is requested when connecting to a new connection. If automatic startup is disabled, the server can still be started using the 'MongoDB: Start MCP Server' command."
+        },
+        "mdb.mcp.exportsPath": {
+          "type": "string",
+          "default": "",
+          "description": "The directory where the MongoDB MCP server will export the data to when using the export tool. Ensure the path is writable or leave empty to use the default path."
+        },
+        "mdb.mcp.exportTimeoutMs": {
+          "type": "number",
+          "default": 300000,
+          "description": "The time in milliseconds after which the MongoDB MCP server will expire the export. Default is 5 minutes (300000ms)."
+        },
+        "mdb.mcp.exportCleanupIntervalMs": {
+          "type": "number",
+          "default": 120000,
+          "description": "Controls how often the MongoDB MCP server runs the export cleanup process to remove expired files (in milliseconds). Default is 2 minutes (120000ms)."
         }
       }
     },