diff --git a/pkg/result/processors/fixer.go b/pkg/result/processors/fixer.go
index 17f519e32ba1..88d8d23fc3da 100644
--- a/pkg/result/processors/fixer.go
+++ b/pkg/result/processors/fixer.go
@@ -57,7 +57,12 @@ func (f Fixer) Process(issues []result.Issue) []result.Issue {
 	for file, issuesToFix := range issuesToFixPerFile {
 		var err error
 		f.sw.TrackStage("all", func() {
-			err = f.fixIssuesInFile(file, issuesToFix)
+			fileWithoutPathPrefix := file
+
+			if f.cfg.Output.PathPrefix != "" {
+				fileWithoutPathPrefix = strings.TrimPrefix(fileWithoutPathPrefix, f.cfg.Output.PathPrefix+string(filepath.Separator))
+			}
+			err = f.fixIssuesInFile(fileWithoutPathPrefix, issuesToFix)
 		})
 		if err != nil {
 			f.log.Errorf("Failed to fix issues in file %s: %s", file, err)
diff --git a/test/fix_test.go b/test/fix_test.go
index 97cde38834b0..1c6ee7ec8e76 100644
--- a/test/fix_test.go
+++ b/test/fix_test.go
@@ -44,7 +44,7 @@ func TestFix(t *testing.T) {
 
 			args := []string{
 				"--disable-all", "--print-issued-lines=false", "--print-linter-name=false", "--out-format=line-number",
-				"--allow-parallel-runners", "--fix",
+				"--allow-parallel-runners", "--fix", "--path-prefix=mock",
 				input,
 			}
 			rc := extractRunContextFromComments(t, input)