diff --git a/server/embedding_generation/local.py b/server/embedding_generation/local.py new file mode 100644 index 0000000..468126a --- /dev/null +++ b/server/embedding_generation/local.py @@ -0,0 +1,11 @@ +from embedding_generation.models import EmbeddingGenerator, EmbeddingModel +from sentence_transformers import SentenceTransformer + + +class SentenceTransformerEmbedding(EmbeddingGenerator): + def __init__(self, model: EmbeddingModel): + self.model_instance = SentenceTransformer(model.name) + self.dimensions = model.dimensions + + def encode(self, text_segments: list[str]) -> list[list[float]]: + return self.model_instance.encode(text_segments) diff --git a/server/embedding_generation/models.py b/server/embedding_generation/models.py new file mode 100644 index 0000000..067a85f --- /dev/null +++ b/server/embedding_generation/models.py @@ -0,0 +1,18 @@ +from collections import namedtuple +from typing import Protocol + +EmbeddingModel = namedtuple('EmbeddingModel', 'name dimensions') + + +class EmbeddingGenerator(Protocol): + dimensions: int + + def __init__(self, model: EmbeddingModel) -> None: + ... + + def encode(self, text_segments: list[str]) -> list[list[float]]: + ... + +ALL_MINILM_L6_V2 = EmbeddingModel("sentence-transformers/all-MiniLM-L6-v2", 384) + + diff --git a/server/embedding_generation/services.py b/server/embedding_generation/services.py new file mode 100644 index 0000000..82ec26e --- /dev/null +++ b/server/embedding_generation/services.py @@ -0,0 +1,17 @@ +from embedding_generation.models import EmbeddingGenerator, EmbeddingModel + +import requests + + +class HuggingfaceInferenceEndpoingEmbedding(EmbeddingGenerator): + def __init__(self, model: EmbeddingModel, hf_token): + self.url = f'https://api-inference.huggingface.co/pipeline/feature-extraction/{model.name}' + self.headers = {"Authorization": f"Bearer {hf_token}"} + self.dimensions = model.dimensions + + def query(self, text_segments): + response = requests.post(self.url, headers=self.headers, json={"inputs": text_segments, "options":{"wait_for_model":True}}) + return response.json() + + def encode(self, text_segments: list[str]) -> list[list[float]]: + return self.query(text_segments) diff --git a/server/llm/llm.py b/server/llm/llm.py index 3a525cd..2f03afa 100644 --- a/server/llm/llm.py +++ b/server/llm/llm.py @@ -1,20 +1,13 @@ from models.models import Document as PsychicDocument, LLM -from typing import List, Any, Optional -import uuid -from langchain.embeddings.huggingface import HuggingFaceEmbeddings +from typing import List, Optional from langchain.llms import GPT4All, LlamaCpp import os import requests -import json from langchain.callbacks.streaming_stdout import StreamingStdOutCallbackHandler from langchain.chains.question_answering import load_qa_chain from langchain.docstore.document import Document import openai -embeddings = HuggingFaceEmbeddings( - model_name=os.environ.get("embeddings_model") or "all-MiniLM-L6-v2" -) -embeddings_dimension = 384 base_url = os.environ.get("LLM_URL") or "http://localhost" diff --git a/server/models/models.py b/server/models/models.py index 0bc941f..5cff412 100644 --- a/server/models/models.py +++ b/server/models/models.py @@ -29,7 +29,7 @@ async def query(self, query: str) -> List[Document]: class LLM(BaseModel, ABC): @abstractmethod - def ask(self, documents: List[str], question: str) -> List[List[float]]: + def ask(self, documents: List[str], question: str) -> str: pass diff --git a/server/poetry.lock b/server/poetry.lock index 4012da4..c3b5306 100644 --- a/server/poetry.lock +++ b/server/poetry.lock @@ -2,98 +2,98 @@ [[package]] name = "aiohttp" -version = "3.8.4" +version = "3.8.5" description = "Async http client/server framework (asyncio)" optional = false python-versions = ">=3.6" files = [ - {file = "aiohttp-3.8.4-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:5ce45967538fb747370308d3145aa68a074bdecb4f3a300869590f725ced69c1"}, - {file = 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"torchaudio", "torchvision"] docs-specific = ["hf-doc-builder"] fairscale = ["fairscale (>0.3)"] -flax = ["flax (>=0.4.1,<=0.6.9)", "jax (>=0.2.8,!=0.3.2,<=0.3.6)", "jaxlib (>=0.1.65,<=0.3.6)", "optax (>=0.0.8,<=0.1.4)"] +flax = ["flax (>=0.4.1,<=0.7.0)", "jax (>=0.4.1,<=0.4.13)", "jaxlib (>=0.4.1,<=0.4.13)", "optax (>=0.0.8,<=0.1.4)"] flax-speech = ["kenlm", "librosa", "phonemizer", "pyctcdecode (>=0.4.0)"] ftfy = ["ftfy"] integrations = ["optuna", "ray[tune]", "sigopt"] @@ -3598,33 +3508,33 @@ quality = ["GitPython (<3.1.19)", "black (>=23.1,<24.0)", "datasets (!=2.5.0)", ray = ["ray[tune]"] retrieval = ["datasets (!=2.5.0)", "faiss-cpu"] sagemaker = ["sagemaker (>=2.31.0)"] -sentencepiece = ["protobuf (<=3.20.3)", "sentencepiece (>=0.1.91,!=0.1.92)"] -serving = ["fastapi", "pydantic", "starlette", "uvicorn"] +sentencepiece = ["protobuf", "sentencepiece (>=0.1.91,!=0.1.92)"] +serving = ["fastapi", "pydantic (<2)", "starlette", "uvicorn"] sigopt = ["sigopt"] sklearn = ["scikit-learn"] speech = ["kenlm", "librosa", "phonemizer", "pyctcdecode (>=0.4.0)", "torchaudio"] -testing = ["GitPython (<3.1.19)", "beautifulsoup4", "black (>=23.1,<24.0)", "cookiecutter (==1.7.3)", "datasets (!=2.5.0)", "dill (<0.3.5)", "evaluate (>=0.2.0)", "faiss-cpu", "hf-doc-builder (>=0.3.0)", "nltk", "parameterized", "protobuf (<=3.20.3)", "psutil", "pytest (>=7.2.0)", "pytest-timeout", "pytest-xdist", "rjieba", "rouge-score (!=0.0.7,!=0.0.8,!=0.1,!=0.1.1)", "sacrebleu (>=1.4.12,<2.0.0)", "sacremoses", "timeout-decorator"] -tf = ["keras-nlp (>=0.3.1)", "onnxconverter-common", "tensorflow (>=2.4,<2.13)", "tensorflow-text (<2.13)", "tf2onnx"] -tf-cpu = ["keras-nlp (>=0.3.1)", "onnxconverter-common", "tensorflow-cpu (>=2.4,<2.13)", "tensorflow-text (<2.13)", "tf2onnx"] +testing = ["GitPython (<3.1.19)", "beautifulsoup4", "black (>=23.1,<24.0)", "cookiecutter (==1.7.3)", "datasets (!=2.5.0)", "dill (<0.3.5)", "evaluate (>=0.2.0)", "faiss-cpu", "hf-doc-builder (>=0.3.0)", "nltk", "parameterized", "protobuf", "psutil", "pytest (>=7.2.0)", "pytest-timeout", "pytest-xdist", "rjieba", "rouge-score (!=0.0.7,!=0.0.8,!=0.1,!=0.1.1)", "sacrebleu (>=1.4.12,<2.0.0)", "sacremoses", "timeout-decorator"] +tf = ["keras-nlp (>=0.3.1)", "onnxconverter-common", "tensorflow (>=2.6,<2.14)", "tensorflow-text (<2.14)", "tf2onnx"] +tf-cpu = ["keras-nlp (>=0.3.1)", "onnxconverter-common", "tensorflow-cpu (>=2.6,<2.14)", "tensorflow-text (<2.14)", "tf2onnx"] tf-speech = ["kenlm", "librosa", "phonemizer", "pyctcdecode (>=0.4.0)"] timm = ["timm"] tokenizers = ["tokenizers (>=0.11.1,!=0.11.3,<0.14)"] -torch = ["accelerate (>=0.20.2)", "torch (>=1.9,!=1.12.0)"] +torch = ["accelerate (>=0.20.3)", "torch (>=1.9,!=1.12.0)"] torch-speech = ["kenlm", "librosa", "phonemizer", "pyctcdecode (>=0.4.0)", "torchaudio"] -torch-vision = ["Pillow", "torchvision"] -torchhub = ["filelock", "huggingface-hub (>=0.14.1,<1.0)", "importlib-metadata", "numpy (>=1.17)", "packaging (>=20.0)", "protobuf (<=3.20.3)", "regex 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"sha256:b420d5aa048ee7c456233a49203f7d58d1736af4a6cde637657d78c13ab7969b"}, + {file = "trove-classifiers-2023.8.7.tar.gz", hash = "sha256:c9f2a0a85d545e5362e967e4f069f56fddfd91215e22ffa48c66fb283521319a"}, + {file = "trove_classifiers-2023.8.7-py3-none-any.whl", hash = "sha256:a676626a31286130d56de2ea1232484df97c567eb429d56cfcb0637e681ecf09"}, ] [[package]] @@ -3652,13 +3562,13 @@ urllib3 = ">=1.26.0" [[package]] name = "typing-extensions" -version = "4.5.0" +version = "4.7.1" description = "Backported and Experimental Type Hints for Python 3.7+" optional = false python-versions = ">=3.7" files = [ - {file = "typing_extensions-4.5.0-py3-none-any.whl", hash = "sha256:fb33085c39dd998ac16d1431ebc293a8b3eedd00fd4a32de0ff79002c19511b4"}, - {file = "typing_extensions-4.5.0.tar.gz", hash = "sha256:5cb5f4a79139d699607b3ef622a1dedafa84e115ab0024e0d9c044a9479ca7cb"}, + {file = "typing_extensions-4.7.1-py3-none-any.whl", hash = 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builder" optional = false python-versions = ">=3.7" files = [ - {file = "virtualenv-20.24.2-py3-none-any.whl", hash = "sha256:43a3052be36080548bdee0b42919c88072037d50d56c28bd3f853cbe92b953ff"}, - {file = "virtualenv-20.24.2.tar.gz", hash = "sha256:fd8a78f46f6b99a67b7ec5cf73f92357891a7b3a40fd97637c27f854aae3b9e0"}, + {file = "virtualenv-20.24.3-py3-none-any.whl", hash = "sha256:95a6e9398b4967fbcb5fef2acec5efaf9aa4972049d9ae41f95e0972a683fd02"}, + {file = "virtualenv-20.24.3.tar.gz", hash = "sha256:e5c3b4ce817b0b328af041506a2a299418c98747c4b1e68cb7527e74ced23efc"}, ] [package.dependencies] @@ -3730,6 +3651,26 @@ platformdirs = ">=3.9.1,<4" docs = ["furo (>=2023.5.20)", "proselint (>=0.13)", "sphinx (>=7.0.1)", "sphinx-argparse (>=0.4)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=23.6)"] test = ["covdefaults (>=2.3)", "coverage (>=7.2.7)", "coverage-enable-subprocess (>=1)", "flaky (>=3.7)", "packaging (>=23.1)", "pytest (>=7.4)", "pytest-env (>=0.8.2)", "pytest-freezer (>=0.4.8)", "pytest-mock (>=3.11.1)", "pytest-randomly (>=3.12)", "pytest-timeout (>=2.1)", "setuptools (>=68)", "time-machine (>=2.10)"] +[[package]] +name = "weaviate-client" +version = "3.23.0" +description = "A python native Weaviate client" +optional = false +python-versions = ">=3.8" +files = [ + {file = "weaviate-client-3.23.0.tar.gz", hash = "sha256:3ffd7f1460c9e32755d84d4f5fc63dfc0bd990dbe2c3dc20d5c68119d467680e"}, + {file = "weaviate_client-3.23.0-py3-none-any.whl", hash = "sha256:3d3bb75c1d96b2b71e213c5eb885ae3e3f42e4304955383c467d100187d9ff8e"}, +] + +[package.dependencies] +authlib = ">=1.1.0" +requests = ">=2.28.0,<=2.31.0" +tqdm = ">=4.59.0,<5.0.0" +validators = ">=0.18.2,<=0.21.0" + +[package.extras] +grpc = ["grpcio", "grpcio-tools"] + [[package]] name = "webencodings" version = "0.5.1" @@ -3821,13 +3762,13 @@ files = [ [[package]] name = "wheel" -version = "0.41.0" +version = "0.41.2" description = "A built-package format for Python" optional = false python-versions = ">=3.7" files = [ - {file = "wheel-0.41.0-py3-none-any.whl", hash = "sha256:7e9be3bbd0078f6147d82ed9ed957e323e7708f57e134743d2edef3a7b7972a9"}, - {file = "wheel-0.41.0.tar.gz", hash = "sha256:55a0f0a5a84869bce5ba775abfd9c462e3a6b1b7b7ec69d72c0b83d673a5114d"}, + {file = "wheel-0.41.2-py3-none-any.whl", hash = "sha256:75909db2664838d015e3d9139004ee16711748a52c8f336b52882266540215d8"}, + {file = "wheel-0.41.2.tar.gz", hash = "sha256:0c5ac5ff2afb79ac23ab82bab027a0be7b5dbcf2e54dc50efe4bf507de1f7985"}, ] [package.extras] @@ -4022,4 +3963,4 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p [metadata] lock-version = "2.0" python-versions = ">=3.10,<3.12" -content-hash = "b06ccd9a1c06f6782e18f78aa51c3d33af75d74526a9f3a85bf26c6e58ab3e62" +content-hash = "9ea27b472da2822df45db95a297595ff5bb054680cb8f2cfea65776edb7d85d3" diff --git a/server/pyproject.toml b/server/pyproject.toml index 331290a..3fab9df 100644 --- a/server/pyproject.toml +++ b/server/pyproject.toml @@ -21,6 +21,11 @@ pymupdf = "^1.22.5" openai = "^0.27.8" supabase = "^1.0.3" poetry-dotenv-plugin = "^0.2.0" +torch = [ + { platform = "darwin", version="^2.0.1" }, + { platform = "linux", url = "http://download.pytorch.org/whl/cpu/torch-2.0.1%2Bcpu-cp310-cp310-linux_x86_64.whl", markers = "platform_machine == 'x86_64'" } +] +weaviate-client = "^3.23.0" [tool.poetry.scripts] start = "server.main:start" diff --git a/server/server/main.py b/server/server/main.py index afc9bdc..298ed58 100644 --- a/server/server/main.py +++ b/server/server/main.py @@ -1,4 +1,7 @@ import os +from embedding_generation.local import SentenceTransformerEmbedding +from embedding_generation.models import ALL_MINILM_L6_V2, EmbeddingModel +from embedding_generation.services import HuggingfaceInferenceEndpoingEmbedding import uvicorn from fastapi import FastAPI, File, HTTPException, Depends, Body, UploadFile from typing import List @@ -35,7 +38,17 @@ ) bearer_scheme = HTTPBearer() -vector_store = WeaviateVectorStore() if os.environ.get('USE_WEAVIATE_VECTORSTORE') == 'true' else QdrantVectorStore() +embedding_model_override = EmbeddingModel(os.environ.get("embeddings_model"), os.environ.get("embeddings_size")) + +embedding_model = embedding_model_override if embedding_model_override.name else ALL_MINILM_L6_V2 + +if os.environ.get("embeddings_local"): + embedding_generator = SentenceTransformerEmbedding(embedding_model) +else: + embedding_generator = HuggingfaceInferenceEndpoingEmbedding(embedding_model, os.environ.get("hf_token")) + +# TODO: Waviate module needs to be refactored to use embedding abstraction as well +vector_store = WeaviateVectorStore() if os.environ.get('USE_WEAVIATE_VECTORSTORE') == 'true' else QdrantVectorStore(embedding_generator) llm = get_selected_llm() db = Database() @@ -89,16 +102,19 @@ async def get_previews( previews: List[FilePreview] = [] for upload_file in upload_files: - pdf_document = fitz.open(upload_file.filename, upload_file.file) - page = pdf_document.load_page(0) - image = page.get_pixmap() - image_bytes = image.tobytes() - image_base64 = base64.b64encode(image_bytes).decode("utf-8") - previews.append( - FilePreview( - file_name=upload_file.filename, file_preview_img=image_base64 + try: + pdf_document = fitz.open(upload_file.filename, upload_file.file) + page = pdf_document.load_page(0) + image = page.get_pixmap() + image_bytes = image.tobytes() + image_base64 = base64.b64encode(image_bytes).decode("utf-8") + previews.append( + FilePreview( + file_name=upload_file.filename, file_preview_img=image_base64 + ) ) - ) + except Exception as e: + print(f'Issue creating preview for file {upload_file.filename}\nError: {e}') return GetPreviewsResponse(previews=previews) except Exception as e: print(e) diff --git a/server/vectorstore/qdrant_vectorstore.py b/server/vectorstore/qdrant_vectorstore.py index 35208ef..b31146f 100644 --- a/server/vectorstore/qdrant_vectorstore.py +++ b/server/vectorstore/qdrant_vectorstore.py @@ -1,22 +1,16 @@ import os +from embedding_generation.models import EmbeddingGenerator from models.models import Document as PsychicDocument, VectorStore, AppConfig from typing import List, Any, Optional import uuid from qdrant_client import QdrantClient from langchain.docstore.document import Document -from sentence_transformers import SentenceTransformer from langchain.text_splitter import RecursiveCharacterTextSplitter import os from qdrant_client.models import PointStruct, Distance, VectorParams, ScoredPoint from qdrant_client.http import models as rest -embeddings_model = SentenceTransformer( - os.environ.get("embeddings_model") or "all-MiniLM-L6-v2" -) -embeddings_dimension = 384 - - class QdrantVectorStore(VectorStore): client: Optional[QdrantClient] = None collection_name: Optional[str] = None @@ -24,7 +18,7 @@ class QdrantVectorStore(VectorStore): class Config: arbitrary_types_allowed = True - def __init__(self): + def __init__(self, embeddings_model: EmbeddingGenerator): # self.client = Qdrant.from_documents( # [], # embeddings, @@ -33,6 +27,7 @@ def __init__(self): # ) super().__init__() + self.embeddings_model = embeddings_model if not os.getenv("QDRANT_URL"): raise Exception("QDRANT_URL must be set as an environment variable.") qdrant_port = os.getenv("QDRANT_PORT") or "6333" @@ -46,7 +41,7 @@ def __init__(self): self.client.create_collection( collection_name="my_documents", vectors_config=VectorParams( - size=embeddings_dimension, distance=Distance.COSINE + size=self.embeddings_model.dimensions, distance=Distance.COSINE ), ) self.collection_name = "my_documents" @@ -83,7 +78,7 @@ async def upsert( ) # TODO: Fix this so that the vector output is of the format PointStruct expects - vector = embeddings_model.encode([doc.page_content])[0] + vector = self.embeddings_model.encode([doc.page_content])[0] vector = vector.tolist() points.append( @@ -107,7 +102,7 @@ async def upsert( return True async def query(self, query: str, app_config: AppConfig) -> List[PsychicDocument]: - query_vector = embeddings_model.encode([query])[0] + query_vector = self.embeddings_model.encode([query])[0] query_vector = query_vector.tolist() results = self.client.search( collection_name=self.collection_name,