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Fix for trainer estimator metadata propagation (#909)
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10 files changed

+209
-95
lines changed

10 files changed

+209
-95
lines changed

‎src/Microsoft.ML.Core/Data/MetadataUtils.cs‎

Lines changed: 15 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -466,5 +466,20 @@ public static bool TryGetCategoricalFeatureIndices(ISchema schema, int colIndex,
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467467
return isValid;
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}
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/// <summary>
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/// Produces sequence of columns that are generated by trainer estimators.
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/// </summary>
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/// <param name="isNormalized">whether we should also append 'IsNormalized' (typically for probability column)</param>
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public static IEnumerable<SchemaShape.Column> GetTrainerOutputMetadata(bool isNormalized = false)
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{
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var cols = new List<SchemaShape.Column>();
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cols.Add(new SchemaShape.Column(Kinds.ScoreColumnSetId, SchemaShape.Column.VectorKind.Scalar, NumberType.U4, true));
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cols.Add(new SchemaShape.Column(Kinds.ScoreColumnKind, SchemaShape.Column.VectorKind.Scalar, TextType.Instance, false));
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cols.Add(new SchemaShape.Column(Kinds.ScoreValueKind, SchemaShape.Column.VectorKind.Scalar, TextType.Instance, false));
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if (isNormalized)
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cols.Add(new SchemaShape.Column(Kinds.IsNormalized, SchemaShape.Column.VectorKind.Scalar, BoolType.Instance, false));
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return cols;
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}
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}
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}

‎src/Microsoft.ML.Data/Training/TrainerEstimatorBase.cs‎

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Original file line numberDiff line numberDiff line change
@@ -2,6 +2,7 @@
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// The .NET Foundation licenses this file to you under the MIT license.
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// See the LICENSE file in the project root for more information.
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5+
using System.Collections.Generic;
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using System.Linq;
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using Microsoft.ML.Core.Data;
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using Microsoft.ML.Runtime.Data;

‎src/Microsoft.ML.StandardLearners/Standard/LinearClassificationTrainer.cs‎

Lines changed: 81 additions & 83 deletions
Large diffs are not rendered by default.

‎src/Microsoft.ML.StandardLearners/Standard/Online/AveragedPerceptron.cs‎

Lines changed: 18 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -14,6 +14,7 @@
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using Microsoft.ML.Runtime.Learners;
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using Microsoft.ML.Runtime.Numeric;
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using Microsoft.ML.Runtime.Training;
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using System;
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[assembly: LoadableClass(AveragedPerceptronTrainer.Summary, typeof(AveragedPerceptronTrainer), typeof(AveragedPerceptronTrainer.Arguments),
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new[] { typeof(SignatureBinaryClassifierTrainer), typeof(SignatureTrainer), typeof(SignatureFeatureScorerTrainer) },
@@ -59,9 +60,9 @@ public AveragedPerceptronTrainer(IHostEnvironment env, Arguments args)
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_outputColumns = new[]
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{
62-
new SchemaShape.Column(DefaultColumnNames.Score, SchemaShape.Column.VectorKind.Scalar, NumberType.R4, false),
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new SchemaShape.Column(DefaultColumnNames.Probability, SchemaShape.Column.VectorKind.Scalar, NumberType.R4, false),
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new SchemaShape.Column(DefaultColumnNames.PredictedLabel, SchemaShape.Column.VectorKind.Scalar, BoolType.Instance, false)
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new SchemaShape.Column(DefaultColumnNames.Score, SchemaShape.Column.VectorKind.Scalar, NumberType.R4, false, new SchemaShape(MetadataUtils.GetTrainerOutputMetadata())),
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new SchemaShape.Column(DefaultColumnNames.Probability, SchemaShape.Column.VectorKind.Scalar, NumberType.R4, false, new SchemaShape(MetadataUtils.GetTrainerOutputMetadata(true))),
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new SchemaShape.Column(DefaultColumnNames.PredictedLabel, SchemaShape.Column.VectorKind.Scalar, BoolType.Instance, false, new SchemaShape(MetadataUtils.GetTrainerOutputMetadata()))
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};
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}
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@@ -79,6 +80,20 @@ protected override void CheckLabel(RoleMappedData data)
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data.CheckBinaryLabel();
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}
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protected override void CheckLabelCompatible(SchemaShape.Column labelCol)
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{
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Contracts.AssertValue(labelCol);
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Action error =
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() => throw Host.ExceptSchemaMismatch(nameof(labelCol), RoleMappedSchema.ColumnRole.Label.Value, labelCol.Name, "BL, R8, R4 or a Key", labelCol.GetTypeString());
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if (labelCol.Kind != SchemaShape.Column.VectorKind.Scalar)
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error();
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if (!labelCol.IsKey && labelCol.ItemType != NumberType.R4 && labelCol.ItemType != NumberType.R8 && !labelCol.ItemType.IsBool)
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error();
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}
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8297
private static SchemaShape.Column MakeLabelColumn(string labelColumn)
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{
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return new SchemaShape.Column(labelColumn, SchemaShape.Column.VectorKind.Scalar, BoolType.Instance, false);

‎src/Microsoft.ML.StandardLearners/Standard/Online/OnlineGradientDescent.cs‎

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -58,7 +58,7 @@ public OnlineGradientDescentTrainer(IHostEnvironment env, Arguments args)
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_outputColumns = new[]
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{
61-
new SchemaShape.Column(DefaultColumnNames.Score, SchemaShape.Column.VectorKind.Vector, NumberType.R4, false)
61+
new SchemaShape.Column(DefaultColumnNames.Score, SchemaShape.Column.VectorKind.Scalar, NumberType.R4, false, new SchemaShape(MetadataUtils.GetTrainerOutputMetadata()))
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};
6363
}
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‎src/Microsoft.ML.StandardLearners/Standard/SdcaMultiClass.cs‎

Lines changed: 4 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -61,11 +61,12 @@ protected override SchemaShape.Column[] GetOutputColumnsCore(SchemaShape inputSc
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bool success = inputSchema.TryFindColumn(LabelColumn.Name, out var labelCol);
6262
Contracts.Assert(success);
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64-
var metadata = new SchemaShape(labelCol.Metadata.Columns.Where(x => x.Name == MetadataUtils.Kinds.KeyValues));
64+
var metadata = new SchemaShape(labelCol.Metadata.Columns.Where(x => x.Name == MetadataUtils.Kinds.KeyValues)
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.Concat(MetadataUtils.GetTrainerOutputMetadata()));
6566
return new[]
6667
{
67-
new SchemaShape.Column(DefaultColumnNames.Score, SchemaShape.Column.VectorKind.Vector, NumberType.R4, false),
68-
new SchemaShape.Column(DefaultColumnNames.PredictedLabel, SchemaShape.Column.VectorKind.Scalar, labelCol.ItemType, labelCol.IsKey, metadata)
68+
new SchemaShape.Column(DefaultColumnNames.Score, SchemaShape.Column.VectorKind.Vector, NumberType.R4, false, new SchemaShape(MetadataUtils.GetTrainerOutputMetadata())),
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new SchemaShape.Column(DefaultColumnNames.PredictedLabel, SchemaShape.Column.VectorKind.Scalar, NumberType.U4, true, metadata)
6970
};
7071
}
7172

‎src/Microsoft.ML.StandardLearners/Standard/SdcaRegression.cs‎

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -63,7 +63,7 @@ public SdcaRegressionTrainer(IHostEnvironment env, Arguments args, string featur
6363
_args = args;
6464
_outputColumns = new[]
6565
{
66-
new SchemaShape.Column(DefaultColumnNames.Score, SchemaShape.Column.VectorKind.Scalar, NumberType.R4, false)
66+
new SchemaShape.Column(DefaultColumnNames.Score, SchemaShape.Column.VectorKind.Scalar, NumberType.R4, false, new SchemaShape(MetadataUtils.GetTrainerOutputMetadata()))
6767
};
6868
}
6969

‎test/Microsoft.ML.TestFramework/DataPipe/TestDataPipeBase.cs‎

Lines changed: 5 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -153,15 +153,16 @@ protected void TestEstimatorCore(IEstimator<ITransformer> estimator,
153153
CheckSameSchemaShape(outSchemaShape, scoredTrainSchemaShape);
154154
}
155155

156-
private void CheckSameSchemaShape(SchemaShape first, SchemaShape second)
156+
private void CheckSameSchemaShape(SchemaShape promised, SchemaShape delivered)
157157
{
158-
Assert.True(first.Columns.Length == second.Columns.Length);
159-
var sortedCols1 = first.Columns.OrderBy(x => x.Name);
160-
var sortedCols2 = second.Columns.OrderBy(x => x.Name);
158+
Assert.True(promised.Columns.Length == delivered.Columns.Length);
159+
var sortedCols1 = promised.Columns.OrderBy(x => x.Name);
160+
var sortedCols2 = delivered.Columns.OrderBy(x => x.Name);
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162162
foreach (var (x, y) in sortedCols1.Zip(sortedCols2, (x, y) => (x, y)))
163163
{
164164
Assert.Equal(x.Name, y.Name);
165+
// We want the 'promised' metadata to be a superset of 'delivered'.
165166
Assert.True(y.IsCompatibleWith(x), $"Mismatch on {x.Name}");
166167
}
167168
}

‎test/Microsoft.ML.Tests/TrainerEstimators/OnlineLinearTests.cs‎

Lines changed: 43 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,43 @@
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// Licensed to the .NET Foundation under one or more agreements.
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// The .NET Foundation licenses this file to you under the MIT license.
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// See the LICENSE file in the project root for more information.
4+
5+
using Microsoft.ML.Core.Data;
6+
using Microsoft.ML.Runtime.Data;
7+
using Microsoft.ML.Runtime.Learners;
8+
using Microsoft.ML.Runtime.RunTests;
9+
using Xunit;
10+
using Xunit.Abstractions;
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12+
namespace Microsoft.ML.Tests.Transformers
13+
{
14+
public sealed class OnlineLinearTests : TestDataPipeBase
15+
{
16+
public OnlineLinearTests(ITestOutputHelper helper) : base(helper)
17+
{
18+
}
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[Fact(Skip = "AP is now uncalibrated but advertises as calibrated")]
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public void OnlineLinearWorkout()
22+
{
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var dataPath = GetDataPath("breast-cancer.txt");
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var data = TextLoader.CreateReader(Env, ctx => (Label: ctx.LoadFloat(0), Features: ctx.LoadFloat(1, 10)))
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.Read(new MultiFileSource(dataPath));
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28+
var pipe = data.MakeNewEstimator()
29+
.Append(r => (r.Label, Features: r.Features.Normalize()));
30+
31+
var trainData = pipe.Fit(data).Transform(data).AsDynamic;
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33+
IEstimator<ITransformer> est = new OnlineGradientDescentTrainer(Env, new OnlineGradientDescentTrainer.Arguments());
34+
TestEstimatorCore(est, trainData);
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36+
est = new AveragedPerceptronTrainer(Env, new AveragedPerceptronTrainer.Arguments());
37+
TestEstimatorCore(est, trainData);
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Done();
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41+
}
42+
}
43+
}

‎test/Microsoft.ML.Tests/TrainerEstimators/SdcaTests.cs‎

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Original file line numberDiff line numberDiff line change
@@ -0,0 +1,40 @@
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// Licensed to the .NET Foundation under one or more agreements.
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// The .NET Foundation licenses this file to you under the MIT license.
3+
// See the LICENSE file in the project root for more information.
4+
5+
using Microsoft.ML.Core.Data;
6+
using Microsoft.ML.Runtime.Data;
7+
using Microsoft.ML.Runtime.Learners;
8+
using Microsoft.ML.Runtime.RunTests;
9+
using Xunit;
10+
using Xunit.Abstractions;
11+
12+
namespace Microsoft.ML.Tests.Transformers
13+
{
14+
public sealed class SdcaTests : TestDataPipeBase
15+
{
16+
public SdcaTests(ITestOutputHelper helper) : base(helper)
17+
{
18+
}
19+
20+
[Fact]
21+
public void SdcaWorkout()
22+
{
23+
var dataPath = GetDataPath("breast-cancer.txt");
24+
25+
var data = TextLoader.CreateReader(Env, ctx => (Label: ctx.LoadFloat(0), Features: ctx.LoadFloat(1, 10)))
26+
.Read(new MultiFileSource(dataPath));
27+
28+
IEstimator<ITransformer> est = new LinearClassificationTrainer(Env, new LinearClassificationTrainer.Arguments { ConvergenceTolerance = 1e-2f }, "Features", "Label");
29+
TestEstimatorCore(est, data.AsDynamic);
30+
31+
est = new SdcaRegressionTrainer(Env, new SdcaRegressionTrainer.Arguments { ConvergenceTolerance = 1e-2f }, "Features", "Label");
32+
TestEstimatorCore(est, data.AsDynamic);
33+
34+
est = new SdcaMultiClassTrainer(Env, new SdcaMultiClassTrainer.Arguments { ConvergenceTolerance = 1e-2f }, "Features", "Label");
35+
TestEstimatorCore(est, data.AsDynamic);
36+
37+
Done();
38+
}
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}
40+
}

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