From 7d16a56dc5eb8623e5da741c7438a02b928ba2df Mon Sep 17 00:00:00 2001 From: Ryan Tibshirani Date: Wed, 5 Jan 2022 08:40:21 -0500 Subject: [PATCH 01/15] Revision for About COVIDcast --- content/covid19/_index.md | 74 +++++++++++++++++++-- content/covid19/images/severity-pyramid.svg | 1 + 2 files changed, 70 insertions(+), 5 deletions(-) create mode 100644 content/covid19/images/severity-pyramid.svg diff --git a/content/covid19/_index.md b/content/covid19/_index.md index a7c82b33a..05f2d1f32 100644 --- a/content/covid19/_index.md +++ b/content/covid19/_index.md @@ -4,11 +4,75 @@ linkTitle: COVID-19 layout: single --- -In March 2020, Delphi pivoted from seasonal epidemic forecasting to COVID-19 tracking. Since then, we’ve created and maintained the nation’s largest public repository of diverse, geographically-detailed, real-time indicators of COVID-19 activity in the U.S. Our indicators cover every rung of the severity pyramid, and are freely available through [our public API]({{< apiref "api/covidcast.html" >}}) or our [data export tool]({{< relref "covidcast/export" >}}). +COVIDcast is the umbrella name for Delphi's project in support of the COVID-19 +response in the United States. It has several parts. -Several of the underlying data sources (on which these indicators are built) would not exist or be publicly available without our efforts. This includes: +1. We procure unique data streams that reflect COVID activity from a wide + variety of sources, and extract COVID-related signals. These signals cover + every nearly every rung of the [severity pyramid](#severity-pyramid), and + constitute what we believe may be the nation's largest public repository of + real-time, geographically-detailed indicators of COVID activity in the U.S. -* A [massive national daily survey]({{< relref "covid19/ctis" >}}) we’re running in partnership with Facebook. Over 20 million Americans have answered the survey since April 2020, providing real-time insights into, e.g., self-reported symptoms, mask wearing, testing, and contacts, all broken down by various demographics. -* An enormous database of medical insurance claims that have been de-identified in accordance with HIPAA privacy regulations, covering more than half the US population, made possible through health system partners including Change Healthcare. We use this to produce a new syndromic COVID-19 indicator based on doctor visits, and other indicators based on hospitalizations and ICU admissions. +2. We make all COVID-19 indicators freely available through a + [public API](https://cmu-delphi.github.io/delphi-epidata/api/covidcast.html), + which is updated with new data daily. We also provide associated + [R](https://cmu-delphi.github.io/covidcast/covidcastR/) and + [Python](https://cmu-delphi.github.io/covidcast/covidcast-py/html/) packages, + and a [dashboard]({{< relref "covidcast" >}}) to visualize a core set of + indicators. -An overview of our work and data was [published in the *Proceedings of the National Academy of Sciences*](https://doi.org/10.1073/pnas.2111452118). We have selected a small number of indicators to showcase in [COVIDcast]({{< relref "covidcast" >}}), a visualization system that helps place pandemic activity in geographic and temporal context. It includes a notion of correlation across time, for example, a spike in cases is often followed by a spike in hospital admissions some number of days later. +3. Some of the underlying data sources (on which these indicators are built) + would not exist or be publicly available without our efforts. These include a + [massive national daily survey]({{< relref "covid19/ctis" >}}) we're running + in partnership with Facebook, which has been taken by over 25 million + Americans since April 2020; and an enormous database of de-identified medical + insurance claims, covering more than 35% of the U.S. population, made possible + through health system partners including Change Healthcare. + +4. We support and advise the U.S. CDC (in collaboration with the + [Reich Lab](https://reichlab.io/)) on short-term COVID forecasting, which + includes creating and evaluating an ensemble forecast out of the models + submitted to the Forecast Hub which serves as the basis for the + [CDC's official forecast + reports](https://www.cdc.gov/coronavirus/2019-ncov/covid-data/forecasting-us.html). + +# See Also + +- [COVIDcast dashboard]({{< relref "covidcast" >}}) +- [CTIS dashboard]({{< relref "covidcast/survey-results" >}}) +- [Export data tool]({{< relref "covidcast/export" >}}) +- [API documentation](https://cmu-delphi.github.io/delphi-epidata/api/covidcast.html) +- [R package](https://cmu-delphi.github.io/covidcast/covidcastR/) +- [Python package](https://cmu-delphi.github.io/covidcast/covidcast-py/html/) + +# Articles + +A summary of some key parts of COVIDcast can be found in the December 2021 PNAS +Special Feature: [Beyond Cases and Deaths: The Benefits of Auxiliary Data +Streams in Tracking the COVID-19 Pandemic](https://www.pnas.org/cc/beyond-cases-and-deaths). + +- [Epidemic tracking and forecasting: Lessons learned from a tumultuous + year](https://www.pnas.org/content/118/51/e2111456118?cct=2522) + by Rosenfeld and Tibshirani + +- [An open repository of real-time COVID-19 + indicators](https://www.pnas.org/content/118/51/e2111452118?cct=2522) + by Reinhart et al. + +- [Can auxiliary indicators improve COVID-19 + forecasting?](https://www.pnas.org/cc/beyond-cases-and-deaths) by McDonald et + al. + +- [Continuous real-time measurement of COVID-19 symptoms, risks, protective + behaviors, testing, and vaccination](https://www.pnas.org/content/118/51/e2111454118?cct=2522) + by Salomon et al. + +More recent work on nowcasting using COVID-19 indicators: + +- [Real-Time Estimation of COVID-19 Infections via Deconvolution and Sensor + Fusion](https://arxiv.org/abs/2112.06697) + by Jahja et al. + +# Severity Pyramid + +![](images/severity-pyramid) diff --git a/content/covid19/images/severity-pyramid.svg b/content/covid19/images/severity-pyramid.svg new file mode 100644 index 000000000..cb929a3ee --- /dev/null +++ b/content/covid19/images/severity-pyramid.svg @@ -0,0 +1 @@ + \ No newline at end of file From 882d80723531fe73e48e212915cb9b00ac50dfad Mon Sep 17 00:00:00 2001 From: Ryan Tibshirani Date: Wed, 5 Jan 2022 08:45:24 -0500 Subject: [PATCH 02/15] Add git repos link --- content/covid19/_index.md | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/content/covid19/_index.md b/content/covid19/_index.md index 05f2d1f32..ce6893546 100644 --- a/content/covid19/_index.md +++ b/content/covid19/_index.md @@ -44,7 +44,9 @@ response in the United States. It has several parts. - [API documentation](https://cmu-delphi.github.io/delphi-epidata/api/covidcast.html) - [R package](https://cmu-delphi.github.io/covidcast/covidcastR/) - [Python package](https://cmu-delphi.github.io/covidcast/covidcast-py/html/) - +- [GitHub repo](https://www.github.com/cmu-delphi/covidcast/) (see also + [related repos](https://github.com/cmu-delphi/covidcast/#related-repos)) + # Articles A summary of some key parts of COVIDcast can be found in the December 2021 PNAS From 5c431265aec833aeee0b401a059683dc06c1fd6c Mon Sep 17 00:00:00 2001 From: Ryan Tibshirani Date: Wed, 5 Jan 2022 08:53:21 -0500 Subject: [PATCH 03/15] Various small fixes --- content/covid19/_index.md | 22 +++++++++------------- 1 file changed, 9 insertions(+), 13 deletions(-) diff --git a/content/covid19/_index.md b/content/covid19/_index.md index ce6893546..1b6db4e23 100644 --- a/content/covid19/_index.md +++ b/content/covid19/_index.md @@ -4,8 +4,8 @@ linkTitle: COVID-19 layout: single --- -COVIDcast is the umbrella name for Delphi's project in support of the COVID-19 -response in the United States. It has several parts. +COVIDcast is the name for Delphi's project in support of the COVID-19 response +in the United States. It has several parts. 1. We procure unique data streams that reflect COVID activity from a wide variety of sources, and extract COVID-related signals. These signals cover @@ -32,9 +32,8 @@ response in the United States. It has several parts. 4. We support and advise the U.S. CDC (in collaboration with the [Reich Lab](https://reichlab.io/)) on short-term COVID forecasting, which includes creating and evaluating an ensemble forecast out of the models - submitted to the Forecast Hub which serves as the basis for the - [CDC's official forecast - reports](https://www.cdc.gov/coronavirus/2019-ncov/covid-data/forecasting-us.html). + submitted to the Forecast Hub, serving as the basis for the [CDC's official + forecast communications](https://www.cdc.gov/coronavirus/2019-ncov/covid-data/forecasting-us.html). # See Also @@ -56,25 +55,22 @@ Streams in Tracking the COVID-19 Pandemic](https://www.pnas.org/cc/beyond-cases- - [Epidemic tracking and forecasting: Lessons learned from a tumultuous year](https://www.pnas.org/content/118/51/e2111456118?cct=2522) by Rosenfeld and Tibshirani - - [An open repository of real-time COVID-19 indicators](https://www.pnas.org/content/118/51/e2111452118?cct=2522) by Reinhart et al. - - [Can auxiliary indicators improve COVID-19 - forecasting?](https://www.pnas.org/cc/beyond-cases-and-deaths) by McDonald et - al. - + forecasting?](https://www.pnas.org/content/118/51/e2111453118?cct=2522) + by McDonald et al. - [Continuous real-time measurement of COVID-19 symptoms, risks, protective behaviors, testing, and vaccination](https://www.pnas.org/content/118/51/e2111454118?cct=2522) by Salomon et al. More recent work on nowcasting using COVID-19 indicators: -- [Real-Time Estimation of COVID-19 Infections via Deconvolution and Sensor - Fusion](https://arxiv.org/abs/2112.06697) +- [Real-time estimation of COVID-19 infections via deconvolution and sensor + fusion](https://arxiv.org/abs/2112.06697) by Jahja et al. # Severity Pyramid -![](images/severity-pyramid) +![](images/severity-pyramid.svg) From bf0a8da5c749776eb3362bd93a285f525c3a2daf Mon Sep 17 00:00:00 2001 From: Ryan Tibshirani Date: Wed, 5 Jan 2022 09:03:33 -0500 Subject: [PATCH 04/15] More small fixes --- content/covid19/_index.md | 11 ++++++----- 1 file changed, 6 insertions(+), 5 deletions(-) diff --git a/content/covid19/_index.md b/content/covid19/_index.md index 1b6db4e23..8b380123d 100644 --- a/content/covid19/_index.md +++ b/content/covid19/_index.md @@ -21,9 +21,10 @@ in the United States. It has several parts. and a [dashboard]({{< relref "covidcast" >}}) to visualize a core set of indicators. -3. Some of the underlying data sources (on which these indicators are built) - would not exist or be publicly available without our efforts. These include a - [massive national daily survey]({{< relref "covid19/ctis" >}}) we're running +3. Some of the underlying data sources (on which these indicators are built) + would not exist or be publicly available without Delphi's efforts. These + include a [massive national daily survey]({{< relref "covid19/ctis" >}}) + called the COVID-19 Trends and Impact Survey (CTIS) that we're running in partnership with Facebook, which has been taken by over 25 million Americans since April 2020; and an enormous database of de-identified medical insurance claims, covering more than 35% of the U.S. population, made possible @@ -49,8 +50,8 @@ in the United States. It has several parts. # Articles A summary of some key parts of COVIDcast can be found in the December 2021 PNAS -Special Feature: [Beyond Cases and Deaths: The Benefits of Auxiliary Data -Streams in Tracking the COVID-19 Pandemic](https://www.pnas.org/cc/beyond-cases-and-deaths). +Special Feature: [Beyond cases and deaths: The benefits of auxiliary data +streams in tracking the COVID-19 pandemic](https://www.pnas.org/cc/beyond-cases-and-deaths). - [Epidemic tracking and forecasting: Lessons learned from a tumultuous year](https://www.pnas.org/content/118/51/e2111456118?cct=2522) From 43b894ef931acbaa0141f16d41843f0a801e544c Mon Sep 17 00:00:00 2001 From: Ryan Tibshirani Date: Wed, 5 Jan 2022 09:07:18 -0500 Subject: [PATCH 05/15] Change link placement --- content/covid19/_index.md | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/content/covid19/_index.md b/content/covid19/_index.md index 8b380123d..b389d7549 100644 --- a/content/covid19/_index.md +++ b/content/covid19/_index.md @@ -23,12 +23,12 @@ in the United States. It has several parts. 3. Some of the underlying data sources (on which these indicators are built) would not exist or be publicly available without Delphi's efforts. These - include a [massive national daily survey]({{< relref "covid19/ctis" >}}) - called the COVID-19 Trends and Impact Survey (CTIS) that we're running - in partnership with Facebook, which has been taken by over 25 million - Americans since April 2020; and an enormous database of de-identified medical - insurance claims, covering more than 35% of the U.S. population, made possible - through health system partners including Change Healthcare. + include a massive national daily survey called the [COVID-19 Trends and + Impact Survey (CTIS)]({{< relref "covidcast/ctis" >}}) that we're running in + partnership with Facebook, which has been taken by over 25 million Americans + since April 2020; and an enormous database of de-identified medical insurance + claims, covering more than 35% of the U.S. population, made possible through + health system partners including Change Healthcare. 4. We support and advise the U.S. CDC (in collaboration with the [Reich Lab](https://reichlab.io/)) on short-term COVID forecasting, which From c26eeca2222332e58e606a1ec3751b94d9b7cc61 Mon Sep 17 00:00:00 2001 From: Ryan Tibshirani Date: Wed, 5 Jan 2022 09:08:22 -0500 Subject: [PATCH 06/15] Use heading level 2 --- content/covid19/_index.md | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/content/covid19/_index.md b/content/covid19/_index.md index b389d7549..1fd31d72d 100644 --- a/content/covid19/_index.md +++ b/content/covid19/_index.md @@ -36,7 +36,7 @@ in the United States. It has several parts. submitted to the Forecast Hub, serving as the basis for the [CDC's official forecast communications](https://www.cdc.gov/coronavirus/2019-ncov/covid-data/forecasting-us.html). -# See Also +## See Also - [COVIDcast dashboard]({{< relref "covidcast" >}}) - [CTIS dashboard]({{< relref "covidcast/survey-results" >}}) @@ -47,7 +47,7 @@ in the United States. It has several parts. - [GitHub repo](https://www.github.com/cmu-delphi/covidcast/) (see also [related repos](https://github.com/cmu-delphi/covidcast/#related-repos)) -# Articles +## Articles A summary of some key parts of COVIDcast can be found in the December 2021 PNAS Special Feature: [Beyond cases and deaths: The benefits of auxiliary data @@ -72,6 +72,6 @@ More recent work on nowcasting using COVID-19 indicators: fusion](https://arxiv.org/abs/2112.06697) by Jahja et al. -# Severity Pyramid +## Severity Pyramid ![](images/severity-pyramid.svg) From dce2ff6e8781a93403750f8ed60a188af823a1bb Mon Sep 17 00:00:00 2001 From: Ryan Tibshirani Date: Wed, 5 Jan 2022 09:10:24 -0500 Subject: [PATCH 07/15] Fix errant link --- content/covid19/_index.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/content/covid19/_index.md b/content/covid19/_index.md index 1fd31d72d..cd8119cb6 100644 --- a/content/covid19/_index.md +++ b/content/covid19/_index.md @@ -24,7 +24,7 @@ in the United States. It has several parts. 3. Some of the underlying data sources (on which these indicators are built) would not exist or be publicly available without Delphi's efforts. These include a massive national daily survey called the [COVID-19 Trends and - Impact Survey (CTIS)]({{< relref "covidcast/ctis" >}}) that we're running in + Impact Survey (CTIS)]({{< relref "covid19/ctis" >}}) that we're running in partnership with Facebook, which has been taken by over 25 million Americans since April 2020; and an enormous database of de-identified medical insurance claims, covering more than 35% of the U.S. population, made possible through From 203ce144eb1343b8058057ffe2c785a52bc559bf Mon Sep 17 00:00:00 2001 From: Ryan Tibshirani Date: Wed, 5 Jan 2022 09:26:45 -0500 Subject: [PATCH 08/15] Articles --> Research Articles --- content/covid19/_index.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/content/covid19/_index.md b/content/covid19/_index.md index cd8119cb6..bb96d5844 100644 --- a/content/covid19/_index.md +++ b/content/covid19/_index.md @@ -47,7 +47,7 @@ in the United States. It has several parts. - [GitHub repo](https://www.github.com/cmu-delphi/covidcast/) (see also [related repos](https://github.com/cmu-delphi/covidcast/#related-repos)) -## Articles +## Research Articles A summary of some key parts of COVIDcast can be found in the December 2021 PNAS Special Feature: [Beyond cases and deaths: The benefits of auxiliary data From 64684d879332abe0b88bbb7dc39c150daf7d6369 Mon Sep 17 00:00:00 2001 From: Ryan Tibshirani Date: Wed, 5 Jan 2022 09:40:03 -0500 Subject: [PATCH 09/15] Add link to Forecast Hub --- content/covid19/_index.md | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/content/covid19/_index.md b/content/covid19/_index.md index bb96d5844..b49c5ea28 100644 --- a/content/covid19/_index.md +++ b/content/covid19/_index.md @@ -33,8 +33,9 @@ in the United States. It has several parts. 4. We support and advise the U.S. CDC (in collaboration with the [Reich Lab](https://reichlab.io/)) on short-term COVID forecasting, which includes creating and evaluating an ensemble forecast out of the models - submitted to the Forecast Hub, serving as the basis for the [CDC's official - forecast communications](https://www.cdc.gov/coronavirus/2019-ncov/covid-data/forecasting-us.html). + submitted to the [COVID-19 Forecast Hub](https://covid19forecasthub.org/), + serving as the basis for the [CDC's official forecast + communications](https://www.cdc.gov/coronavirus/2019-ncov/covid-data/forecasting-us.html). ## See Also From e2ed42067e5b1126466abd5ffe82a8c9aea0ff32 Mon Sep 17 00:00:00 2001 From: Ryan Tibshirani Date: Wed, 5 Jan 2022 09:47:50 -0500 Subject: [PATCH 10/15] Shorten main about page --- content/about/_index.md | 51 ++++++++++++++++++++++------------------- 1 file changed, 28 insertions(+), 23 deletions(-) diff --git a/content/about/_index.md b/content/about/_index.md index 2490e65f6..110718ec6 100644 --- a/content/about/_index.md +++ b/content/about/_index.md @@ -39,26 +39,31 @@ Public health authorities (federal, state, local), the healthcare industry, the In reverse chronological order. -- **April 2020.** We began supporting and advising the U.S. CDC in their community-driven COVID-19 forecasting effort. This work (collaborative with the [Reich Lab](https://reichlab.io) at UMass) includes: - - * Creating and evaluating an ensemble forecast from the 70+ forecasts in the [COVID-19 Forecast Hub](https://covid19forecasthub.org), which serves as the basis of the [CDC's official communications](https://www.cdc.gov/coronavirus/2019-ncov/covid-data/forecasting-us.html) on COVID-19 forecasting. - - * Creating a [forecast evaluation dashboard](https://delphi.cmu.edu/forecast-eval/), which provides an interactive analysis of the performance of Hub forecasters. - -- **March 2020.** We launched [COVIDcast]({{< relref "covidcast" >}}), the nation's largest public repository of diverse, real-time indicators of COVID-19 activity. - * Our indicators are freely available through a [public API]({{< apiref "api/covidcast.html" >}}), which is updated daily with the latest data. - - * Several of the underlying data sources (on which these indicators are built) would not exist or be publicly available without our efforts. This includes: - - * A massive [national daily survey]({{< relref "ctis">}}) we're running in [partnership with Facebook](https://covid-survey.dataforgood.fb.com/survey_and_map_data.html). Over 20 million Americans have answered the survey since April 2020, providing real-time insights into, e.g., self-reported symptoms, mask wearing, testing, contacts, and vaccination. - - * An enormous database of medical insurance claims that have been de-identified in accordance with HIPAA privacy regulations, covering more than half the U.S. population. This data is made available by health system partners including Change Healthcare, and provides insights into disease activity through outpatient visits and hospitalizations. - - -- **2019.** We became a CDC National Center of Excellence for Influenza Forecasting, one of two nationally (and a 5-year designation). - -- **2016.** We developed and deployed [influenza nowcasts](https://delphi.cmu.edu/nowcast/) for the CDC, state departments of public health, and the public. - -- **2016.** We developed and deployed the [Epidata API]({{< apiref "/" >}}), which provides real-time access to epidemiological surveillance data. - -- **2013.** We began supporting the U.S. CDC's Influenza Division in advancing and growing a [scientific community around influenza forecasting](https://www.cdc.gov/flu/weekly/flusight/index.html). We've been [perennial leaders in forecasting accuracy](https://www.cs.cmu.edu/~roni/CDC%20Flu%20Challenge%202014-2018%20Results.pdf) ever since. +- **April 2020.** We began supporting and advising the U.S. CDC in their + community-driven COVID-19 forecasting effort. This work (collaborative with + the [Reich Lab](https://reichlab.io) at UMass) includes creating and + evaluating an ensemble forecast from the models submitted to the + [COVID-19 Forecast Hub](https://covid19forecasthub.org), serving as the basis + for official CDC communications. + +- **March 2020.** We launched [COVIDcast]({{< relref "covidcast" >}}), the + nation's largest public repository of diverse, real-time indicators of + COVID-19 activity, freely accessible through a [public API]({{< apiref + "api/covidcast.html" >}}), which is updated daily with the latest data. + +- **2019.** We became a CDC National Center of Excellence for Influenza + Forecasting, one of two nationally (and a 5-year designation). + +- **2016.** We developed and deployed + [influenza nowcasts](https://delphi.cmu.edu/nowcast/) for the CDC, state + departments of public health, and the public. + +- **2016.** We developed and deployed the [Epidata API]({{< apiref "/" >}}), + which provides real-time access to epidemiological surveillance data. + +- **2013.** We began supporting the U.S. CDC's Influenza Division in advancing + and growing a [scientific community around influenza + forecasting](https://www.cdc.gov/flu/weekly/flusight/index.html). We've been + [perennial leaders in forecasting + accuracy](https://www.cs.cmu.edu/~roni/CDC%20Flu%20Challenge%202014-2018%20Results.pdf) + ever since. From f322dce491f0552aee8529dcd82c1a6383517709 Mon Sep 17 00:00:00 2001 From: Ryan Tibshirani Date: Wed, 5 Jan 2022 09:55:08 -0500 Subject: [PATCH 11/15] Add ref to eval dashboard --- content/about/_index.md | 11 +++++------ 1 file changed, 5 insertions(+), 6 deletions(-) diff --git a/content/about/_index.md b/content/about/_index.md index 110718ec6..8a2384303 100644 --- a/content/about/_index.md +++ b/content/about/_index.md @@ -39,12 +39,11 @@ Public health authorities (federal, state, local), the healthcare industry, the In reverse chronological order. -- **April 2020.** We began supporting and advising the U.S. CDC in their - community-driven COVID-19 forecasting effort. This work (collaborative with - the [Reich Lab](https://reichlab.io) at UMass) includes creating and - evaluating an ensemble forecast from the models submitted to the - [COVID-19 Forecast Hub](https://covid19forecasthub.org), serving as the basis - for official CDC communications. +- **April 2020.** We began supporting and advising the U.S. CDC's + community-driven COVID-19 forecasting effort. This includes creating and + maintaining an ensemble forecast from the models submitted to the + [COVID-19 Forecast Hub](https://covid19forecasthub.org), and a [forecast + evaluation dashboard](https://delphi.cmu.edu/forecast-eval/). - **March 2020.** We launched [COVIDcast]({{< relref "covidcast" >}}), the nation's largest public repository of diverse, real-time indicators of From 2bc5f79dff6e5ee49d496d851782a6b1da0b9e16 Mon Sep 17 00:00:00 2001 From: Ryan Tibshirani Date: Wed, 5 Jan 2022 09:58:41 -0500 Subject: [PATCH 12/15] a public API --> Epidata API --- content/about/_index.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/content/about/_index.md b/content/about/_index.md index 8a2384303..0c5d93290 100644 --- a/content/about/_index.md +++ b/content/about/_index.md @@ -40,14 +40,14 @@ Public health authorities (federal, state, local), the healthcare industry, the In reverse chronological order. - **April 2020.** We began supporting and advising the U.S. CDC's - community-driven COVID-19 forecasting effort. This includes creating and + community-driven COVID-19 forecasting effort, including creating and maintaining an ensemble forecast from the models submitted to the [COVID-19 Forecast Hub](https://covid19forecasthub.org), and a [forecast evaluation dashboard](https://delphi.cmu.edu/forecast-eval/). - **March 2020.** We launched [COVIDcast]({{< relref "covidcast" >}}), the nation's largest public repository of diverse, real-time indicators of - COVID-19 activity, freely accessible through a [public API]({{< apiref + COVID-19 activity, freely accessible through the [Epidata API]({{< apiref "api/covidcast.html" >}}), which is updated daily with the latest data. - **2019.** We became a CDC National Center of Excellence for Influenza From 0d6ec6c6933e30b73df80e088db941b8ff7a94fa Mon Sep 17 00:00:00 2001 From: Ryan Tibshirani Date: Thu, 6 Jan 2022 20:21:09 -0500 Subject: [PATCH 13/15] Remove duplicate CTIS entry --- content/about/publications/index.md | 6 ------ 1 file changed, 6 deletions(-) diff --git a/content/about/publications/index.md b/content/about/publications/index.md index 7931e1179..73b6dba82 100644 --- a/content/about/publications/index.md +++ b/content/about/publications/index.md @@ -43,12 +43,6 @@ papers: link: https://doi.org/10.1073/pnas.2111454118 journal: Proceedings of the National Academy of Sciences year: 2021 - - title: "Continuous Real-Time Measurement of COVID-19 Symptoms, Risks, Protective Behaviors, Testing and Vaccination" - image: survey.jpg - authors: Salomon, Reinhart, Bilinski, Chua, La Motte-Kerr, Rönn, Reitsma, Morris, LaRocca, Farag, Kreuter, Rosenfeld, Tibshirani - link: https://doi.org/10.1101/2021.07.24.21261076 - journal: medRxiv - year: 2021 - title: "Causal Inference in the Time of COVID-19" image: causal.jpg authors: Bonvini, Kennedy, Ventura, Wasserman From b72c0b887fe9c9c44c184093c2f4bbb30245d0bb Mon Sep 17 00:00:00 2001 From: ryantibs Date: Thu, 6 Jan 2022 20:21:59 -0500 Subject: [PATCH 14/15] Update content/covid19/_index.md Co-authored-by: Alex Reinhart --- content/covid19/_index.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/content/covid19/_index.md b/content/covid19/_index.md index b49c5ea28..d0ee0e2dd 100644 --- a/content/covid19/_index.md +++ b/content/covid19/_index.md @@ -50,7 +50,7 @@ in the United States. It has several parts. ## Research Articles -A summary of some key parts of COVIDcast can be found in the December 2021 PNAS +A summary of some key parts of COVIDcast can be found in the December 2021 *Proceedings of the National Academy of Sciences* Special Feature: [Beyond cases and deaths: The benefits of auxiliary data streams in tracking the COVID-19 pandemic](https://www.pnas.org/cc/beyond-cases-and-deaths). From d443486024f5cae89024d316dffd0144fb0c55d9 Mon Sep 17 00:00:00 2001 From: ryantibs Date: Thu, 6 Jan 2022 20:23:51 -0500 Subject: [PATCH 15/15] Update content/covid19/_index.md Co-authored-by: Alex Reinhart --- content/covid19/_index.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/content/covid19/_index.md b/content/covid19/_index.md index d0ee0e2dd..8ea732e30 100644 --- a/content/covid19/_index.md +++ b/content/covid19/_index.md @@ -52,7 +52,7 @@ in the United States. It has several parts. A summary of some key parts of COVIDcast can be found in the December 2021 *Proceedings of the National Academy of Sciences* Special Feature: [Beyond cases and deaths: The benefits of auxiliary data -streams in tracking the COVID-19 pandemic](https://www.pnas.org/cc/beyond-cases-and-deaths). +streams in tracking the COVID-19 pandemic](https://www.pnas.org/cc/beyond-cases-and-deaths): - [Epidemic tracking and forecasting: Lessons learned from a tumultuous year](https://www.pnas.org/content/118/51/e2111456118?cct=2522)