Merge pull request #533 from cmu-delphi/release/v3.0.0

krivard · web-flow · commit c3cd3ac3f683 · 2021-12-14T11:33:26.000-05:00
Release v3.0.0
diff --git a/.github/workflows/blog.yaml b/.github/workflows/blog.yaml
@@ -45,7 +45,7 @@ jobs:
         run: |
           Rscript ./dependencies.R
       - name: Restore Blogdown Cache
-        uses: actions/cache@v2.1.6
+        uses: actions/cache@v2
         with:
           path: |
             ./blogdown
@@ -65,10 +65,10 @@ jobs:
             ./content/blog
             ./static/blog
 
-      - uses: actions/setup-node@v2.4.1
+      - uses: actions/setup-node@v2
         with:
-          node-version: "12"
-      - uses: actions/cache@v2.1.6
+          node-version: 16
+      - uses: actions/cache@v2
         with:
           path: ~/.npm
           key: ${{ runner.os }}-node-${{ hashFiles('**/package-lock.json') }}
diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml
@@ -11,10 +11,10 @@ jobs:
           # submodules: true  # Fetch Hugo themes (true OR recursive)
           fetch-depth: 3 # Fetch all history for .GitInfo and .Lastmod
 
-      - uses: actions/setup-node@v2.4.1
+      - uses: actions/setup-node@v2
         with:
-          node-version: "14"
-      - uses: actions/cache@v2.1.6
+          node-version: 16
+      - uses: actions/cache@v2
         with:
           path: ~/.npm
           key: ${{ runner.os }}-node3-${{ hashFiles('**/package-lock.json') }}
diff --git a/.github/workflows/release_main.yml b/.github/workflows/release_main.yml
@@ -18,9 +18,9 @@ jobs:
     steps:
       - name: Check out code
         uses: actions/checkout@v2
-      - uses: actions/setup-node@v2.4.1
+      - uses: actions/setup-node@v2
         with:
-          node-version: "14"
+          node-version: 16
       - name: Extract version
         id: extract_version
         run: node -pe "'::set-output name=version::' + require('./package.json').version"
@@ -43,11 +43,11 @@ jobs:
     steps:
       - name: Check out code
         uses: actions/checkout@v2
-      - uses: actions/setup-node@v2.4.1
+      - uses: actions/setup-node@v2
         with:
-          node-version: "14"
+          node-version: 16
       - name: Cache Node.js modules
-        uses: actions/cache@v2.1.6
+        uses: actions/cache@v2
         with:
           path: ~/.npm # npm cache files are stored in `~/.npm` on Linux/macOS
           key: ${{ runner.OS }}-node2-${{ hashFiles('**/package-lock.json') }}
diff --git a/.gitignore b/.gitignore
@@ -15,3 +15,4 @@
 *.tgz
 .Rhistory
 *.log
+*.lock
diff --git a/content/about/news/headless/2021_11_22_nyt.md b/content/about/news/headless/2021_11_22_nyt.md
@@ -0,0 +1,7 @@
+---
+date: 2021-11-22
+title: Delphi PI Featured in New York Times
+category: update
+---
+
+The New York Times featured Delphi PI, Roni Rosenfeld, in the article [Inside the C.D.C.’s Pandemic ‘Weather Service’](https://www.nytimes.com/2021/11/22/magazine/cdc-pandemic-prediction.html).
diff --git a/content/covid19/_index.md b/content/covid19/_index.md
@@ -4,11 +4,11 @@ linkTitle: COVID-19
 layout: single
 ---
 
-In March 2020, Delphi pivoted from seasonal epidemic forecasting to COVID-19 tracking. Since then, we’ve created and maintained the nation’s largest public repository of diverse, geographically-detailed, real-time indicators of COVID-19 activity in the U.S. Our indicators cover every rung of the severity pyramid, and are freely available through our public API or our data export tool.
+In March 2020, Delphi pivoted from seasonal epidemic forecasting to COVID-19 tracking. Since then, we’ve created and maintained the nation’s largest public repository of diverse, geographically-detailed, real-time indicators of COVID-19 activity in the U.S. Our indicators cover every rung of the severity pyramid, and are freely available through [our public API]({{< apiref "api/covidcast.html" >}}) or our [data export tool]({{< relref "covidcast/export" >}}).
 
 Several of the underlying data sources (on which these indicators are built) would not exist or be publicly available without our efforts. This includes:
 
-* A massive national daily survey we’re running in partnership with Facebook. Over 20 million Americans have answered the survey since April 2020, providing real-time insights into, e.g., self-reported symptoms, mask wearing, testing, and contacts, all broken down by various demographics.
+* A [massive national daily survey]({{< relref "covid19/ctis" >}}) we’re running in partnership with Facebook. Over 20 million Americans have answered the survey since April 2020, providing real-time insights into, e.g., self-reported symptoms, mask wearing, testing, and contacts, all broken down by various demographics.
 * An enormous database of medical insurance claims that have been de-identified in accordance with HIPAA privacy regulations, covering more than half the US population, made possible through health system partners including Change Healthcare. We use this to produce a new syndromic COVID-19 indicator based on doctor visits, and other indicators based on hospitalizations and ICU admissions.
 
-We have selected a small number of indicators to showcase in COVIDcast, a visualization system that helps place pandemic activity in geographic and temporal context. It includes a notion of correlation across time, for example, a spike in cases is often followed by a spike in hospital admissions some number of days later.
+An overview of our work and data was [published in the *Proceedings of the National Academy of Sciences*](https://doi.org/10.1073/pnas.2111452118). We have selected a small number of indicators to showcase in [COVIDcast]({{< relref "covidcast" >}}), a visualization system that helps place pandemic activity in geographic and temporal context. It includes a notion of correlation across time, for example, a spike in cases is often followed by a spike in hospital admissions some number of days later.
diff --git a/content/covid19/ctis.md b/content/covid19/ctis.md
@@ -58,6 +58,13 @@ The [Symptom Data Challenge](https://www.symptomchallenge.org/) challenged parti
 
 ### Publications
 
+- J. Salomon, A. Reinhart, A. Bilinski, E. J. Chua, W. La Motte-Kerr, M. M.
+  Rönn, M. B. Reitsma, K. A. Morris, S. LaRocca, T. H. Farag, F. Kreuter, R.
+  Rosenfeld, and R. J. Tibshirani (2021). [The US COVID-19 Trends and Impact
+  Survey: Continuous real-time measurement of COVID-19 symptoms, risks,
+  protective behaviors, testing, and
+  vaccination](https://doi.org/10.1073/pnas.2111454118). *Proceedings of the
+  National Academy of Sciences* 118 (51) e2111454118.
 - D. P. Do and R. Frank (2021). [U.S. frontline workers and COVID-19 inequities](https://doi.org/10.1016/j.ypmed.2021.106833). *Preventive Medicine* 153, 106833.
 - W. C. King, M. Rubinstein, A. Reinhart, and R. J. Mejia (2021). [COVID-19 vaccine hesitancy January-May 2021 among 18–64 year old US adults by employment and occupation](https://doi.org/10.1016/j.pmedr.2021.101569). *Preventive Medicine Reports* 24, 101569.
 - C. H. Sudre, A. Keshet, M. S. Graham, A. D. Joshi, S. Shilo, H. Rossman, B. Murray, E. Molteni, K. Klaser, L. D. Canas, M. Antonelli, L. H. Nguyen, D. A. Drew, M. Modat, J. Capdevila Pujol, S. Ganesh, J. Wolf, T. Meir, A. T. Chan, C. J. Steves, T. D. Spector, J. S. Brownstein, E. Segal, S. Ourselin, and C. M. Astley (2021). [Anosmia, ageusia, and other COVID-19-like symptoms in association with a positive SARS-CoV-2 test, across six national digital surveillance platforms: an observational study](https://doi.org/10.1016/S2589-7500(21)00115-1). *The Lancet Digital Health* 3 (9), e577-e586.
diff --git a/content/people/headshots/bryan-wilder.jpg b/content/people/headshots/bryan-wilder.jpg
diff --git a/content/people/headshots/jerzy-wieczorek.jpg b/content/people/headshots/jerzy-wieczorek.jpg
diff --git a/content/people/index.md b/content/people/index.md
@@ -787,6 +787,18 @@ people:
   external: true
   team:
   - blog
+- firstName: Jerzy
+  lastName: Wieczorek
+  image: jerzy-wieczorek.jpg
+  affiliation: Colby College
+  team:
+  - contributors
+- firstName: Bryan
+  lastName: Wilder
+  image: bryan-wilder.jpg
+  affiliation: CMU/MLD
+  team:
+  - core 
 
 others: |
  MLD administrator Alison Chiocchi; CMU’s wonderful Communications, IT, Legal, OSP, and IRB teams, including Scott Ambrose, Amber Becker, Stacey Becker, Amanda Berneburg, Susan Brunner, Steve Chabassol, Cindy Chepanoske, Ethan Connor, Amy Coutu, John Dermott, Ed Garbade, Greg Gillotti, Akshaya Gupta, Scott Haas, Ryan Jackson, Rasha Kolia, Chris Kornell, Jason Maderer, Dave McMurtrie, Craig Miron, Roman Mitz, Matt Nagel, Allie Oswell, John Porco, Mark Power, Laura Raderman, Teri Reiche, Bob Rittiger, Edem Setodji, Jennifer Smith, Steve Snodgrass, Julia Sobol Dzurino, Byron Spice, Dom Travisano, Alex Visbisky, and Walter Wong; and the entire CMU senior leadership team.
diff --git a/package-lock.json b/package-lock.json
diff --git a/package.json b/package.json

-Original file line number
+Diff line change
 *.tgz
 .Rhistory
 *.log
 +*.lock