Merge pull request #2 from dfarrow0/main

welcome to 2020

Author: undefx

README.md

@@ -2,314 +2,14 @@
 [![Deploy Status](http://delphi.midas.cs.cmu.edu/~automation/public/github_deploy_repo/badge.php?repo=cmu-delphi/www-epivis)](#)
 
 # About
-An interactive tool for visualizing epidemiological time-series data.
-
-The site is live at http://delphi.midas.cs.cmu.edu/epivis/
-
-# Legacy Changelog
-````
-=== v39: 2017-12-04 ===
-   ./epivis.html
-      + source `quidel`
-   js/epidata.js
-      + source `quidel`
-   (by Lisheng)
-
-=== v38: 2017-02-15 ===
-   ./epivis.html
-      + 'run regression','reset' features
-   js/epivis.js
-	  + regression related member functions in Dataset class
-   js/treeview.js
-      * return full path for dataset in `getDatasets...()` functions
-   (by Lisheng)
-
-=== v37: 2017-02-07 ===
-   ./epivis.html
-      + source `flusurv`
-   js/epidata.js
-      + source `flusurv`
-
-=== v36: 2016-11-15 ===
-   ./epivis.html
-      * API update for `stateili` param `version`
-    js/epidata.js
-      * API update for `stateili` param `version`
-
-=== v35: 2016-11-14 ===
-   ./epivis.html
-      * link to 3rd party libs instead of hosting them
-
-=== v34: 2016-08-05 ===
-   ./epivis.html
-      + added description for authorization token under ILINet
-      (by Paul)
-
-=== v33: 2016-06-16 ===
-   js/epivis.js
-      + don't request focus if in an iframe
-
-=== v32: 2016-04-20 ===
-   js/epivis.js
-      + don't interpolate missing values (unless enabled)
-
-=== v31: 2016-04-16 ===
-   ./epivis.html
-      + location for source `cdc`
-   js/delphi_epidata.js
-      * from https://github.com/undefx/delphi-epidata
-   js/epidata.js
-      + location for source `cdc`
-
-=== v30: 2016-04-15 ===
-   ./epivis.html
-      + YYYYWW epiweek date column
-   js/csv.js
-      + YYYYWW epiweek date column
-
-=== v29: 2016-04-09 ===
-   ./epivis.html
-      + all locations for `nowcast`
-   js/epidata.js
-      * new `nowcast` start week
-
-=== v28: 2016-04-07 ===
-   ./epivis.html
-      + sources `cdc` and `sensors`
-      * createDataset handles different dates
-   js/delphi_epidata.js
-      * from https://github.com/undefx/delphi-epidata
-   js/epidata.js
-      + sources `cdc` and `sensors`
-
-=== v27: 2016-04-06 ===
-   ./epivis.html
-      + source `stateili`
-   js/delphi_epidata.js
-      * from https://github.com/undefx/delphi-epidata
-   js/epidata.js
-      + source `stateili`
-      * fixed first `ght` epiweek
-
-=== v26: 2016-04-01 ===
-   ./epivis.html
-      + census regions for fluview, ilinet, and twitter
-
-=== v25: 2016-03-22 ===
-   ./epivis.html
-      + added screenshot button and function
-
-=== v24: 2016-02-18 ===
-   ./epivis.html
-      + param `auth` for source `ilinet`
-   js/delphi_epidata.js
-      * from https://github.com/undefx/delphi-epidata
-   js/epidata.js
-      + param `auth` for source `ilinet`
-
-=== v23: 2016-01-29 ===
-   ./epivis.html
-      + signal `ght`
 
-=== v22: 2015-12-15 ===
-   ./epivis.html
-      + source `nowcast`
-      * fixed wording and default value for `fluview` lag parameter
-   js/delphi_epidata.js
-      * from https://github.com/undefx/delphi-epidata
-   js/epidata.js
-      + source `nowcast`
-
-=== v21: 2015-12-11 ===
-   ./epivis.html
-      + source `signals`
-   js/delphi_epidata.js
-      * from https://github.com/undefx/delphi-epidata
-   js/epidata.js
-      + source `signals`
-
-=== v20: 2015-12-03 ===
-   ./epivis.html
-      + source `ght`
-   css/epivis.css
-      * increased option_label width
-   js/delphi_epidata.js
-      * from https://github.com/undefx/delphi-epidata
-   js/epidata.js
-      + source `ght`
-
-=== v19: 2015-09-18 ===
-   js/epidata.js
-      + added `value` column for wiki
-
-=== v18: 2015-09-15 ===
-   ./epivis.html
-      + ILINet support
-   js/delphi_epidata.js
-      * from https://github.com/undefx/delphi-epidata
-   js/epidata.js
-      + ILINet support
-
-=== v17: 2015-08-20 ===
-   ./epivis.html
-      + NIDSS dengue support
-   js/delphi_epidata.js
-      * from https://github.com/undefx/delphi-epidata
-   js/epidata.js
-      + NIDSS dengue support
-      * NIDSS flu update
-
-=== v16: 2015-08-11 ===
-   ./epivis.html
-      + NIDSS support
-   js/delphi_epidata.js
-      + from https://github.com/undefx/delphi-epidata
-   js/epidata.js
-      + NIDSS support
-      + New wiki field
-      * wrapper for delphi_epidata.js
-
-=== v15: 2015-07-31 ===
-   ./epivis.html
-      + auth token for twitter
-   js/epidata.js
-      + auth token for twitter
-
-=== v14: 2015-07-24 ===
-   ./epivis.html
-      + parse CSVOptions from CSV comment
-      + auto load file when CSVOptions present
-      + bulk add/remove grouped datasets
-   js/csv.js
-      + ignore lines starting with '#'
-
-=== v13: 2015-07-23 ===
-   ./epivis.html
-      * createDataset requires kernel to be non-null
-      * fixed preview box wrapping
-   js/epivis.js
-      + range check for week in Date.fromEpiweek
-      * fix (hack) for week 53 in years with 52 weeks
-
-=== v12: 2015-07-09 ===
-   ./epivis.html
-      + draw custom line
-   js/epivis.js
-      * fixed autoscale with multiple datasets
-
-=== v11: 2015-07-03 ===
-   ./epivis.html
-      + meta viewport tag
-      + meta mobile-web-app-capable tag
-      + link to manifest.json
-      + link to icon.png
-      + new buttons for CSV, API, kernels
-      + fullscreen support
-      + android homescreen support
-      * improved dialog support
-      * better tooltip positioning
-      * hide tooltip after button click
-      * adjustments to top bar
-      * import via dialog
-      - "flag" buttons for UI layout
-      - sample CSV files
-   ./icon.png
-      + basic icon for android homescreen
-   ./manifest.json
-      + basic manifest for android homescreen
-   css/epivis.css
-      * increased size of top bar
-      * adjusted button look and feel
-      * changed import color scheme
-      - bottom section now inside dialog
-   js/epivis.js
-      * default dataset lineWidth 1 to 2
-      * various linting
-
-=== v10: 2015-07-02 ===
-   ./epivis.html
-      + 97 GFT cities
-      + UI tooltips for top-bar buttons
-   css/epivis.css
-      + tooltip class
-
-=== v9: 2015-06-30 ===
-   ./epivis.html
-      + experimental overlay/dialog
-   css/epivis.css
-      + overlay/dialog classes
-
-=== v8: 2015-06-24 ===
-   ./epivis.html
-      + twitter from Epidata API
-      + wiki from Epidata API
-      * major improvements to Epidata API
-      * tentatively enabled multiscale button
-   css/epivis.css
-      * some padding for option labels
-      * tree view width from 200px to 15%
-   js/epidata.js
-      + Delphi Epidata API (supporting all data sources)
-   js/epivis.js
-      + scale and vertical offset per dataset
-      + dataset scale by mean
-      * small tweaks for jsHint
-
-=== v7: 2015-06-23 ===
-   ./epivis.html
-      + page title
-      + more documentation for file loading
-      + fetch from Epidata API (FluView and GFT)
-      * better mime type detection (excel types)
-      * converted double quotes to single quotes
-   css/epivis.css
-      + extra classes for documentation
-   js/csv.js
-      + export CSV.DataGroup
-      * small syntax adjustments
-
-=== v6: 2015-03-24 ===
-   ./epivis.html
-      + automatic file preview
-
-=== v5: 2015-03-17 ===
-   ./epivis.html
-      + kernel: product
-   js/csv.js
-      * fixed loading without date column
-      * fixed loading 1-column CSV
-   js/epivis.js
-      + <Chart>.showPoints
-      + <Chart>.isShowingPoints
-   js/treeview.js
-      + <TreeView>.getAllDatasets
-
-=== v4: 2015-01-21 ===
-   ./epivis.html
-      + kernels: sum and iliplus
+An interactive tool for visualizing epidemiological time-series data.
 
-=== v3: 2015-01-20 ===
-   ./changelog.txt
-      + separate changelog file
-   ./epivis.html
-      + link to this changelog
-      + createDataset (very experimental)
-      + Kernels (kernel generators)
-      * fixed randomize button's id
-   css/epivis.css
-      + reasonable anchor colors
-   js/csv.js
-      * Use Date.fromEpiweek
-   js/epivis.js
-      + Date.fromEpiweek
-      + <Date>.toString
-   js/treeview.js
-      + <TreeView>.getSelectedDatasets
+The site is live at https://delphi.cmu.edu/epivis/epivis.html
 
-=== v2: 2014-12-22 ===
-   + randomize color button
-   + autoscale button
+For development, see the
+[EpiVis development guide](docs/epivis_development.md).
 
-=== v1: 2014-12-22 ===
-   * original version
-````
+Little piece of trivia: the first version of EpiVis was written on 2014-12-22.
+See the git history of this file for a legacy changelog which describes changes
+made prior to the migration to git around 2017.

deploy.json

@@ -3,19 +3,12 @@
   "version": 1,
   "actions": [
 
-    "// make changelog",
-    {
-      "type": "move",
-      "src": "README.md",
-      "dst": "site/changelog.txt"
-    },
-
     "// web sources",
     {
       "type": "move",
       "src": "site/",
       "dst": "/var/www/html/epivis/",
-      "match": "^.*\\.(html|php|txt)$",
+      "match": "^.*\\.(html|php)$",
       "add-header-comment": true
     },
     {

dev/docker/web/epivis/Dockerfile

@@ -0,0 +1,11 @@
+# start with the `delphi_web` image
+FROM delphi_web
+
+# deploy the EpiVis website (see `www-epivis/deploy.json`)
+COPY repos/delphi/www-epivis/site /var/www/html/epivis
+
+# grab the javascript client library for the Epidata API (it's not included in
+# this repo)
+COPY repos/delphi/delphi-epidata/src/client/delphi_epidata.js /var/www/html/epidata/lib/delphi_epidata.min.js
+
+RUN chmod o+r /var/www/html/epivis/* /var/www/html/epidata/*

dev/docker/web/epivis/README.md

@@ -0,0 +1,13 @@
+# `delphi_web_epivis`
+
+This image starts with Delphi's web server and adds the sources necessary for
+hosting EpiVis, Delphi's epidata visualization website.
+
+To start a container from this image, run:
+
+```bash
+docker run --rm -p 10080:80 --name delphi_web_epivis delphi_web_epivis
+```
+
+You should be able to view the site by visiting (or `curl`ing)
+http://localhost:10080/epivis/epivis.html.