From d122f576f04f0bcc2cadd05ad72a9d5e429b11ae Mon Sep 17 00:00:00 2001
From: Samuel Gratzl <sam@sgratzl.com>
Date: Wed, 30 Jun 2021 15:09:49 +0200
Subject: [PATCH 1/3] docs: fix client links to published packages/source

---
 docs/api/covid_hosp.md                 | 2 +-
 docs/api/covid_hosp_facility.md        | 2 +-
 docs/api/covid_hosp_facility_lookup.md | 2 +-
 docs/api/covidcast_meta.md             | 2 +-
 docs/api/flusurv.md                    | 2 +-
 docs/api/fluview.md                    | 2 +-
 docs/api/fluview_clinical.md           | 2 +-
 docs/api/gft.md                        | 2 +-
 docs/api/nidss_dengue.md               | 2 +-
 docs/api/nidss_flu.md                  | 2 +-
 docs/api/nowcast.md                    | 2 +-
 docs/api/sensors.md                    | 2 +-
 docs/api/wiki.md                       | 2 +-
 docs/new_endpoint_tutorial.md          | 6 +++---
 14 files changed, 16 insertions(+), 16 deletions(-)

diff --git a/docs/api/covid_hosp.md b/docs/api/covid_hosp.md
index ca312e3ed..863d7c48a 100644
--- a/docs/api/covid_hosp.md
+++ b/docs/api/covid_hosp.md
@@ -143,7 +143,7 @@ https://delphi.cmu.edu/epidata/covid_hosp_state_timeseries/?states=MA&dates=2020
 
 # Code Samples
 
-Libraries are available for [JavaScript](../../src/client/delphi_epidata.js), [Python](../../src/client/delphi_epidata.py), and [R](../../src/client/delphi_epidata.R).
+Libraries are available for [JavaScript](https://github.com/cmu-delphi/delphi-epidata/blob/main/src/client/delphi_epidata.js), [Python](https://pypi.org/project/delphi-epidata/), and [R](https://github.com/cmu-delphi/delphi-epidata/blob/dev/src/client/delphi_epidata.R).
 The following sample shows how to import the library and fetch MA on 2020-05-10
 (per most recent issue).
 
diff --git a/docs/api/covid_hosp_facility.md b/docs/api/covid_hosp_facility.md
index 82508d5b1..f85f324d0 100644
--- a/docs/api/covid_hosp_facility.md
+++ b/docs/api/covid_hosp_facility.md
@@ -190,7 +190,7 @@ https://delphi.cmu.edu/epidata/covid_hosp_facility/?hospital_pks=390119&collecti
 
 # Code Samples
 
-Libraries are available for [JavaScript](../../src/client/delphi_epidata.js), [Python](../../src/client/delphi_epidata.py), and [R](../../src/client/delphi_epidata.R).
+Libraries are available for [JavaScript](https://github.com/cmu-delphi/delphi-epidata/blob/main/src/client/delphi_epidata.js), [Python](https://pypi.org/project/delphi-epidata/), and [R](https://github.com/cmu-delphi/delphi-epidata/blob/dev/src/client/delphi_epidata.R).
 The following sample shows how to import the library and fetch Moses Taylor
 Hospital (Scranton, PA) on the first collection week of December 2020 (per most
 recent issue).
diff --git a/docs/api/covid_hosp_facility_lookup.md b/docs/api/covid_hosp_facility_lookup.md
index bd98c4788..1fea970fe 100644
--- a/docs/api/covid_hosp_facility_lookup.md
+++ b/docs/api/covid_hosp_facility_lookup.md
@@ -99,7 +99,7 @@ https://delphi.cmu.edu/epidata/covid_hosp_facility_lookup/?city=southlake
 
 # Code Samples
 
-Libraries are available for [JavaScript](../../src/client/delphi_epidata.js), [Python](../../src/client/delphi_epidata.py), and [R](../../src/client/delphi_epidata.R).
+Libraries are available for [JavaScript](https://github.com/cmu-delphi/delphi-epidata/blob/main/src/client/delphi_epidata.js), [Python](https://pypi.org/project/delphi-epidata/), and [R](https://github.com/cmu-delphi/delphi-epidata/blob/dev/src/client/delphi_epidata.R).
 The following sample shows how to import the library and fetch facilities in
 the city of Southlake (TX).
 
diff --git a/docs/api/covidcast_meta.md b/docs/api/covidcast_meta.md
index 67f8b5867..82c4579e2 100644
--- a/docs/api/covidcast_meta.md
+++ b/docs/api/covidcast_meta.md
@@ -73,7 +73,7 @@ https://api.covidcast.cmu.edu/epidata/covidcast_meta/
 
 ## Code Samples
 
-Libraries are available for [JavaScript](../../src/client/delphi_epidata.js), [Python](../../src/client/delphi_epidata.py), and [R](../../src/client/delphi_epidata.R).
+Libraries are available for [JavaScript](https://github.com/cmu-delphi/delphi-epidata/blob/main/src/client/delphi_epidata.js), [Python](https://pypi.org/project/delphi-epidata/), and [R](https://github.com/cmu-delphi/delphi-epidata/blob/dev/src/client/delphi_epidata.R).
 The following samples show how to import the library and fetch Delphi's COVID-19 Surveillance Streams metadata.
 
 ### JavaScript (in a web browser)
diff --git a/docs/api/flusurv.md b/docs/api/flusurv.md
index c04923750..865a0977e 100644
--- a/docs/api/flusurv.md
+++ b/docs/api/flusurv.md
@@ -105,7 +105,7 @@ https://delphi.cmu.edu/epidata/flusurv/?locations=ca&epiweeks=202001
 
 # Code Samples
 
-Libraries are available for [JavaScript](../../src/client/delphi_epidata.js), [Python](../../src/client/delphi_epidata.py), and [R](../../src/client/delphi_epidata.R).
+Libraries are available for [JavaScript](https://github.com/cmu-delphi/delphi-epidata/blob/main/src/client/delphi_epidata.js), [Python](https://pypi.org/project/delphi-epidata/), and [R](https://github.com/cmu-delphi/delphi-epidata/blob/dev/src/client/delphi_epidata.R).
 The following samples show how to import the library and fetch CA FluView Clinical data for epiweeks `201940` and `202001-202010` (11 weeks total).
 
 ### JavaScript (in a web browser)
diff --git a/docs/api/fluview.md b/docs/api/fluview.md
index ad37c32c0..7dbdd5518 100644
--- a/docs/api/fluview.md
+++ b/docs/api/fluview.md
@@ -120,7 +120,7 @@ https://delphi.cmu.edu/epidata/fluview/?regions=nat&epiweeks=201453&issues=20150
 
 # Code Samples
 
-Libraries are available for [JavaScript](../../src/client/delphi_epidata.js), [Python](../../src/client/delphi_epidata.py), and [R](../../src/client/delphi_epidata.R).
+Libraries are available for [JavaScript](https://github.com/cmu-delphi/delphi-epidata/blob/main/src/client/delphi_epidata.js), [Python](https://pypi.org/project/delphi-epidata/), and [R](https://github.com/cmu-delphi/delphi-epidata/blob/dev/src/client/delphi_epidata.R).
 The following samples show how to import the library and fetch national FluView data for epiweeks `201440` and `201501-201510` (11 weeks total).
 
 
diff --git a/docs/api/fluview_clinical.md b/docs/api/fluview_clinical.md
index 11906bde7..2e6fb0aa0 100644
--- a/docs/api/fluview_clinical.md
+++ b/docs/api/fluview_clinical.md
@@ -94,7 +94,7 @@ https://delphi.cmu.edu/epidata/fluview_clinical/?regions=nat&epiweeks=202001
 
 # Code Samples
 
-Libraries are available for [JavaScript](../../src/client/delphi_epidata.js), [Python](../../src/client/delphi_epidata.py), and [R](../../src/client/delphi_epidata.R).
+Libraries are available for [JavaScript](https://github.com/cmu-delphi/delphi-epidata/blob/main/src/client/delphi_epidata.js), [Python](https://pypi.org/project/delphi-epidata/), and [R](https://github.com/cmu-delphi/delphi-epidata/blob/dev/src/client/delphi_epidata.R).
 The following samples show how to import the library and fetch national FluView Clinical data for epiweeks `201940` and `202001-202010` (11 weeks total).
 
 ### JavaScript (in a web browser)
diff --git a/docs/api/gft.md b/docs/api/gft.md
index b373b517b..ed43eeecb 100644
--- a/docs/api/gft.md
+++ b/docs/api/gft.md
@@ -69,7 +69,7 @@ https://delphi.cmu.edu/epidata/gft/?locations=nat&epiweeks=201501
 
 # Code Samples
 
-Libraries are available for [JavaScript](../../src/client/delphi_epidata.js), [Python](../../src/client/delphi_epidata.py), and [R](../../src/client/delphi_epidata.R).
+Libraries are available for [JavaScript](https://github.com/cmu-delphi/delphi-epidata/blob/main/src/client/delphi_epidata.js), [Python](https://pypi.org/project/delphi-epidata/), and [R](https://github.com/cmu-delphi/delphi-epidata/blob/dev/src/client/delphi_epidata.R).
 The following samples show how to import the library and fetch Google Flu Trends data for epiweeks `201440` and `201501-201510` (11 weeks total).
 
 ### JavaScript (in a web browser)
diff --git a/docs/api/nidss_dengue.md b/docs/api/nidss_dengue.md
index eec6cb737..a051cef83 100644
--- a/docs/api/nidss_dengue.md
+++ b/docs/api/nidss_dengue.md
@@ -69,7 +69,7 @@ https://delphi.cmu.edu/epidata/nidss_dengue/?locations=nationwide&epiweeks=20150
 
 # Code Samples
 
-Libraries are available for [JavaScript](../../src/client/delphi_epidata.js), [Python](../../src/client/delphi_epidata.py), and [R](../../src/client/delphi_epidata.R).
+Libraries are available for [JavaScript](https://github.com/cmu-delphi/delphi-epidata/blob/main/src/client/delphi_epidata.js), [Python](https://pypi.org/project/delphi-epidata/), and [R](https://github.com/cmu-delphi/delphi-epidata/blob/dev/src/client/delphi_epidata.R).
 The following samples show how to import the library and fetch national NIDSS Dengue data for epiweeks `201440` and `201501-201510` (11 weeks total).
 
 ### JavaScript (in a web browser)
diff --git a/docs/api/nidss_flu.md b/docs/api/nidss_flu.md
index 591493531..7d08bf0b7 100644
--- a/docs/api/nidss_flu.md
+++ b/docs/api/nidss_flu.md
@@ -90,7 +90,7 @@ https://delphi.cmu.edu/epidata/nidss_flu/?regions=nationwide&epiweeks=201501
 
 # Code Samples
 
-Libraries are available for [JavaScript](../../src/client/delphi_epidata.js), [Python](../../src/client/delphi_epidata.py), and [R](../../src/client/delphi_epidata.R).
+Libraries are available for [JavaScript](https://github.com/cmu-delphi/delphi-epidata/blob/main/src/client/delphi_epidata.js), [Python](https://pypi.org/project/delphi-epidata/), and [R](https://github.com/cmu-delphi/delphi-epidata/blob/dev/src/client/delphi_epidata.R).
 The following samples show how to import the library and fetch national NIDSS Flu data for epiweeks `201440` and `201501-201510` (11 weeks total).
 
 ### JavaScript (in a web browser)
diff --git a/docs/api/nowcast.md b/docs/api/nowcast.md
index eb295659e..f724f7a97 100644
--- a/docs/api/nowcast.md
+++ b/docs/api/nowcast.md
@@ -73,7 +73,7 @@ https://delphi.cmu.edu/epidata/nowcast/?locations=nat&epiweeks=202001
 
 # Code Samples
 
-Libraries are available for [JavaScript](../../src/client/delphi_epidata.js), [Python](../../src/client/delphi_epidata.py), and [R](../../src/client/delphi_epidata.R).
+Libraries are available for [JavaScript](https://github.com/cmu-delphi/delphi-epidata/blob/main/src/client/delphi_epidata.js), [Python](https://pypi.org/project/delphi-epidata/), and [R](https://github.com/cmu-delphi/delphi-epidata/blob/dev/src/client/delphi_epidata.R).
 The following samples show how to import the library and fetch national ILI Nearby data for epiweeks `201940` and `202001-202010` (11 weeks total).
 
 ### JavaScript (in a web browser)
diff --git a/docs/api/sensors.md b/docs/api/sensors.md
index e4dc93e02..03967faef 100644
--- a/docs/api/sensors.md
+++ b/docs/api/sensors.md
@@ -90,7 +90,7 @@ https://delphi.cmu.edu/epidata/sensors/?names=sar3&locations=nat&epiweeks=202001
 
 # Code Samples
 
-Libraries are available for [JavaScript](../../src/client/delphi_epidata.js), [Python](../../src/client/delphi_epidata.py), and [R](../../src/client/delphi_epidata.R).
+Libraries are available for [JavaScript](https://github.com/cmu-delphi/delphi-epidata/blob/main/src/client/delphi_epidata.js), [Python](https://pypi.org/project/delphi-epidata/), and [R](https://github.com/cmu-delphi/delphi-epidata/blob/dev/src/client/delphi_epidata.R).
 The following samples show how to import the library and fetch national Delphi's Digital Surveillance SAR3 Sensor data for epiweeks `201940` and `202001-202010` (11 weeks total).
 
 ### JavaScript (in a web browser)
diff --git a/docs/api/wiki.md b/docs/api/wiki.md
index 58249b394..5fd56116a 100644
--- a/docs/api/wiki.md
+++ b/docs/api/wiki.md
@@ -107,7 +107,7 @@ https://delphi.cmu.edu/epidata/wiki/?language=en&articles=influenza&dates=202001
 
 # Code Samples
 
-Libraries are available for [JavaScript](../../src/client/delphi_epidata.js), [Python](../../src/client/delphi_epidata.py), and [R](../../src/client/delphi_epidata.R).
+Libraries are available for [JavaScript](https://github.com/cmu-delphi/delphi-epidata/blob/main/src/client/delphi_epidata.js), [Python](https://pypi.org/project/delphi-epidata/), and [R](https://github.com/cmu-delphi/delphi-epidata/blob/dev/src/client/delphi_epidata.R).
 The following samples show how to import the library and fetch national Wikipedia Access data for article "influenza" on
 epiweeks `201940` and `202001-202010` (11 weeks total) for hours 0 and 12 in English.
 
diff --git a/docs/new_endpoint_tutorial.md b/docs/new_endpoint_tutorial.md
index c5739768c..a32530d3f 100644
--- a/docs/new_endpoint_tutorial.md
+++ b/docs/new_endpoint_tutorial.md
@@ -83,7 +83,7 @@ what this looks like.
 
 Here's what we add to each client:
 
-- [`delphi_epidata.js`](../src/client/delphi_epidata.js)
+- [`delphi_epidata.js`](https://github.com/cmu-delphi/delphi-epidata/blob/main/src/client/delphi_epidata.js)
     ```javascript
     // within createEpidataAsync
     return {
@@ -110,7 +110,7 @@ Here's what we add to each client:
     }
     ```
 
-- [`delphi_epidata.py`](../src/client/delphi_epidata.py)
+- [`delphi_epidata.py`](https://pypi.org/project/delphi-epidata/)
 
     Note that this file, unlike the others, is released as a public package,
     available to install easily through Python's `pip` tool. That package should
@@ -130,7 +130,7 @@ Here's what we add to each client:
       return Epidata._request(params)
     ```
 
-- [`delphi_epidata.R`](../src/client/delphi_epidata.R)
+- [`delphi_epidata.R`](https://github.com/cmu-delphi/delphi-epidata/blob/dev/src/client/delphi_epidata.R)
 
     ```R
     # Fetch FluView metadata

From 6b671c08e0b59c7c290053c2b8ff0bb77fe4a0a8 Mon Sep 17 00:00:00 2001
From: Samuel Gratzl <sam@sgratzl.com>
Date: Wed, 30 Jun 2021 15:21:30 +0200
Subject: [PATCH 2/3] docs: fix more relative links

---
 docs/api/afhsb.md             |  2 +-
 docs/api/cdc.md               |  2 +-
 docs/api/flusurv.md           |  2 +-
 docs/api/fluview.md           |  4 ++--
 docs/api/fluview_clinical.md  |  2 +-
 docs/api/gft.md               |  4 ++--
 docs/api/ght.md               |  2 +-
 docs/api/nidss_dengue.md      |  4 ++--
 docs/api/nidss_flu.md         |  4 ++--
 docs/api/nowcast.md           |  4 ++--
 docs/api/quidel.md            |  2 +-
 docs/api/sensors.md           |  2 +-
 docs/api/twitter.md           |  4 ++--
 docs/api/wiki.md              |  4 ++--
 docs/epidata_development.md   | 14 +++++++-------
 docs/new_endpoint_tutorial.md |  6 +++---
 16 files changed, 31 insertions(+), 31 deletions(-)

diff --git a/docs/api/afhsb.md b/docs/api/afhsb.md
index fccdcee78..f0e29ca32 100644
--- a/docs/api/afhsb.md
+++ b/docs/api/afhsb.md
@@ -31,7 +31,7 @@ See [this documentation](README.md) for details on specifying epiweeks, dates, a
 | --- | --- | --- |
 | `auth` | password | string |
 | `epiweeks` | epiweeks | `list` of epiweeks |
-| `locations` | locations | `list` of [region](../../labels/regions.txt), [state](../../labels/states.txt), or 3-letter country code labels |
+| `locations` | locations | `list` of [region](https://github.com/cmu-delphi/delphi-epidata/blob/main/labels/regions.txt), [state](https://github.com/cmu-delphi/delphi-epidata/blob/main/labels/states.txt), or 3-letter country code labels |
 | `flu_types` | flu types | `list` of disjoint (`flu1`, `flu2-flu1`, `flu3-flu2`, `ili-flu3`) or subset (`flu2`, `flu3`, `ili`) flu type labels |
 
 ## Response
diff --git a/docs/api/cdc.md b/docs/api/cdc.md
index b79e8927b..97a6fc478 100644
--- a/docs/api/cdc.md
+++ b/docs/api/cdc.md
@@ -31,7 +31,7 @@ See [this documentation](README.md) for details on specifying epiweeks, dates, a
 | --- | --- | --- |
 | `auth` | password | string |
 | `epiweeks` | epiweeks | `list` of epiweeks |
-| `locations` | locations | `list` of [region](../../labels/regions.txt)/[state](../../labels/states.txt) labels <!-- TODO: check --> |
+| `locations` | locations | `list` of [region](https://github.com/cmu-delphi/delphi-epidata/blob/main/labels/regions.txt)/[state](https://github.com/cmu-delphi/delphi-epidata/blob/main/labels/states.txt) labels <!-- TODO: check --> |
 
 ## Response
 
diff --git a/docs/api/flusurv.md b/docs/api/flusurv.md
index 865a0977e..fb990220a 100644
--- a/docs/api/flusurv.md
+++ b/docs/api/flusurv.md
@@ -37,7 +37,7 @@ See [this documentation](README.md) for details on specifying epiweeks, dates, a
 | Parameter | Description | Type |
 | --- | --- | --- |
 | `epiweeks` | epiweeks | `list` of epiweeks |
-| `locations` | locations | `list` of [location](../../labels/flusurv_locations.txt) labels |
+| `locations` | locations | `list` of [location](https://github.com/cmu-delphi/delphi-epidata/blob/main/labels/flusurv_locations.txt) labels |
 
 ### Optional
 
diff --git a/docs/api/fluview.md b/docs/api/fluview.md
index 7dbdd5518..688089d25 100644
--- a/docs/api/fluview.md
+++ b/docs/api/fluview.md
@@ -18,7 +18,7 @@ General topics not specific to any particular endpoint are discussed in the
 Influenza-like illness (ILI) from U.S. Outpatient Influenza-like Illness Surveillance Network (ILINet).
  - Data source: [United States Centers for Disease Control and Prevention](http://gis.cdc.gov/grasp/fluview/fluportaldashboard.html) (CDC)
  - Temporal Resolution: Weekly* from 1997w40
- - Spatial Resolution: National, [HHS regions](http://www.hhs.gov/iea/regional/), [Census divisions](http://www.census.gov/econ/census/help/geography/regions_and_divisions.html), most States and Territories, and some Cities (full list [here](../../src/acquisition/fluview/fluview_locations.py))
+ - Spatial Resolution: National, [HHS regions](http://www.hhs.gov/iea/regional/), [Census divisions](http://www.census.gov/econ/census/help/geography/regions_and_divisions.html), most States and Territories, and some Cities (full list [here](https://github.com/cmu-delphi/delphi-epidata/blob/main/src/acquisition/fluview/fluview_locations.py))
  - Open access
 
 \* Data is usually released on Friday
@@ -36,7 +36,7 @@ See [this documentation](README.md) for details on specifying epiweeks, dates, a
 | Parameter | Description | Type |
 | --- | --- | --- |
 | `epiweeks` | epiweeks | `list` of epiweeks |
-| `regions` | regions | `list` of [region](../../labels/regions.txt) labels |
+| `regions` | regions | `list` of [region](https://github.com/cmu-delphi/delphi-epidata/blob/main/labels/regions.txt) labels |
 
 ### Optional
 
diff --git a/docs/api/fluview_clinical.md b/docs/api/fluview_clinical.md
index 2e6fb0aa0..5583abcc4 100644
--- a/docs/api/fluview_clinical.md
+++ b/docs/api/fluview_clinical.md
@@ -31,7 +31,7 @@ See [this documentation](README.md) for details on specifying epiweeks, dates, a
 | Parameter | Description | Type |
 | --- | --- | --- |
 | `epiweeks` | epiweeks | `list` of epiweeks |
-| `regions` | regions | `list` of [region](../../labels/regions.txt) labels |
+| `regions` | regions | `list` of [region](https://github.com/cmu-delphi/delphi-epidata/blob/main/labels/regions.txt) labels |
 
 ### Optional
 
diff --git a/docs/api/gft.md b/docs/api/gft.md
index ed43eeecb..21d9676fb 100644
--- a/docs/api/gft.md
+++ b/docs/api/gft.md
@@ -18,7 +18,7 @@ General topics not specific to any particular endpoint are discussed in the
 Estimate of influenza activity based on volume of certain search queries. Google has discontinued Flu Trends, and this is now a static endpoint.
  - Source: [Google](https://www.google.org/flutrends/)
  - Temporal Resolution: Weekly from 2003w40 until 2015w32
- - Spatial Resolution: National, [HHS regions](http://www.hhs.gov/iea/regional/) ([1+10](../../labels/regions.txt)); by state/territory ([50+1](../../labels/states.txt)); and by city ([97](../../labels/cities.txt))
+ - Spatial Resolution: National, [HHS regions](http://www.hhs.gov/iea/regional/) ([1+10](https://github.com/cmu-delphi/delphi-epidata/blob/main/labels/regions.txt)); by state/territory ([50+1](https://github.com/cmu-delphi/delphi-epidata/blob/main/labels/states.txt)); and by city ([97](https://github.com/cmu-delphi/delphi-epidata/blob/main/labels/cities.txt))
  - Open access
 
 # The API
@@ -34,7 +34,7 @@ See [this documentation](README.md) for details on specifying epiweeks, dates, a
 | Parameter | Description | Type |
 | --- | --- | --- |
 | `epiweeks` | epiweeks | `list` of epiweeks |
-| `locations` | locations | `list` of [region](../../labels/regions.txt)/[state](../../labels/states.txt)/[city](../../labels/cities.txt) labels |
+| `locations` | locations | `list` of [region](https://github.com/cmu-delphi/delphi-epidata/blob/main/labels/regions.txt)/[state](https://github.com/cmu-delphi/delphi-epidata/blob/main/labels/states.txt)/[city](https://github.com/cmu-delphi/delphi-epidata/blob/main/labels/cities.txt) labels |
 
 ## Response
 
diff --git a/docs/api/ght.md b/docs/api/ght.md
index 2bc6f935a..db333ef6c 100644
--- a/docs/api/ght.md
+++ b/docs/api/ght.md
@@ -31,7 +31,7 @@ See [this documentation](README.md) for details on specifying epiweeks, dates, a
 | --- | --- | --- |
 | `auth` | password | string |
 | `epiweeks` | epiweeks | `list` of epiweeks |
-| `locations` | locations | `list` of [state](../../labels/states.txt) and/or `US` labels |
+| `locations` | locations | `list` of [state](https://github.com/cmu-delphi/delphi-epidata/blob/main/labels/states.txt) and/or `US` labels |
 | `query` | search query or topic ID (see https://www.freebase.com/) | string |
 
 ## Response
diff --git a/docs/api/nidss_dengue.md b/docs/api/nidss_dengue.md
index a051cef83..330963ad6 100644
--- a/docs/api/nidss_dengue.md
+++ b/docs/api/nidss_dengue.md
@@ -18,7 +18,7 @@ General topics not specific to any particular endpoint are discussed in the
 Counts of confirmed dengue cases from Taiwan's NIDSS.
  - Data source: [Taiwan CDC](http://nidss.cdc.gov.tw/en/SingleDisease.aspx?dc=1&dt=4&disease=061&position=1)
  - Temporal Resolution: Weekly from 2003w01
- - Spatial Resolution: By [hexchotomy region](https://en.wikipedia.org/wiki/Regions_of_Taiwan#Hexchotomy) ([6+1](../../labels/nidss_regions.txt)) and by [city/county](https://en.wikipedia.org/wiki/List_of_administrative_divisions_of_Taiwan) ([22](../../labels/nidss_locations.txt))
+ - Spatial Resolution: By [hexchotomy region](https://en.wikipedia.org/wiki/Regions_of_Taiwan#Hexchotomy) ([6+1](https://github.com/cmu-delphi/delphi-epidata/blob/main/labels/nidss_regions.txt)) and by [city/county](https://en.wikipedia.org/wiki/List_of_administrative_divisions_of_Taiwan) ([22](https://github.com/cmu-delphi/delphi-epidata/blob/main/labels/nidss_locations.txt))
  - Open access
 
 # The API
@@ -34,7 +34,7 @@ See [this documentation](README.md) for details on specifying epiweeks, dates, a
 | Parameter | Description | Type |
 | --- | --- | --- |
 | `epiweeks` | epiweeks | `list` of epiweeks |
-| `locations` | locations | `list` of [region](../../labels/nidss_regions.txt) and/or [location](../../labels/nidss_locations.txt) labels |
+| `locations` | locations | `list` of [region](https://github.com/cmu-delphi/delphi-epidata/blob/main/labels/nidss_regions.txt) and/or [location](https://github.com/cmu-delphi/delphi-epidata/blob/main/labels/nidss_locations.txt) labels |
 
 ## Response
 
diff --git a/docs/api/nidss_flu.md b/docs/api/nidss_flu.md
index 7d08bf0b7..8231aa0d7 100644
--- a/docs/api/nidss_flu.md
+++ b/docs/api/nidss_flu.md
@@ -18,7 +18,7 @@ General topics not specific to any particular endpoint are discussed in the
 Outpatient ILI from Taiwan's National Infectious Disease Statistics System (NIDSS).
  - Source: [Taiwan CDC](http://nidss.cdc.gov.tw/en/CDCWNH01.aspx?dc=wnh)
  - Temporal Resolution: Weekly* from 2008w14
- - Spatial Resolution: By [hexchotomy region](https://en.wikipedia.org/wiki/Regions_of_Taiwan#Hexchotomy) ([6+1](../../labels/nidss_regions.txt))
+ - Spatial Resolution: By [hexchotomy region](https://en.wikipedia.org/wiki/Regions_of_Taiwan#Hexchotomy) ([6+1](https://github.com/cmu-delphi/delphi-epidata/blob/main/labels/nidss_regions.txt))
  - Open access
 
 \* Data is usually released on Tuesday
@@ -36,7 +36,7 @@ See [this documentation](README.md) for details on specifying epiweeks, dates, a
 | Parameter | Description | Type |
 | --- | --- | --- |
 | `epiweeks` | epiweeks | `list` of epiweeks |
-| `regions` | regions | `list` of [region](../../labels/nidss_regions.txt) labels |
+| `regions` | regions | `list` of [region](https://github.com/cmu-delphi/delphi-epidata/blob/main/labels/nidss_regions.txt) labels |
 
 ### Optional
 
diff --git a/docs/api/nowcast.md b/docs/api/nowcast.md
index f724f7a97..51f33835c 100644
--- a/docs/api/nowcast.md
+++ b/docs/api/nowcast.md
@@ -18,7 +18,7 @@ General topics not specific to any particular endpoint are discussed in the
 A nowcast of U.S. national, regional, and state-level (weighted) %ILI, available seven days (regionally) or five days (state-level) before the first ILINet report for the corresponding week.
  - Source: [Delphi's ILI Nearby system](https://delphi.cmu.edu/nowcast/)
  - Temporal Resolution: Weekly, from 2010w30*
- - Spatial Resolution: National, [HHS regions](http://www.hhs.gov/iea/regional/), [Census divisions](http://www.census.gov/econ/census/help/geography/regions_and_divisions.html) ([1+10+9](../../labels/regions.txt)), and by state/territory ([51](../../labels/states.txt))
+ - Spatial Resolution: National, [HHS regions](http://www.hhs.gov/iea/regional/), [Census divisions](http://www.census.gov/econ/census/help/geography/regions_and_divisions.html) ([1+10+9](https://github.com/cmu-delphi/delphi-epidata/blob/main/labels/regions.txt)), and by state/territory ([51](https://github.com/cmu-delphi/delphi-epidata/blob/main/labels/states.txt))
  - Open access
 
 \* Data is usually released on Friday and updated on Sunday and Monday
@@ -36,7 +36,7 @@ See [this documentation](README.md) for details on specifying epiweeks, dates, a
 | Parameter | Description | Type |
 | --- | --- | --- |
 | `epiweeks` | epiweeks | `list` of epiweeks |
-| `locations` | locations | `list` of [region](../../labels/regions.txt)/[state](../../labels/states.txt) labels |
+| `locations` | locations | `list` of [region](https://github.com/cmu-delphi/delphi-epidata/blob/main/labels/regions.txt)/[state](https://github.com/cmu-delphi/delphi-epidata/blob/main/labels/states.txt) labels |
 
 ## Response
 
diff --git a/docs/api/quidel.md b/docs/api/quidel.md
index 2e269810f..3f5c39115 100644
--- a/docs/api/quidel.md
+++ b/docs/api/quidel.md
@@ -33,7 +33,7 @@ See [this documentation](README.md) for details on specifying epiweeks, dates, a
 | --- | --- | --- |
 | `auth` | password | string |
 | `epiweeks` | epiweeks | `list` of epiweeks |
-| `locations` | locations | `list` of `hhs<#>` [region](../../labels/regions.txt) labels |
+| `locations` | locations | `list` of `hhs<#>` [region](https://github.com/cmu-delphi/delphi-epidata/blob/main/labels/regions.txt) labels |
 
 ## Response
 
diff --git a/docs/api/sensors.md b/docs/api/sensors.md
index 03967faef..a00669d13 100644
--- a/docs/api/sensors.md
+++ b/docs/api/sensors.md
@@ -40,7 +40,7 @@ See [this documentation](README.md) for details on specifying epiweeks, dates, a
 | Parameter | Description | Type |
 | --- | --- | --- |
 | `epiweeks` | epiweeks | `list` of epiweeks |
-| `locations` | locations | `list` of [region](../../labels/regions.txt)/[state](../../labels/states.txt) labels <!-- TODO: check --> |
+| `locations` | locations | `list` of [region](https://github.com/cmu-delphi/delphi-epidata/blob/main/labels/regions.txt)/[state](https://github.com/cmu-delphi/delphi-epidata/blob/main/labels/states.txt) labels <!-- TODO: check --> |
 | `names` | sensor names | `list` of string |
 
 Notes:
diff --git a/docs/api/twitter.md b/docs/api/twitter.md
index 2bdb415a8..10564dcf9 100644
--- a/docs/api/twitter.md
+++ b/docs/api/twitter.md
@@ -18,7 +18,7 @@ General topics not specific to any particular endpoint are discussed in the
 Estimate of influenza activity based on analysis of language used in tweets.
  - Source: [HealthTweets](http://www.healthtweets.org/)
  - Temporal Resolution: Daily and weekly from 2011-12-01 (2011w48)
- - Spatial Resolution: National, [HHS regions](http://www.hhs.gov/iea/regional/), and [Census divisions](http://www.census.gov/econ/census/help/geography/regions_and_divisions.html) ([1+10+9](../../labels/regions.txt)); and by state/territory ([51](../../labels/states.txt))
+ - Spatial Resolution: National, [HHS regions](http://www.hhs.gov/iea/regional/), and [Census divisions](http://www.census.gov/econ/census/help/geography/regions_and_divisions.html) ([1+10+9](https://github.com/cmu-delphi/delphi-epidata/blob/main/labels/regions.txt)); and by state/territory ([51](https://github.com/cmu-delphi/delphi-epidata/blob/main/labels/states.txt))
  - Restricted access: Delphi doesn't have permission to share this dataset
 
 # The API
@@ -34,7 +34,7 @@ See [this documentation](README.md) for details on specifying epiweeks, dates, a
 | Parameter | Description | Type |
 | --- | --- | --- |
 | `auth` | password | string |
-| `locations` | locations | `list` of [region](../../labels/regions.txt)/[state](../../labels/states.txt) labels |
+| `locations` | locations | `list` of [region](https://github.com/cmu-delphi/delphi-epidata/blob/main/labels/regions.txt)/[state](https://github.com/cmu-delphi/delphi-epidata/blob/main/labels/states.txt) labels |
 | `dates` | dates | `list` of dates |
 | `epiweeks` | epiweeks | `list` of epiweeks |
 
diff --git a/docs/api/wiki.md b/docs/api/wiki.md
index 5fd56116a..81bc105e2 100644
--- a/docs/api/wiki.md
+++ b/docs/api/wiki.md
@@ -19,7 +19,7 @@ Number of page visits for selected English, Influenza-related wikipedia articles
  - Source: [Wikimedia](https://dumps.wikimedia.org/other/pagecounts-raw/)
  - Temporal Resolution: Hourly, daily, and weekly from 2007-12-09 (2007w50)
  - Spatial Resolution: N/A
- - Other resolution: By article ([54](../../labels/articles.txt))
+ - Other resolution: By article ([54](https://github.com/cmu-delphi/delphi-epidata/blob/main/labels/articles.txt))
  - Open access
 
 # The API
@@ -34,7 +34,7 @@ See [this documentation](README.md) for details on specifying epiweeks, dates, a
 
 | Parameter | Description | Type |
 | --- | --- | --- |
-| `articles` | articles | list of [articles](../../labels/articles.md) |
+| `articles` | articles | list of [articles](https://github.com/cmu-delphi/delphi-epidata/blob/main/labels/articles.md) |
 | `language` | language (currently `en`, `es`, and `pt` supported) | string |
 | `dates` | dates | `list` of dates |
 | `epiweeks` | epiweeks | `list` of epiweeks |
diff --git a/docs/epidata_development.md b/docs/epidata_development.md
index 87602f8f0..a0cd0acbb 100644
--- a/docs/epidata_development.md
+++ b/docs/epidata_development.md
@@ -69,10 +69,10 @@ These are both based on core Delphi images as defined in the
 above. The base images are built first, followed by the derived
 `epidata`-specific images.
 
-- The [`delphi_web_epidata` image](../dev/docker/web/epidata/README.md) adds
+- The [`delphi_web_epidata` image](https://github.com/cmu-delphi/delphi-epidata/blob/main/dev/docker/web/epidata/README.md) adds
   the Epidata API to the `delphi_web` image.
 - The
-  [`delphi_database_epidata` image](../dev/docker/database/epidata/README.md)
+  [`delphi_database_epidata` image](https://github.com/cmu-delphi/delphi-epidata/blob/main/dev/docker/database/epidata/README.md)
   adds the `epi` user account, `epidata` database, and relevant tables
   (initially empty) to the `delphi_database` image.
 
@@ -246,8 +246,8 @@ Here's a full example based on the `fluview` endpoint:
 Writing an integration test is outside of the scope of this document. However,
 a number of existing integration tests exist and can be used as a good starting
 point for additional tests. For example, see the tests for the
-[`fluview` API endpoint](../integrations/server/test_fluview.py) and the
-[`covidcast` ingestion pipeline](../integrations/acquisition/covidcast).
+[`fluview` API endpoint](https://github.com/cmu-delphi/delphi-epidata/blob/main/integrations/server/test_fluview.py) and the
+[`covidcast` ingestion pipeline](https://github.com/cmu-delphi/delphi-epidata/blob/main/integrations/acquisition/covidcast).
 
 To run the existing tests and any new tests that you write, you must
 follow the
@@ -365,15 +365,15 @@ The command above mounts two specific files into the image. It may be tempting
 to bind mount the `src/server` directory rather than specific files, however
 that is currently problematic for a couple of reasons:
 
-1. `server/.htaccess` [from the local repository](../src/server/.htaccess) uses
+1. `server/.htaccess` [from the local repository](https://github.com/cmu-delphi/delphi-epidata/blob/main/src/server/.htaccess) uses
   the `Header` directive. However, the webserver in the container doesn't have
   the corresponding module enabled. This causes the server to deny access to
   the API.
 2. `server/database_config.php`
-  [in the image](../dev/docker/web/epidata/assets/database_config.php) contains
+  [in the image](https://github.com/cmu-delphi/delphi-epidata/blob/main/dev//docker/web/epidata/assets/database_config.php) contains
   database credentials for use in conjunction with the
   `delphi_database_epidata` container during development. However, the same
-  file from [the local repository](../src/server/database_config.php) only
+  file from [the local repository](https://github.com/cmu-delphi/delphi-epidata/blob/main/src/server/database_config.php) only
   contains placeholder values. This prevents communication with the database.
 
 There is currently no benefit to bind-mounting sources into the database
diff --git a/docs/new_endpoint_tutorial.md b/docs/new_endpoint_tutorial.md
index a32530d3f..87a1a3b11 100644
--- a/docs/new_endpoint_tutorial.md
+++ b/docs/new_endpoint_tutorial.md
@@ -55,7 +55,7 @@ is to extract the subset of metadata pertaining to `fluview` and return just tha
 data through a new endpoint.
 
 Each row in the `fluview` table contains
-[a lot of data](../src/ddl/fluview.sql), but we're particularly interested in
+[a lot of data](https://github.com/cmu-delphi/delphi-epidata/blob/main/src/ddl/fluview.sql), but we're particularly interested in
 the following:
 
 - latest publication date
@@ -98,7 +98,7 @@ Here's what we add to each client:
     };
     ```
 
-- [`delphi_epidata.d.ts`](../src/client/delphi_epidata.d.ts)
+- [`delphi_epidata.d.ts`](https://github.com/cmu-delphi/delphi-epidata/blob/main/src/client/delphi_epidata.d.ts)
     ```typescript
     export interface EpidataFunctions {
       // ...
@@ -164,7 +164,7 @@ needs to be an integration test. See more about integration testing in Delphi's
 Create an integration test for the new endpoint by creating a new file,
 `integrations/server/test_fluview_meta.py`. There's a good amount of
 boilerplate, but fortunately, this can be copied _almost_ verbatim from the
-[`fluview` endpoint integration test](../integrations/server/test_fluview.py).
+[`fluview` endpoint integration test](https://github.com/cmu-delphi/delphi-epidata/blob/main/integrations/server/test_fluview.py).
 
 Include the following pieces:
 

From 6fbb60b18f77dc6b42ae1ba65db36825ddcbd30c Mon Sep 17 00:00:00 2001
From: Samuel Gratzl <sam@sgratzl.com>
Date: Wed, 30 Jun 2021 21:31:25 +0200
Subject: [PATCH 3/3] Update docs/epidata_development.md

Co-authored-by: Katie Mazaitis <krivard@cs.cmu.edu>
---
 docs/epidata_development.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/docs/epidata_development.md b/docs/epidata_development.md
index a0cd0acbb..5264d0b7b 100644
--- a/docs/epidata_development.md
+++ b/docs/epidata_development.md
@@ -370,7 +370,7 @@ that is currently problematic for a couple of reasons:
   the corresponding module enabled. This causes the server to deny access to
   the API.
 2. `server/database_config.php`
-  [in the image](https://github.com/cmu-delphi/delphi-epidata/blob/main/dev//docker/web/epidata/assets/database_config.php) contains
+  [in the image](https://github.com/cmu-delphi/delphi-epidata/blob/main/dev/docker/web/epidata/assets/database_config.php) contains
   database credentials for use in conjunction with the
   `delphi_database_epidata` container during development. However, the same
   file from [the local repository](https://github.com/cmu-delphi/delphi-epidata/blob/main/src/server/database_config.php) only