From 0eb42fc53cca7f7e58e56c459f38cb4995cde4c0 Mon Sep 17 00:00:00 2001
From: Tina Townes <ttownes@andrew.cmu.edu>
Date: Fri, 1 Mar 2024 12:46:32 -0500
Subject: [PATCH 01/11] Updating Gemfile to enable Jekyll to work on Windows 11

---
 docs/Gemfile      |   3 +
 docs/Gemfile.lock | 245 +++++++++++++++++++++++-----------------------
 2 files changed, 127 insertions(+), 121 deletions(-)

diff --git a/docs/Gemfile b/docs/Gemfile
index 3af1f7382..c74fb3449 100644
--- a/docs/Gemfile
+++ b/docs/Gemfile
@@ -12,6 +12,7 @@ source "https://rubygems.org"
 
 # This is the default theme for new Jekyll sites. You may change this to anything you like.
 gem "minima", "~> 2.0"
+gem "jekyll-include-cache"
 
 # If you want to use GitHub Pages, remove the "gem "jekyll"" above and
 # uncomment the line below. To upgrade, run `bundle update github-pages`.
@@ -32,3 +33,5 @@ end
 # Performance-booster for watching directories on Windows
 gem "wdm", "~> 0.1.0", :install_if => Gem.win_platform?
 
+
+gem "webrick", "~> 1.8"
diff --git a/docs/Gemfile.lock b/docs/Gemfile.lock
index 8ecc2115b..1fec83d2a 100644
--- a/docs/Gemfile.lock
+++ b/docs/Gemfile.lock
@@ -7,43 +7,42 @@ GEM
       minitest (~> 5.1)
       tzinfo (~> 1.1)
       zeitwerk (~> 2.2, >= 2.2.2)
-    addressable (2.8.0)
-      public_suffix (>= 2.0.2, < 5.0)
+    addressable (2.8.6)
+      public_suffix (>= 2.0.2, < 6.0)
     coffee-script (2.4.1)
       coffee-script-source
       execjs
-    coffee-script-source (1.11.1)
+    coffee-script-source (1.12.2)
     colorator (1.1.0)
-    commonmarker (0.17.13)
-      ruby-enum (~> 0.5)
-    concurrent-ruby (1.2.0)
-    dnsruby (1.61.5)
-      simpleidn (~> 0.1)
-    em-websocket (0.5.2)
+    commonmarker (0.23.10)
+    concurrent-ruby (1.2.3)
+    dnsruby (1.70.0)
+      simpleidn (~> 0.2.1)
+    em-websocket (0.5.3)
       eventmachine (>= 0.12.9)
-      http_parser.rb (~> 0.6.0)
-    ethon (0.12.0)
-      ffi (>= 1.3.0)
+      http_parser.rb (~> 0)
+    ethon (0.16.0)
+      ffi (>= 1.15.0)
     eventmachine (1.2.7)
-    execjs (2.7.0)
-    faraday (1.3.0)
-      faraday-net_http (~> 1.0)
-      multipart-post (>= 1.2, < 3)
-      ruby2_keywords
-    faraday-net_http (1.0.1)
-    ffi (1.15.0)
+    execjs (2.9.1)
+    faraday (2.9.0)
+      faraday-net_http (>= 2.0, < 3.2)
+    faraday-net_http (3.1.0)
+      net-http
+    ffi (1.16.3)
     forwardable-extended (2.6.0)
-    gemoji (3.0.1)
-    github-pages (214)
-      github-pages-health-check (= 1.17.0)
-      jekyll (= 3.9.0)
-      jekyll-avatar (= 0.7.0)
-      jekyll-coffeescript (= 1.1.1)
-      jekyll-commonmark-ghpages (= 0.1.6)
-      jekyll-default-layout (= 0.1.4)
-      jekyll-feed (= 0.15.1)
+    gemoji (4.1.0)
+    github-pages (231)
+      github-pages-health-check (= 1.18.2)
+      jekyll (= 3.9.5)
+      jekyll-avatar (= 0.8.0)
+      jekyll-coffeescript (= 1.2.2)
+      jekyll-commonmark-ghpages (= 0.4.0)
+      jekyll-default-layout (= 0.1.5)
+      jekyll-feed (= 0.17.0)
       jekyll-gist (= 1.5.0)
-      jekyll-github-metadata (= 2.13.0)
+      jekyll-github-metadata (= 2.16.1)
+      jekyll-include-cache (= 0.2.1)
       jekyll-mentions (= 1.6.0)
       jekyll-optional-front-matter (= 0.3.2)
       jekyll-paginate (= 1.1.0)
@@ -52,49 +51,49 @@ GEM
       jekyll-relative-links (= 0.6.1)
       jekyll-remote-theme (= 0.4.3)
       jekyll-sass-converter (= 1.5.2)
-      jekyll-seo-tag (= 2.7.1)
+      jekyll-seo-tag (= 2.8.0)
       jekyll-sitemap (= 1.4.0)
       jekyll-swiss (= 1.0.0)
-      jekyll-theme-architect (= 0.1.1)
-      jekyll-theme-cayman (= 0.1.1)
-      jekyll-theme-dinky (= 0.1.1)
-      jekyll-theme-hacker (= 0.1.2)
-      jekyll-theme-leap-day (= 0.1.1)
-      jekyll-theme-merlot (= 0.1.1)
-      jekyll-theme-midnight (= 0.1.1)
-      jekyll-theme-minimal (= 0.1.1)
-      jekyll-theme-modernist (= 0.1.1)
-      jekyll-theme-primer (= 0.5.4)
-      jekyll-theme-slate (= 0.1.1)
-      jekyll-theme-tactile (= 0.1.1)
-      jekyll-theme-time-machine (= 0.1.1)
+      jekyll-theme-architect (= 0.2.0)
+      jekyll-theme-cayman (= 0.2.0)
+      jekyll-theme-dinky (= 0.2.0)
+      jekyll-theme-hacker (= 0.2.0)
+      jekyll-theme-leap-day (= 0.2.0)
+      jekyll-theme-merlot (= 0.2.0)
+      jekyll-theme-midnight (= 0.2.0)
+      jekyll-theme-minimal (= 0.2.0)
+      jekyll-theme-modernist (= 0.2.0)
+      jekyll-theme-primer (= 0.6.0)
+      jekyll-theme-slate (= 0.2.0)
+      jekyll-theme-tactile (= 0.2.0)
+      jekyll-theme-time-machine (= 0.2.0)
       jekyll-titles-from-headings (= 0.5.3)
-      jemoji (= 0.12.0)
-      kramdown (= 2.3.1)
+      jemoji (= 0.13.0)
+      kramdown (= 2.4.0)
       kramdown-parser-gfm (= 1.1.0)
-      liquid (= 4.0.3)
+      liquid (= 4.0.4)
       mercenary (~> 0.3)
       minima (= 2.5.1)
-      nokogiri (>= 1.10.4, < 2.0)
-      rouge (= 3.26.0)
+      nokogiri (>= 1.13.6, < 2.0)
+      rouge (= 3.30.0)
       terminal-table (~> 1.4)
-    github-pages-health-check (1.17.0)
+    github-pages-health-check (1.18.2)
       addressable (~> 2.3)
       dnsruby (~> 1.60)
-      octokit (~> 4.0)
-      public_suffix (>= 2.0.2, < 5.0)
+      octokit (>= 4, < 8)
+      public_suffix (>= 3.0, < 6.0)
       typhoeus (~> 1.3)
-    html-pipeline (2.14.0)
+    html-pipeline (2.14.3)
       activesupport (>= 2)
       nokogiri (>= 1.4)
-    http_parser.rb (0.6.0)
-    i18n (0.9.5)
+    http_parser.rb (0.8.0)
+    i18n (1.14.1)
       concurrent-ruby (~> 1.0)
-    jekyll (3.9.0)
+    jekyll (3.9.5)
       addressable (~> 2.4)
       colorator (~> 1.0)
       em-websocket (~> 0.5)
-      i18n (~> 0.7)
+      i18n (>= 0.7, < 2)
       jekyll-sass-converter (~> 1.0)
       jekyll-watch (~> 2.0)
       kramdown (>= 1.17, < 3)
@@ -103,27 +102,29 @@ GEM
       pathutil (~> 0.9)
       rouge (>= 1.7, < 4)
       safe_yaml (~> 1.0)
-    jekyll-avatar (0.7.0)
+    jekyll-avatar (0.8.0)
       jekyll (>= 3.0, < 5.0)
-    jekyll-coffeescript (1.1.1)
+    jekyll-coffeescript (1.2.2)
       coffee-script (~> 2.2)
-      coffee-script-source (~> 1.11.1)
-    jekyll-commonmark (1.3.1)
-      commonmarker (~> 0.14)
-      jekyll (>= 3.7, < 5.0)
-    jekyll-commonmark-ghpages (0.1.6)
-      commonmarker (~> 0.17.6)
-      jekyll-commonmark (~> 1.2)
-      rouge (>= 2.0, < 4.0)
-    jekyll-default-layout (0.1.4)
-      jekyll (~> 3.0)
-    jekyll-feed (0.15.1)
+      coffee-script-source (~> 1.12)
+    jekyll-commonmark (1.4.0)
+      commonmarker (~> 0.22)
+    jekyll-commonmark-ghpages (0.4.0)
+      commonmarker (~> 0.23.7)
+      jekyll (~> 3.9.0)
+      jekyll-commonmark (~> 1.4.0)
+      rouge (>= 2.0, < 5.0)
+    jekyll-default-layout (0.1.5)
+      jekyll (>= 3.0, < 5.0)
+    jekyll-feed (0.17.0)
       jekyll (>= 3.7, < 5.0)
     jekyll-gist (1.5.0)
       octokit (~> 4.2)
-    jekyll-github-metadata (2.13.0)
+    jekyll-github-metadata (2.16.1)
       jekyll (>= 3.4, < 5.0)
-      octokit (~> 4.0, != 4.4.0)
+      octokit (>= 4, < 7, != 4.4.0)
+    jekyll-include-cache (0.2.1)
+      jekyll (>= 3.7, < 5.0)
     jekyll-mentions (1.6.0)
       html-pipeline (~> 2.3)
       jekyll (>= 3.7, < 5.0)
@@ -143,65 +144,65 @@ GEM
       rubyzip (>= 1.3.0, < 3.0)
     jekyll-sass-converter (1.5.2)
       sass (~> 3.4)
-    jekyll-seo-tag (2.7.1)
+    jekyll-seo-tag (2.8.0)
       jekyll (>= 3.8, < 5.0)
     jekyll-sitemap (1.4.0)
       jekyll (>= 3.7, < 5.0)
     jekyll-swiss (1.0.0)
-    jekyll-theme-architect (0.1.1)
-      jekyll (~> 3.5)
+    jekyll-theme-architect (0.2.0)
+      jekyll (> 3.5, < 5.0)
       jekyll-seo-tag (~> 2.0)
-    jekyll-theme-cayman (0.1.1)
-      jekyll (~> 3.5)
+    jekyll-theme-cayman (0.2.0)
+      jekyll (> 3.5, < 5.0)
       jekyll-seo-tag (~> 2.0)
-    jekyll-theme-dinky (0.1.1)
-      jekyll (~> 3.5)
+    jekyll-theme-dinky (0.2.0)
+      jekyll (> 3.5, < 5.0)
       jekyll-seo-tag (~> 2.0)
-    jekyll-theme-hacker (0.1.2)
+    jekyll-theme-hacker (0.2.0)
       jekyll (> 3.5, < 5.0)
       jekyll-seo-tag (~> 2.0)
-    jekyll-theme-leap-day (0.1.1)
-      jekyll (~> 3.5)
+    jekyll-theme-leap-day (0.2.0)
+      jekyll (> 3.5, < 5.0)
       jekyll-seo-tag (~> 2.0)
-    jekyll-theme-merlot (0.1.1)
-      jekyll (~> 3.5)
+    jekyll-theme-merlot (0.2.0)
+      jekyll (> 3.5, < 5.0)
       jekyll-seo-tag (~> 2.0)
-    jekyll-theme-midnight (0.1.1)
-      jekyll (~> 3.5)
+    jekyll-theme-midnight (0.2.0)
+      jekyll (> 3.5, < 5.0)
       jekyll-seo-tag (~> 2.0)
-    jekyll-theme-minimal (0.1.1)
-      jekyll (~> 3.5)
+    jekyll-theme-minimal (0.2.0)
+      jekyll (> 3.5, < 5.0)
       jekyll-seo-tag (~> 2.0)
-    jekyll-theme-modernist (0.1.1)
-      jekyll (~> 3.5)
+    jekyll-theme-modernist (0.2.0)
+      jekyll (> 3.5, < 5.0)
       jekyll-seo-tag (~> 2.0)
-    jekyll-theme-primer (0.5.4)
+    jekyll-theme-primer (0.6.0)
       jekyll (> 3.5, < 5.0)
       jekyll-github-metadata (~> 2.9)
       jekyll-seo-tag (~> 2.0)
-    jekyll-theme-slate (0.1.1)
-      jekyll (~> 3.5)
+    jekyll-theme-slate (0.2.0)
+      jekyll (> 3.5, < 5.0)
       jekyll-seo-tag (~> 2.0)
-    jekyll-theme-tactile (0.1.1)
-      jekyll (~> 3.5)
+    jekyll-theme-tactile (0.2.0)
+      jekyll (> 3.5, < 5.0)
       jekyll-seo-tag (~> 2.0)
-    jekyll-theme-time-machine (0.1.1)
-      jekyll (~> 3.5)
+    jekyll-theme-time-machine (0.2.0)
+      jekyll (> 3.5, < 5.0)
       jekyll-seo-tag (~> 2.0)
     jekyll-titles-from-headings (0.5.3)
       jekyll (>= 3.3, < 5.0)
     jekyll-watch (2.2.1)
       listen (~> 3.0)
-    jemoji (0.12.0)
-      gemoji (~> 3.0)
+    jemoji (0.13.0)
+      gemoji (>= 3, < 5)
       html-pipeline (~> 2.2)
       jekyll (>= 3.0, < 5.0)
-    kramdown (2.3.1)
+    kramdown (2.4.0)
       rexml
     kramdown-parser-gfm (1.1.0)
       kramdown (~> 2.0)
-    liquid (4.0.3)
-    listen (3.5.1)
+    liquid (4.0.4)
+    listen (3.9.0)
       rb-fsevent (~> 0.10, >= 0.10.3)
       rb-inotify (~> 0.9, >= 0.9.10)
     mercenary (0.3.6)
@@ -210,53 +211,53 @@ GEM
       jekyll (>= 3.5, < 5.0)
       jekyll-feed (~> 0.9)
       jekyll-seo-tag (~> 2.1)
-    minitest (5.17.0)
-    multipart-post (2.1.1)
+    minitest (5.22.2)
+    net-http (0.4.1)
+      uri
     nokogiri (1.16.2)
       mini_portile2 (~> 2.8.2)
       racc (~> 1.4)
-    octokit (4.20.0)
-      faraday (>= 0.9)
-      sawyer (~> 0.8.0, >= 0.5.3)
+    octokit (4.25.1)
+      faraday (>= 1, < 3)
+      sawyer (~> 0.9)
     pathutil (0.16.2)
       forwardable-extended (~> 2.6)
-    public_suffix (4.0.6)
+    public_suffix (5.0.4)
     racc (1.7.3)
-    rb-fsevent (0.10.4)
+    rb-fsevent (0.11.2)
     rb-inotify (0.10.1)
       ffi (~> 1.0)
-    rexml (3.2.5)
-    rouge (3.26.0)
-    ruby-enum (0.9.0)
-      i18n
-    ruby2_keywords (0.0.4)
-    rubyzip (2.3.0)
+    rexml (3.2.6)
+    rouge (3.30.0)
+    rubyzip (2.3.2)
     safe_yaml (1.0.5)
     sass (3.7.4)
       sass-listen (~> 4.0.0)
     sass-listen (4.0.0)
       rb-fsevent (~> 0.9, >= 0.9.4)
       rb-inotify (~> 0.9, >= 0.9.7)
-    sawyer (0.8.2)
+    sawyer (0.9.2)
       addressable (>= 2.3.5)
-      faraday (> 0.8, < 2.0)
+      faraday (>= 0.17.3, < 3)
     simpleidn (0.2.1)
       unf (~> 0.1.4)
     terminal-table (1.8.0)
       unicode-display_width (~> 1.1, >= 1.1.1)
     thread_safe (0.3.6)
-    typhoeus (1.4.0)
+    typhoeus (1.4.1)
       ethon (>= 0.9.0)
-    tzinfo (1.2.10)
+    tzinfo (1.2.11)
       thread_safe (~> 0.1)
     tzinfo-data (1.2021.1)
       tzinfo (>= 1.0.0)
     unf (0.1.4)
       unf_ext
-    unf_ext (0.0.7.7)
-    unicode-display_width (1.7.0)
+    unf_ext (0.0.9.1)
+    unicode-display_width (1.8.0)
+    uri (0.13.0)
     wdm (0.1.1)
-    zeitwerk (2.6.6)
+    webrick (1.8.1)
+    zeitwerk (2.6.13)
 
 PLATFORMS
   ruby
@@ -264,10 +265,12 @@ PLATFORMS
 DEPENDENCIES
   github-pages
   jekyll-feed (~> 0.6)
+  jekyll-include-cache
   minima (~> 2.0)
   tzinfo (~> 1.2)
   tzinfo-data
   wdm (~> 0.1.0)
+  webrick (~> 1.8)
 
 BUNDLED WITH
    2.2.15

From c62a41ed2b17b89115c4389868b2796468be4055 Mon Sep 17 00:00:00 2001
From: Tina Townes <ttownes@andrew.cmu.edu>
Date: Mon, 11 Mar 2024 20:50:38 -0400
Subject: [PATCH 02/11] Updates to signal dates and added signal to dsew-cpr

Corrected signal dates, added signal and link to Delphi blog.
---
 docs/api/covidcast-signals/dsew-cpr.md | 7 +++++--
 1 file changed, 5 insertions(+), 2 deletions(-)

diff --git a/docs/api/covidcast-signals/dsew-cpr.md b/docs/api/covidcast-signals/dsew-cpr.md
index de970d0d2..0f796ffdf 100644
--- a/docs/api/covidcast-signals/dsew-cpr.md
+++ b/docs/api/covidcast-signals/dsew-cpr.md
@@ -1,6 +1,6 @@
 ---
 title: Data Strategy and Execution Workgroup Community Profile Report
-parent: Data Sources and Signals
+parent: Inactive Signals
 grand_parent: COVIDcast Main Endpoint
 ---
 
@@ -27,9 +27,10 @@ County, MSA, state, and HHS-level values are pulled directly from CPR when avail
 | --- | --- |
 | `confirmed_admissions_covid_1d_7dav` | Number of adult and pediatric confirmed COVID-19 hospital admissions occurring each day. Smoothed using a 7-day average.  <br/> **Earliest date available:** 2019-12-16 for state, HHS, and nation; 2021-01-06 for MSA and county |
 | `confirmed_admissions_covid_1d_prop_7dav` | Number of adult and pediatric confirmed COVID-19 hospital admissions occurring each day, per 100,000 population. Smoothed using a 7-day average. <br/> **Earliest date available:** 2019-12-16 for state, HHS, and nation; 2021-01-06 for MSA and county |
+| `covid_naat_pct_positive_7dav` | "NAAT positivity rate is the number of positive tests divided by the number of tests performed and resulted. See the CDC's [coronavirus resources page](https://web.archive.org/web/20210602062946/https://www.cdc.gov/coronavirus/2019-ncov/lab/resources/calculating-percent-positivity.html) for more information on this method. In rare cases, negative test numbers may be reported on a given day to correct previous numbers, and this sometimes results in a calculated test positivity of greater than 100%. In these cases, test positivity is capped at 100%.” - from the CPR data dictionary. **Earliest date available:** 2020-12-07
 | `people_full_vaccinated` | "People fully vaccinated includes those who have received two doses of the Pfizer-BioNTech or Moderna vaccine and those who have received one dose of the J&J/Janssen vaccine" - from the CPR data dictionary.  <br/> **Earliest date available:** 2021-01-15 at any geo level except MSA and 2021-04-01 at the MSA level.|
 | `people_booster_doses` |"The count of people who received a booster dose includes anyone who is fully vaccinated and has received another dose of COVID-19 vaccine since 2021-08-13. This includes people who received booster doses and people who received additional doses." - from the CPR data dictionary. <br/> **Earliest date available:** 2021-11-01 for state, HHS, and nation. Not available below state level. |
-| `doses_admin_7dav` | "Doses administered shown by date of report, not date of administration. ... [S]ubmitting entities will have the ability to update or delete previously submitted records using new functionality available in CDC’s Data Clearinghouse. Use of this new functionality may result in fluctuations across metrics as historical data are updated or deleted" - from the CPR data dictionary.  Smoothed using a 7-day average. <br/> **Earliest date available:** 2021-04-29 for state, HHS, and nation. Not available below state level. |
+| `doses_admin_7dav` | "Doses administered shown by date of report, not date of administration. ... [S]ubmitting entities will have the ability to update or delete previously submitted records using new functionality available in CDC’s Data Clearinghouse. Use of this new functionality may result in fluctuations across metrics as historical data are updated or deleted" - from the CPR data dictionary.  Smoothed using a 7-day average. <br/> **Earliest date available:** 2021-05-02 for state, HHS, and nation. Not available below state level. |
 | `booster_doses_admin_7dav` | "Doses administered shown by date of report, not date of administration. ... [S]ubmitting entities will have the ability to update or delete previously submitted records using new functionality available in CDC’s Data Clearinghouse. Use of this new functionality may result in fluctuations across metrics as historical data are updated or deleted" - from the CPR data dictionary. "[A] booster dose includes anyone who is fully vaccinated and has received another dose of COVID-19 vaccine since August 13, 2021. This includes people who received booster doses and people who received additional doses." - from the CPR data dictionary. Smoothed using a 7-day average.<br/> **Earliest date available:** 2021-11-01 for state, HHS, and nation. Not available below state level. |
 
 ## Table of contents
@@ -79,6 +80,8 @@ The report is currently updated daily, excluding weekends. However, this is subj
 
 The CPR is prepared with an internal lag of 1-2 days for most signals. The file is usually posted to healthdata.gov the day after the date listed in the filename, excluding weekends and federal holidays. This results in an effective lag in COVIDcast of 2-4 days, or 5 days when Monday is a holiday.
 
+See our [blog post](https://delphi.cmu.edu/blog/2020/11/05/a-syndromic-covid-19-indicator-based-on-insurance-claims-of-outpatient-visits/#backfill) for more information on backfill.
+
 ## Source and Licensing
 
 This indicator mirrors and lightly aggregates data originally published by the Data Strategy and Execution Workgroup via [HealthData.gov](https://healthdata.gov/). As a work of the US government, the original data is in the [public domain](https://www.usa.gov/government-works).

From 63c694f29628f4565c35fef732517a9970c2e341 Mon Sep 17 00:00:00 2001
From: Tina Townes <ttownes@andrew.cmu.edu>
Date: Mon, 11 Mar 2024 21:34:07 -0400
Subject: [PATCH 03/11] Small line break added to dsew-cpr

Small line break added
---
 docs/api/covidcast-signals/dsew-cpr.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/docs/api/covidcast-signals/dsew-cpr.md b/docs/api/covidcast-signals/dsew-cpr.md
index 0f796ffdf..f01270eb5 100644
--- a/docs/api/covidcast-signals/dsew-cpr.md
+++ b/docs/api/covidcast-signals/dsew-cpr.md
@@ -27,7 +27,7 @@ County, MSA, state, and HHS-level values are pulled directly from CPR when avail
 | --- | --- |
 | `confirmed_admissions_covid_1d_7dav` | Number of adult and pediatric confirmed COVID-19 hospital admissions occurring each day. Smoothed using a 7-day average.  <br/> **Earliest date available:** 2019-12-16 for state, HHS, and nation; 2021-01-06 for MSA and county |
 | `confirmed_admissions_covid_1d_prop_7dav` | Number of adult and pediatric confirmed COVID-19 hospital admissions occurring each day, per 100,000 population. Smoothed using a 7-day average. <br/> **Earliest date available:** 2019-12-16 for state, HHS, and nation; 2021-01-06 for MSA and county |
-| `covid_naat_pct_positive_7dav` | "NAAT positivity rate is the number of positive tests divided by the number of tests performed and resulted. See the CDC's [coronavirus resources page](https://web.archive.org/web/20210602062946/https://www.cdc.gov/coronavirus/2019-ncov/lab/resources/calculating-percent-positivity.html) for more information on this method. In rare cases, negative test numbers may be reported on a given day to correct previous numbers, and this sometimes results in a calculated test positivity of greater than 100%. In these cases, test positivity is capped at 100%.” - from the CPR data dictionary. **Earliest date available:** 2020-12-07
+| `covid_naat_pct_positive_7dav` | "NAAT positivity rate is the number of positive tests divided by the number of tests performed and resulted. See the CDC's [coronavirus resources page](https://web.archive.org/web/20210602062946/https://www.cdc.gov/coronavirus/2019-ncov/lab/resources/calculating-percent-positivity.html) for more information on this method. In rare cases, negative test numbers may be reported on a given day to correct previous numbers, and this sometimes results in a calculated test positivity of greater than 100%. In these cases, test positivity is capped at 100%.” - from the CPR data dictionary. <br/> **Earliest date available:** 2020-12-07
 | `people_full_vaccinated` | "People fully vaccinated includes those who have received two doses of the Pfizer-BioNTech or Moderna vaccine and those who have received one dose of the J&J/Janssen vaccine" - from the CPR data dictionary.  <br/> **Earliest date available:** 2021-01-15 at any geo level except MSA and 2021-04-01 at the MSA level.|
 | `people_booster_doses` |"The count of people who received a booster dose includes anyone who is fully vaccinated and has received another dose of COVID-19 vaccine since 2021-08-13. This includes people who received booster doses and people who received additional doses." - from the CPR data dictionary. <br/> **Earliest date available:** 2021-11-01 for state, HHS, and nation. Not available below state level. |
 | `doses_admin_7dav` | "Doses administered shown by date of report, not date of administration. ... [S]ubmitting entities will have the ability to update or delete previously submitted records using new functionality available in CDC’s Data Clearinghouse. Use of this new functionality may result in fluctuations across metrics as historical data are updated or deleted" - from the CPR data dictionary.  Smoothed using a 7-day average. <br/> **Earliest date available:** 2021-05-02 for state, HHS, and nation. Not available below state level. |

From 2318fef9a6c45274fd43e73f19b1fc94cf34cdda Mon Sep 17 00:00:00 2001
From: Tina Townes <tinatownes@users.noreply.github.com>
Date: Wed, 13 Mar 2024 22:01:12 -0400
Subject: [PATCH 04/11] Update docs/api/covidcast-signals/dsew-cpr.md

Explaining what NAAT means

Co-authored-by: nmdefries <42820733+nmdefries@users.noreply.github.com>
---
 docs/api/covidcast-signals/dsew-cpr.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/docs/api/covidcast-signals/dsew-cpr.md b/docs/api/covidcast-signals/dsew-cpr.md
index f01270eb5..fa9589880 100644
--- a/docs/api/covidcast-signals/dsew-cpr.md
+++ b/docs/api/covidcast-signals/dsew-cpr.md
@@ -27,7 +27,7 @@ County, MSA, state, and HHS-level values are pulled directly from CPR when avail
 | --- | --- |
 | `confirmed_admissions_covid_1d_7dav` | Number of adult and pediatric confirmed COVID-19 hospital admissions occurring each day. Smoothed using a 7-day average.  <br/> **Earliest date available:** 2019-12-16 for state, HHS, and nation; 2021-01-06 for MSA and county |
 | `confirmed_admissions_covid_1d_prop_7dav` | Number of adult and pediatric confirmed COVID-19 hospital admissions occurring each day, per 100,000 population. Smoothed using a 7-day average. <br/> **Earliest date available:** 2019-12-16 for state, HHS, and nation; 2021-01-06 for MSA and county |
-| `covid_naat_pct_positive_7dav` | "NAAT positivity rate is the number of positive tests divided by the number of tests performed and resulted. See the CDC's [coronavirus resources page](https://web.archive.org/web/20210602062946/https://www.cdc.gov/coronavirus/2019-ncov/lab/resources/calculating-percent-positivity.html) for more information on this method. In rare cases, negative test numbers may be reported on a given day to correct previous numbers, and this sometimes results in a calculated test positivity of greater than 100%. In these cases, test positivity is capped at 100%.” - from the CPR data dictionary. <br/> **Earliest date available:** 2020-12-07
+| `covid_naat_pct_positive_7dav` | "NAAT positivity rate is the number of positive [SARS-CoV-2 Nucleic Acid Amplification Test (NAAT)] tests divided by the number of [NAAT] tests performed and resulted. See the CDC's [coronavirus resources page](https://web.archive.org/web/20210602062946/https://www.cdc.gov/coronavirus/2019-ncov/lab/resources/calculating-percent-positivity.html) for more information on this method. In rare cases, negative test numbers may be reported on a given day to correct previous numbers, and this sometimes results in a calculated test positivity of greater than 100%. In these cases, test positivity is capped at 100%.” - from the CPR data dictionary. <br/> **Earliest date available:** 2020-12-07
 | `people_full_vaccinated` | "People fully vaccinated includes those who have received two doses of the Pfizer-BioNTech or Moderna vaccine and those who have received one dose of the J&J/Janssen vaccine" - from the CPR data dictionary.  <br/> **Earliest date available:** 2021-01-15 at any geo level except MSA and 2021-04-01 at the MSA level.|
 | `people_booster_doses` |"The count of people who received a booster dose includes anyone who is fully vaccinated and has received another dose of COVID-19 vaccine since 2021-08-13. This includes people who received booster doses and people who received additional doses." - from the CPR data dictionary. <br/> **Earliest date available:** 2021-11-01 for state, HHS, and nation. Not available below state level. |
 | `doses_admin_7dav` | "Doses administered shown by date of report, not date of administration. ... [S]ubmitting entities will have the ability to update or delete previously submitted records using new functionality available in CDC’s Data Clearinghouse. Use of this new functionality may result in fluctuations across metrics as historical data are updated or deleted" - from the CPR data dictionary.  Smoothed using a 7-day average. <br/> **Earliest date available:** 2021-05-02 for state, HHS, and nation. Not available below state level. |

From 83b5ce220d7b2b3b74e7d36c2852234ed7ea0004 Mon Sep 17 00:00:00 2001
From: Tina Townes <ttownes@andrew.cmu.edu>
Date: Wed, 13 Mar 2024 22:02:24 -0400
Subject: [PATCH 05/11] blog post deletion

blog post deletion
---
 docs/api/covidcast-signals/dsew-cpr.md | 2 --
 1 file changed, 2 deletions(-)

diff --git a/docs/api/covidcast-signals/dsew-cpr.md b/docs/api/covidcast-signals/dsew-cpr.md
index f01270eb5..a205e65dc 100644
--- a/docs/api/covidcast-signals/dsew-cpr.md
+++ b/docs/api/covidcast-signals/dsew-cpr.md
@@ -80,8 +80,6 @@ The report is currently updated daily, excluding weekends. However, this is subj
 
 The CPR is prepared with an internal lag of 1-2 days for most signals. The file is usually posted to healthdata.gov the day after the date listed in the filename, excluding weekends and federal holidays. This results in an effective lag in COVIDcast of 2-4 days, or 5 days when Monday is a holiday.
 
-See our [blog post](https://delphi.cmu.edu/blog/2020/11/05/a-syndromic-covid-19-indicator-based-on-insurance-claims-of-outpatient-visits/#backfill) for more information on backfill.
-
 ## Source and Licensing
 
 This indicator mirrors and lightly aggregates data originally published by the Data Strategy and Execution Workgroup via [HealthData.gov](https://healthdata.gov/). As a work of the US government, the original data is in the [public domain](https://www.usa.gov/government-works).

From 4ff6b5dc19d58f879ab53b402e55c89403dee675 Mon Sep 17 00:00:00 2001
From: Tina Townes <ttownes@andrew.cmu.edu>
Date: Wed, 13 Mar 2024 22:15:19 -0400
Subject: [PATCH 06/11] Added blog post link

Added blog post link
---
 docs/api/covidcast-signals/chng.md | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/docs/api/covidcast-signals/chng.md b/docs/api/covidcast-signals/chng.md
index d21a81347..cc9fb89e4 100644
--- a/docs/api/covidcast-signals/chng.md
+++ b/docs/api/covidcast-signals/chng.md
@@ -183,6 +183,8 @@ a median delta of 1% or less), as most major revisions have already occurred.
 
 We are currently working on adjustments to correct for this.
 
+See our [blog post](https://delphi.cmu.edu/blog/2020/11/05/a-syndromic-covid-19-indicator-based-on-insurance-claims-of-outpatient-visits/#backfill) for more information on backfill.
+
 ## Limitations
 
 This data source is based on data provided to us by Change Healthcare. Change

From 9a1599b8fcea0ef2576e118bbd9033ceb72647ae Mon Sep 17 00:00:00 2001
From: Tina Townes <ttownes@andrew.cmu.edu>
Date: Thu, 14 Mar 2024 00:58:34 -0400
Subject: [PATCH 07/11] Updated some signal dates in google-symptoms source

Updated some "Earliest date available" dates in google-symptoms source
---
 docs/api/covidcast-signals/google-symptoms.md | 26 +++++++++----------
 1 file changed, 13 insertions(+), 13 deletions(-)

diff --git a/docs/api/covidcast-signals/google-symptoms.md b/docs/api/covidcast-signals/google-symptoms.md
index 24886c85c..11d53d910 100644
--- a/docs/api/covidcast-signals/google-symptoms.md
+++ b/docs/api/covidcast-signals/google-symptoms.md
@@ -38,19 +38,19 @@ Until January 20, 2022, we had separate signals for symptoms Anosmia, Ageusia, a
 
 | Signal | Description |
 | --- | --- |
-| `s01_raw_search` | The average of Google search volume for related searches of symptom set _s01_, in an arbitrary units that are normalized for overall search users. <br/> **Earliest date available:** 2020-01-01 |
-| `s01_smoothed_search` | The average of Google search volume for related searches of symptom set _s01_, in an arbitrary units that are normalized for overall search users, smoothed by 7-day average. <br/> **Earliest date available:** 2020-01-07 |
-| `s02_raw_search` | The average of Google search volume for related searches of symptom set _s02_, in an arbitrary units that are normalized for overall search users. <br/> **Earliest date available:** 2020-01-01 |
-| `s02_smoothed_search` | The average of Google search volume for related searches of symptom set _s02_, in an arbitrary units that are normalized for overall search users, smoothed by 7-day average. <br/> **Earliest date available:** 2020-01-07 |
-| `s03_raw_search` | The average of Google search volume for related searches of symptom set _s03_, in an arbitrary units that are normalized for overall search users. <br/> **Earliest date available:** 2020-01-01 |
-| `s03_smoothed_search` | The average of Google search volume for related searches of symptom set _s03_, in an arbitrary units that are normalized for overall search users, smoothed by 7-day average. <br/> **Earliest date available:** 2020-01-07 |
-| `s04_raw_search` | The average of Google search volume for related searches of symptom set _s04_, in an arbitrary units that are normalized for overall search users. <br/> **Earliest date available:** 2020-01-01 |
-| `s04_smoothed_search` | The average of Google search volume for related searches of symptom set _s04_, in an arbitrary units that are normalized for overall search users, smoothed by 7-day average. <br/> **Earliest date available:** 2020-01-07 |
-| `s05_raw_search` | The average of Google search volume for related searches of symptom set _s05_, in an arbitrary units that are normalized for overall search users. <br/> **Earliest date available:** 2020-01-01 |
-| `s05_smoothed_search` | The average of Google search volume for related searches of symptom set _s05_, in an arbitrary units that are normalized for overall search users, smoothed by 7-day average. <br/> **Earliest date available:** 2020-01-07 |
-| `s06_raw_search` | The average of Google search volume for related searches of symptom set _s06_, in an arbitrary units that are normalized for overall search users. <br/> **Earliest date available:** 2020-01-01 |
-| `s06_smoothed_search` | The average of Google search volume for related searches of symptom set _s06_, in an arbitrary units that are normalized for overall search users, smoothed by 7-day average. <br/> **Earliest date available:** 2020-01-07 |
-| `scontrol_raw_search` | The average of Google search volume for related searches of symptom set _scontrol_, in an arbitrary units that are normalized for overall search users. <br/> **Earliest date available:** 2020-01-01 |
+| `s01_raw_search` | The average of Google search volume for related searches of symptom set _s01_, in an arbitrary units that are normalized for overall search users. <br/> **Earliest date available:** 2020-02-14 |
+| `s01_smoothed_search` | The average of Google search volume for related searches of symptom set _s01_, in an arbitrary units that are normalized for overall search users, smoothed by 7-day average. <br/> **Earliest date available:** 2020-02-20 |
+| `s02_raw_search` | The average of Google search volume for related searches of symptom set _s02_, in an arbitrary units that are normalized for overall search users. <br/> **Earliest date available:** 2020-02-14 |
+| `s02_smoothed_search` | The average of Google search volume for related searches of symptom set _s02_, in an arbitrary units that are normalized for overall search users, smoothed by 7-day average. <br/> **Earliest date available:** 2020-02-20 |
+| `s03_raw_search` | The average of Google search volume for related searches of symptom set _s03_, in an arbitrary units that are normalized for overall search users. <br/> **Earliest date available:** 2020-02-14 |
+| `s03_smoothed_search` | The average of Google search volume for related searches of symptom set _s03_, in an arbitrary units that are normalized for overall search users, smoothed by 7-day average. <br/> **Earliest date available:** 2020-02-20 |
+| `s04_raw_search` | The average of Google search volume for related searches of symptom set _s04_, in an arbitrary units that are normalized for overall search users. <br/> **Earliest date available:** 2020-02-14 |
+| `s04_smoothed_search` | The average of Google search volume for related searches of symptom set _s04_, in an arbitrary units that are normalized for overall search users, smoothed by 7-day average. <br/> **Earliest date available:** 2020-02-20 |
+| `s05_raw_search` | The average of Google search volume for related searches of symptom set _s05_, in an arbitrary units that are normalized for overall search users. <br/> **Earliest date available:** 2020-02-14 |
+| `s05_smoothed_search` | The average of Google search volume for related searches of symptom set _s05_, in an arbitrary units that are normalized for overall search users, smoothed by 7-day average. <br/> **Earliest date available:** 2020-02-20 |
+| `s06_raw_search` | The average of Google search volume for related searches of symptom set _s06_, in an arbitrary units that are normalized for overall search users. <br/> **Earliest date available:** 2020-02-14 |
+| `s06_smoothed_search` | The average of Google search volume for related searches of symptom set _s06_, in an arbitrary units that are normalized for overall search users, smoothed by 7-day average. <br/> **Earliest date available:** 2020-02-20 |
+| `scontrol_raw_search` | The average of Google search volume for related searches of symptom set _scontrol_, in an arbitrary units that are normalized for overall search users. <br/> **Earliest date available:** 2020-02-14 |
 | `scontrol_smoothed_search` | The average of Google search volume for related searches of symptom set _scontrol_, in an arbitrary units that are normalized for overall search users, smoothed by 7-day average. <br/> **Earliest date available:** 2020-02-20 |
 | `anosmia_raw_search` |  Google search volume for anosmia-related searches, in arbitrary units that are normalized for overall search users. _This signal is no longer updated as of 20 January, 2022._ <br/> **Earliest date available:** 2020-02-13 |
 | `anosmia_smoothed_search` | Google search volume for anosmia-related searches, in arbitrary units that are normalized for overall search users, smoothed by 7-day average. _This signal is no longer updated as of 20 January, 2022._ <br/> **Earliest date available:** 2020-02-20 |

From 3290150bc0af3115e41307e77203a2666e848913 Mon Sep 17 00:00:00 2001
From: Tina Townes <ttownes@andrew.cmu.edu>
Date: Thu, 14 Mar 2024 12:24:43 -0400
Subject: [PATCH 08/11] Added blog post link to hospital-admissions

Added blog post link to hospital-admissions
---
 docs/api/covidcast-signals/hospital-admissions.md | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/docs/api/covidcast-signals/hospital-admissions.md b/docs/api/covidcast-signals/hospital-admissions.md
index 3434bf594..c988b95e8 100644
--- a/docs/api/covidcast-signals/hospital-admissions.md
+++ b/docs/api/covidcast-signals/hospital-admissions.md
@@ -60,6 +60,8 @@ in later data revisions (having a median delta of 10% or more). Estimates for
 dates more than 57 days in the past are expected to remain fairly static (having
 a median delta of 1% or less), as most major revisions have already occurred.
 
+See our [blog post](https://delphi.cmu.edu/blog/2020/11/05/a-syndromic-covid-19-indicator-based-on-insurance-claims-of-outpatient-visits/#backfill) for more information on backfill.
+
 ## Limitations
 
 This data source is based on electronic medical records and claims data provided

From 20974fd880ea1470920c9a6f3f9d6aee62171a3d Mon Sep 17 00:00:00 2001
From: Tina Townes <11445176+tinatownes@users.noreply.github.com>
Date: Thu, 14 Mar 2024 13:19:02 -0400
Subject: [PATCH 09/11] Revert "Updating Gemfile to enable Jekyll to work on
 Windows 11"

This reverts commit 0eb42fc53cca7f7e58e56c459f38cb4995cde4c0.
---
 docs/Gemfile      |   3 -
 docs/Gemfile.lock | 245 +++++++++++++++++++++++-----------------------
 2 files changed, 121 insertions(+), 127 deletions(-)

diff --git a/docs/Gemfile b/docs/Gemfile
index c74fb3449..3af1f7382 100644
--- a/docs/Gemfile
+++ b/docs/Gemfile
@@ -12,7 +12,6 @@ source "https://rubygems.org"
 
 # This is the default theme for new Jekyll sites. You may change this to anything you like.
 gem "minima", "~> 2.0"
-gem "jekyll-include-cache"
 
 # If you want to use GitHub Pages, remove the "gem "jekyll"" above and
 # uncomment the line below. To upgrade, run `bundle update github-pages`.
@@ -33,5 +32,3 @@ end
 # Performance-booster for watching directories on Windows
 gem "wdm", "~> 0.1.0", :install_if => Gem.win_platform?
 
-
-gem "webrick", "~> 1.8"
diff --git a/docs/Gemfile.lock b/docs/Gemfile.lock
index 1fec83d2a..8ecc2115b 100644
--- a/docs/Gemfile.lock
+++ b/docs/Gemfile.lock
@@ -7,42 +7,43 @@ GEM
       minitest (~> 5.1)
       tzinfo (~> 1.1)
       zeitwerk (~> 2.2, >= 2.2.2)
-    addressable (2.8.6)
-      public_suffix (>= 2.0.2, < 6.0)
+    addressable (2.8.0)
+      public_suffix (>= 2.0.2, < 5.0)
     coffee-script (2.4.1)
       coffee-script-source
       execjs
-    coffee-script-source (1.12.2)
+    coffee-script-source (1.11.1)
     colorator (1.1.0)
-    commonmarker (0.23.10)
-    concurrent-ruby (1.2.3)
-    dnsruby (1.70.0)
-      simpleidn (~> 0.2.1)
-    em-websocket (0.5.3)
+    commonmarker (0.17.13)
+      ruby-enum (~> 0.5)
+    concurrent-ruby (1.2.0)
+    dnsruby (1.61.5)
+      simpleidn (~> 0.1)
+    em-websocket (0.5.2)
       eventmachine (>= 0.12.9)
-      http_parser.rb (~> 0)
-    ethon (0.16.0)
-      ffi (>= 1.15.0)
+      http_parser.rb (~> 0.6.0)
+    ethon (0.12.0)
+      ffi (>= 1.3.0)
     eventmachine (1.2.7)
-    execjs (2.9.1)
-    faraday (2.9.0)
-      faraday-net_http (>= 2.0, < 3.2)
-    faraday-net_http (3.1.0)
-      net-http
-    ffi (1.16.3)
+    execjs (2.7.0)
+    faraday (1.3.0)
+      faraday-net_http (~> 1.0)
+      multipart-post (>= 1.2, < 3)
+      ruby2_keywords
+    faraday-net_http (1.0.1)
+    ffi (1.15.0)
     forwardable-extended (2.6.0)
-    gemoji (4.1.0)
-    github-pages (231)
-      github-pages-health-check (= 1.18.2)
-      jekyll (= 3.9.5)
-      jekyll-avatar (= 0.8.0)
-      jekyll-coffeescript (= 1.2.2)
-      jekyll-commonmark-ghpages (= 0.4.0)
-      jekyll-default-layout (= 0.1.5)
-      jekyll-feed (= 0.17.0)
+    gemoji (3.0.1)
+    github-pages (214)
+      github-pages-health-check (= 1.17.0)
+      jekyll (= 3.9.0)
+      jekyll-avatar (= 0.7.0)
+      jekyll-coffeescript (= 1.1.1)
+      jekyll-commonmark-ghpages (= 0.1.6)
+      jekyll-default-layout (= 0.1.4)
+      jekyll-feed (= 0.15.1)
       jekyll-gist (= 1.5.0)
-      jekyll-github-metadata (= 2.16.1)
-      jekyll-include-cache (= 0.2.1)
+      jekyll-github-metadata (= 2.13.0)
       jekyll-mentions (= 1.6.0)
       jekyll-optional-front-matter (= 0.3.2)
       jekyll-paginate (= 1.1.0)
@@ -51,49 +52,49 @@ GEM
       jekyll-relative-links (= 0.6.1)
       jekyll-remote-theme (= 0.4.3)
       jekyll-sass-converter (= 1.5.2)
-      jekyll-seo-tag (= 2.8.0)
+      jekyll-seo-tag (= 2.7.1)
       jekyll-sitemap (= 1.4.0)
       jekyll-swiss (= 1.0.0)
-      jekyll-theme-architect (= 0.2.0)
-      jekyll-theme-cayman (= 0.2.0)
-      jekyll-theme-dinky (= 0.2.0)
-      jekyll-theme-hacker (= 0.2.0)
-      jekyll-theme-leap-day (= 0.2.0)
-      jekyll-theme-merlot (= 0.2.0)
-      jekyll-theme-midnight (= 0.2.0)
-      jekyll-theme-minimal (= 0.2.0)
-      jekyll-theme-modernist (= 0.2.0)
-      jekyll-theme-primer (= 0.6.0)
-      jekyll-theme-slate (= 0.2.0)
-      jekyll-theme-tactile (= 0.2.0)
-      jekyll-theme-time-machine (= 0.2.0)
+      jekyll-theme-architect (= 0.1.1)
+      jekyll-theme-cayman (= 0.1.1)
+      jekyll-theme-dinky (= 0.1.1)
+      jekyll-theme-hacker (= 0.1.2)
+      jekyll-theme-leap-day (= 0.1.1)
+      jekyll-theme-merlot (= 0.1.1)
+      jekyll-theme-midnight (= 0.1.1)
+      jekyll-theme-minimal (= 0.1.1)
+      jekyll-theme-modernist (= 0.1.1)
+      jekyll-theme-primer (= 0.5.4)
+      jekyll-theme-slate (= 0.1.1)
+      jekyll-theme-tactile (= 0.1.1)
+      jekyll-theme-time-machine (= 0.1.1)
       jekyll-titles-from-headings (= 0.5.3)
-      jemoji (= 0.13.0)
-      kramdown (= 2.4.0)
+      jemoji (= 0.12.0)
+      kramdown (= 2.3.1)
       kramdown-parser-gfm (= 1.1.0)
-      liquid (= 4.0.4)
+      liquid (= 4.0.3)
       mercenary (~> 0.3)
       minima (= 2.5.1)
-      nokogiri (>= 1.13.6, < 2.0)
-      rouge (= 3.30.0)
+      nokogiri (>= 1.10.4, < 2.0)
+      rouge (= 3.26.0)
       terminal-table (~> 1.4)
-    github-pages-health-check (1.18.2)
+    github-pages-health-check (1.17.0)
       addressable (~> 2.3)
       dnsruby (~> 1.60)
-      octokit (>= 4, < 8)
-      public_suffix (>= 3.0, < 6.0)
+      octokit (~> 4.0)
+      public_suffix (>= 2.0.2, < 5.0)
       typhoeus (~> 1.3)
-    html-pipeline (2.14.3)
+    html-pipeline (2.14.0)
       activesupport (>= 2)
       nokogiri (>= 1.4)
-    http_parser.rb (0.8.0)
-    i18n (1.14.1)
+    http_parser.rb (0.6.0)
+    i18n (0.9.5)
       concurrent-ruby (~> 1.0)
-    jekyll (3.9.5)
+    jekyll (3.9.0)
       addressable (~> 2.4)
       colorator (~> 1.0)
       em-websocket (~> 0.5)
-      i18n (>= 0.7, < 2)
+      i18n (~> 0.7)
       jekyll-sass-converter (~> 1.0)
       jekyll-watch (~> 2.0)
       kramdown (>= 1.17, < 3)
@@ -102,29 +103,27 @@ GEM
       pathutil (~> 0.9)
       rouge (>= 1.7, < 4)
       safe_yaml (~> 1.0)
-    jekyll-avatar (0.8.0)
+    jekyll-avatar (0.7.0)
       jekyll (>= 3.0, < 5.0)
-    jekyll-coffeescript (1.2.2)
+    jekyll-coffeescript (1.1.1)
       coffee-script (~> 2.2)
-      coffee-script-source (~> 1.12)
-    jekyll-commonmark (1.4.0)
-      commonmarker (~> 0.22)
-    jekyll-commonmark-ghpages (0.4.0)
-      commonmarker (~> 0.23.7)
-      jekyll (~> 3.9.0)
-      jekyll-commonmark (~> 1.4.0)
-      rouge (>= 2.0, < 5.0)
-    jekyll-default-layout (0.1.5)
-      jekyll (>= 3.0, < 5.0)
-    jekyll-feed (0.17.0)
+      coffee-script-source (~> 1.11.1)
+    jekyll-commonmark (1.3.1)
+      commonmarker (~> 0.14)
+      jekyll (>= 3.7, < 5.0)
+    jekyll-commonmark-ghpages (0.1.6)
+      commonmarker (~> 0.17.6)
+      jekyll-commonmark (~> 1.2)
+      rouge (>= 2.0, < 4.0)
+    jekyll-default-layout (0.1.4)
+      jekyll (~> 3.0)
+    jekyll-feed (0.15.1)
       jekyll (>= 3.7, < 5.0)
     jekyll-gist (1.5.0)
       octokit (~> 4.2)
-    jekyll-github-metadata (2.16.1)
+    jekyll-github-metadata (2.13.0)
       jekyll (>= 3.4, < 5.0)
-      octokit (>= 4, < 7, != 4.4.0)
-    jekyll-include-cache (0.2.1)
-      jekyll (>= 3.7, < 5.0)
+      octokit (~> 4.0, != 4.4.0)
     jekyll-mentions (1.6.0)
       html-pipeline (~> 2.3)
       jekyll (>= 3.7, < 5.0)
@@ -144,65 +143,65 @@ GEM
       rubyzip (>= 1.3.0, < 3.0)
     jekyll-sass-converter (1.5.2)
       sass (~> 3.4)
-    jekyll-seo-tag (2.8.0)
+    jekyll-seo-tag (2.7.1)
       jekyll (>= 3.8, < 5.0)
     jekyll-sitemap (1.4.0)
       jekyll (>= 3.7, < 5.0)
     jekyll-swiss (1.0.0)
-    jekyll-theme-architect (0.2.0)
-      jekyll (> 3.5, < 5.0)
+    jekyll-theme-architect (0.1.1)
+      jekyll (~> 3.5)
       jekyll-seo-tag (~> 2.0)
-    jekyll-theme-cayman (0.2.0)
-      jekyll (> 3.5, < 5.0)
+    jekyll-theme-cayman (0.1.1)
+      jekyll (~> 3.5)
       jekyll-seo-tag (~> 2.0)
-    jekyll-theme-dinky (0.2.0)
-      jekyll (> 3.5, < 5.0)
+    jekyll-theme-dinky (0.1.1)
+      jekyll (~> 3.5)
       jekyll-seo-tag (~> 2.0)
-    jekyll-theme-hacker (0.2.0)
+    jekyll-theme-hacker (0.1.2)
       jekyll (> 3.5, < 5.0)
       jekyll-seo-tag (~> 2.0)
-    jekyll-theme-leap-day (0.2.0)
-      jekyll (> 3.5, < 5.0)
+    jekyll-theme-leap-day (0.1.1)
+      jekyll (~> 3.5)
       jekyll-seo-tag (~> 2.0)
-    jekyll-theme-merlot (0.2.0)
-      jekyll (> 3.5, < 5.0)
+    jekyll-theme-merlot (0.1.1)
+      jekyll (~> 3.5)
       jekyll-seo-tag (~> 2.0)
-    jekyll-theme-midnight (0.2.0)
-      jekyll (> 3.5, < 5.0)
+    jekyll-theme-midnight (0.1.1)
+      jekyll (~> 3.5)
       jekyll-seo-tag (~> 2.0)
-    jekyll-theme-minimal (0.2.0)
-      jekyll (> 3.5, < 5.0)
+    jekyll-theme-minimal (0.1.1)
+      jekyll (~> 3.5)
       jekyll-seo-tag (~> 2.0)
-    jekyll-theme-modernist (0.2.0)
-      jekyll (> 3.5, < 5.0)
+    jekyll-theme-modernist (0.1.1)
+      jekyll (~> 3.5)
       jekyll-seo-tag (~> 2.0)
-    jekyll-theme-primer (0.6.0)
+    jekyll-theme-primer (0.5.4)
       jekyll (> 3.5, < 5.0)
       jekyll-github-metadata (~> 2.9)
       jekyll-seo-tag (~> 2.0)
-    jekyll-theme-slate (0.2.0)
-      jekyll (> 3.5, < 5.0)
+    jekyll-theme-slate (0.1.1)
+      jekyll (~> 3.5)
       jekyll-seo-tag (~> 2.0)
-    jekyll-theme-tactile (0.2.0)
-      jekyll (> 3.5, < 5.0)
+    jekyll-theme-tactile (0.1.1)
+      jekyll (~> 3.5)
       jekyll-seo-tag (~> 2.0)
-    jekyll-theme-time-machine (0.2.0)
-      jekyll (> 3.5, < 5.0)
+    jekyll-theme-time-machine (0.1.1)
+      jekyll (~> 3.5)
       jekyll-seo-tag (~> 2.0)
     jekyll-titles-from-headings (0.5.3)
       jekyll (>= 3.3, < 5.0)
     jekyll-watch (2.2.1)
       listen (~> 3.0)
-    jemoji (0.13.0)
-      gemoji (>= 3, < 5)
+    jemoji (0.12.0)
+      gemoji (~> 3.0)
       html-pipeline (~> 2.2)
       jekyll (>= 3.0, < 5.0)
-    kramdown (2.4.0)
+    kramdown (2.3.1)
       rexml
     kramdown-parser-gfm (1.1.0)
       kramdown (~> 2.0)
-    liquid (4.0.4)
-    listen (3.9.0)
+    liquid (4.0.3)
+    listen (3.5.1)
       rb-fsevent (~> 0.10, >= 0.10.3)
       rb-inotify (~> 0.9, >= 0.9.10)
     mercenary (0.3.6)
@@ -211,53 +210,53 @@ GEM
       jekyll (>= 3.5, < 5.0)
       jekyll-feed (~> 0.9)
       jekyll-seo-tag (~> 2.1)
-    minitest (5.22.2)
-    net-http (0.4.1)
-      uri
+    minitest (5.17.0)
+    multipart-post (2.1.1)
     nokogiri (1.16.2)
       mini_portile2 (~> 2.8.2)
       racc (~> 1.4)
-    octokit (4.25.1)
-      faraday (>= 1, < 3)
-      sawyer (~> 0.9)
+    octokit (4.20.0)
+      faraday (>= 0.9)
+      sawyer (~> 0.8.0, >= 0.5.3)
     pathutil (0.16.2)
       forwardable-extended (~> 2.6)
-    public_suffix (5.0.4)
+    public_suffix (4.0.6)
     racc (1.7.3)
-    rb-fsevent (0.11.2)
+    rb-fsevent (0.10.4)
     rb-inotify (0.10.1)
       ffi (~> 1.0)
-    rexml (3.2.6)
-    rouge (3.30.0)
-    rubyzip (2.3.2)
+    rexml (3.2.5)
+    rouge (3.26.0)
+    ruby-enum (0.9.0)
+      i18n
+    ruby2_keywords (0.0.4)
+    rubyzip (2.3.0)
     safe_yaml (1.0.5)
     sass (3.7.4)
       sass-listen (~> 4.0.0)
     sass-listen (4.0.0)
       rb-fsevent (~> 0.9, >= 0.9.4)
       rb-inotify (~> 0.9, >= 0.9.7)
-    sawyer (0.9.2)
+    sawyer (0.8.2)
       addressable (>= 2.3.5)
-      faraday (>= 0.17.3, < 3)
+      faraday (> 0.8, < 2.0)
     simpleidn (0.2.1)
       unf (~> 0.1.4)
     terminal-table (1.8.0)
       unicode-display_width (~> 1.1, >= 1.1.1)
     thread_safe (0.3.6)
-    typhoeus (1.4.1)
+    typhoeus (1.4.0)
       ethon (>= 0.9.0)
-    tzinfo (1.2.11)
+    tzinfo (1.2.10)
       thread_safe (~> 0.1)
     tzinfo-data (1.2021.1)
       tzinfo (>= 1.0.0)
     unf (0.1.4)
       unf_ext
-    unf_ext (0.0.9.1)
-    unicode-display_width (1.8.0)
-    uri (0.13.0)
+    unf_ext (0.0.7.7)
+    unicode-display_width (1.7.0)
     wdm (0.1.1)
-    webrick (1.8.1)
-    zeitwerk (2.6.13)
+    zeitwerk (2.6.6)
 
 PLATFORMS
   ruby
@@ -265,12 +264,10 @@ PLATFORMS
 DEPENDENCIES
   github-pages
   jekyll-feed (~> 0.6)
-  jekyll-include-cache
   minima (~> 2.0)
   tzinfo (~> 1.2)
   tzinfo-data
   wdm (~> 0.1.0)
-  webrick (~> 1.8)
 
 BUNDLED WITH
    2.2.15

From f82b79a123f13f9be3119bac4250209e8295425d Mon Sep 17 00:00:00 2001
From: dsweber2 <david.weber2@pm.me>
Date: Tue, 19 Mar 2024 10:47:26 -0700
Subject: [PATCH 10/11] favicon fix

---
 docs/_config.yml |   2 +-
 docs/favicon.ico | Bin 0 -> 6117 bytes
 2 files changed, 1 insertion(+), 1 deletion(-)
 create mode 100644 docs/favicon.ico

diff --git a/docs/_config.yml b/docs/_config.yml
index 34caf14c9..2d8a45c17 100644
--- a/docs/_config.yml
+++ b/docs/_config.yml
@@ -45,7 +45,7 @@ footer_content: "Copyright &copy; 2020, <a href='https://delphi.cmu.edu'>Delphi
 
 heading_anchors: true
 
-
+favicon_ico: "favicon.ico"
 # Exclude from processing.
 # The following items will not be processed, by default. Create a custom list
 # to override the default setting.
diff --git a/docs/favicon.ico b/docs/favicon.ico
new file mode 100644
index 0000000000000000000000000000000000000000..58e97de20048dc4f4beeaceb6e66c462ac7c68d2
GIT binary patch
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From 44f7d37f449554031f62632a1162182fed5a36ee Mon Sep 17 00:00:00 2001
From: melange396 <melange396@users.noreply.github.com>
Date: Thu, 21 Mar 2024 15:57:35 +0000
Subject: [PATCH 11/11] chore: release delphi-epidata 4.1.20

---
 .bumpversion.cfg                                     | 2 +-
 dev/local/setup.cfg                                  | 2 +-
 src/client/delphi_epidata.R                          | 2 +-
 src/client/delphi_epidata.js                         | 2 +-
 src/client/packaging/npm/package.json                | 2 +-
 src/client/packaging/pypi/delphi_epidata/__init__.py | 2 +-
 src/client/packaging/pypi/setup.py                   | 2 +-
 src/server/_config.py                                | 2 +-
 8 files changed, 8 insertions(+), 8 deletions(-)

diff --git a/.bumpversion.cfg b/.bumpversion.cfg
index d74aac04b..234774926 100644
--- a/.bumpversion.cfg
+++ b/.bumpversion.cfg
@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 4.1.19
+current_version = 4.1.20
 commit = False
 tag = False
 
diff --git a/dev/local/setup.cfg b/dev/local/setup.cfg
index dc2cf469e..7295590c8 100644
--- a/dev/local/setup.cfg
+++ b/dev/local/setup.cfg
@@ -1,6 +1,6 @@
 [metadata]
 name = Delphi Development
-version = 4.1.19
+version = 4.1.20
 
 [options]
 packages =
diff --git a/src/client/delphi_epidata.R b/src/client/delphi_epidata.R
index 7557a0b6b..e4024b204 100644
--- a/src/client/delphi_epidata.R
+++ b/src/client/delphi_epidata.R
@@ -15,7 +15,7 @@ Epidata <- (function() {
   # API base url
   BASE_URL <- getOption('epidata.url', default = 'https://api.delphi.cmu.edu/epidata/')
 
-  client_version <- '4.1.19'
+  client_version <- '4.1.20'
 
   auth <- getOption("epidata.auth", default = NA)
 
diff --git a/src/client/delphi_epidata.js b/src/client/delphi_epidata.js
index c1ea03020..7c684fb78 100644
--- a/src/client/delphi_epidata.js
+++ b/src/client/delphi_epidata.js
@@ -22,7 +22,7 @@
   }
 })(this, function (exports, fetchImpl, jQuery) {
   const BASE_URL = "https://api.delphi.cmu.edu/epidata/";
-  const client_version = "4.1.19";
+  const client_version = "4.1.20";
 
   // Helper function to cast values and/or ranges to strings
   function _listitem(value) {
diff --git a/src/client/packaging/npm/package.json b/src/client/packaging/npm/package.json
index c67d69b89..460042303 100644
--- a/src/client/packaging/npm/package.json
+++ b/src/client/packaging/npm/package.json
@@ -2,7 +2,7 @@
   "name": "delphi_epidata",
   "description": "Delphi Epidata API Client",
   "authors": "Delphi Group",
-  "version": "4.1.19",
+  "version": "4.1.20",
   "license": "MIT",
   "homepage": "https://github.com/cmu-delphi/delphi-epidata",
   "bugs": {
diff --git a/src/client/packaging/pypi/delphi_epidata/__init__.py b/src/client/packaging/pypi/delphi_epidata/__init__.py
index 614660d38..c50efd740 100644
--- a/src/client/packaging/pypi/delphi_epidata/__init__.py
+++ b/src/client/packaging/pypi/delphi_epidata/__init__.py
@@ -1,4 +1,4 @@
 from .delphi_epidata import Epidata
 
 name = "delphi_epidata"
-__version__ = "4.1.19"
+__version__ = "4.1.20"
diff --git a/src/client/packaging/pypi/setup.py b/src/client/packaging/pypi/setup.py
index c28e1dac7..7c0ee051e 100644
--- a/src/client/packaging/pypi/setup.py
+++ b/src/client/packaging/pypi/setup.py
@@ -5,7 +5,7 @@
 
 setuptools.setup(
     name="delphi_epidata",
-    version="4.1.19",
+    version="4.1.20",
     author="David Farrow",
     author_email="dfarrow0@gmail.com",
     description="A programmatic interface to Delphi's Epidata API.",
diff --git a/src/server/_config.py b/src/server/_config.py
index 360af6704..c48de0908 100644
--- a/src/server/_config.py
+++ b/src/server/_config.py
@@ -7,7 +7,7 @@
 
 load_dotenv()
 
-VERSION = "4.1.19"
+VERSION = "4.1.20"
 
 MAX_RESULTS = int(10e6)
 MAX_COMPATIBILITY_RESULTS = int(3650)