Merge pull request #371 from chinandrew/pytest

Make Delphi-Epidata tests Pytest compatible.

Author: krivard

docs/epidata_development.md

@@ -143,6 +143,15 @@ The final line of output should be similar to the following:
 All 48 tests passed! 68% (490/711) coverage.
 ```
 
+You can also run tests using pytest like this:
+```
+docker run --rm delphi_python pytest repos/delphi/delphi-epidata/tests/
+```
+and with pdb enabled like this:
+```
+docker run -it --rm delphi_python pytest repos/delphi/delphi-epidata/tests/ --pdb
+```
+
 ## manual tests
 
 You can test your changes manually by:
@@ -284,6 +293,15 @@ More concretely, you can run Epidata API integration tests like this:
   ✔ All 3 tests passed! [coverage unavailable]
   ```
 
+  You can also run tests using pytest like this:
+  ```
+  docker run --network delphi-net --rm delphi_python pytest repos/delphi/delphi-epidata/integrations/
+  ```
+  and with pdb enabled like this:
+  ```
+  docker run --network delphi-net -it --rm delphi_python pytest repos/delphi/delphi-epidata/integrations/ --pdb
+  ```
+
 5. Bring down the servers, for example with the `docker stop` command.
 
 # rapid iteration

docs/new_endpoint_tutorial.md

@@ -267,6 +267,15 @@ If all succeeds, output should look like this:
 ✔ All 48 tests passed! 69% (486/704) coverage.
 ```
 
+You can also run tests using pytest like this:
+```
+docker run --rm delphi_python pytest repos/delphi/delphi-epidata/tests/
+```
+and with pdb enabled like this:
+```
+docker run -it --rm delphi_python pytest repos/delphi/delphi-epidata/tests/ --pdb
+```
+
 ## integration
 
 Integration tests require more effort and take longer to set up and run.
@@ -317,6 +326,14 @@ delphi.delphi-epidata.integrations.server.test_fluview_meta.FluviewMetaTests.tes
 
 ✔ All 16 tests passed! 48% (180/372) coverage.
 ```
+You can also run tests using pytest like this:
+```
+docker run --network delphi-net --rm delphi_python pytest repos/delphi/delphi-epidata/integrations/
+```
+and with pdb enabled like this:
+```
+docker run --network delphi-net -it --rm delphi_python pytest repos/delphi/delphi-epidata/integrations/ --pdb
+```
 
 # code review and submission
 

integrations/__init__.py

@@ -0,0 +1,4 @@
+import sys
+import os
+
+sys.path.append(os.getcwd())

integrations/acquisition/covid_hosp/facility/__init__.py

@@ -0,0 +1,4 @@
+import sys
+import os
+
+sys.path.append(os.getcwd())

integrations/acquisition/covid_hosp/facility/test_scenarios.py

@@ -8,6 +8,7 @@
 from delphi.epidata.acquisition.covid_hosp.common.database import Database
 from delphi.epidata.acquisition.covid_hosp.common.test_utils import TestUtils
 from delphi.epidata.client.delphi_epidata import Epidata
+from delphi.epidata.acquisition.covid_hosp.facility.update import Update
 import delphi.operations.secrets as secrets
 
 # py3tester coverage target (equivalent to `import *`)

integrations/acquisition/covid_hosp/state_timeseries/__init__.py

@@ -0,0 +1,4 @@
+import sys
+import os
+
+sys.path.append(os.getcwd())

integrations/acquisition/covid_hosp/state_timeseries/test_scenarios.py

@@ -8,6 +8,7 @@
 from delphi.epidata.acquisition.covid_hosp.common.database import Database
 from delphi.epidata.acquisition.covid_hosp.common.test_utils import TestUtils
 from delphi.epidata.client.delphi_epidata import Epidata
+from delphi.epidata.acquisition.covid_hosp.state_timeseries.update import Update
 import delphi.operations.secrets as secrets
 
 # py3tester coverage target (equivalent to `import *`)

integrations/acquisition/covidcast/__init__.py

@@ -0,0 +1,4 @@
+import sys
+import os
+
+sys.path.append(os.getcwd())

integrations/acquisition/covidcast/test_covidcast_meta_caching.py

@@ -12,6 +12,7 @@
 from delphi.epidata.client.delphi_epidata import Epidata
 import delphi.operations.secrets as secrets
 import delphi.epidata.acquisition.covidcast.database as live
+from delphi.epidata.acquisition.covidcast.covidcast_meta_cache_updater import main
 
 # py3tester coverage target (equivalent to `import *`)
 __test_target__ = (

integrations/acquisition/covidcast/test_csv_uploading.py

@@ -11,6 +11,7 @@
 
 # first party
 from delphi.epidata.client.delphi_epidata import Epidata
+from delphi.epidata.acquisition.covidcast.csv_to_database import main
 import delphi.operations.secrets as secrets
 
 # py3tester coverage target (equivalent to `import *`)