[SPARK-28772][BUILD][MLLIB] Update breeze to 1.0

### What changes were proposed in this pull request?

Update breeze dependency to 1.0.

### Why are the changes needed?

Breeze 1.0 supports Scala 2.13 and has a few bug fixes.

### Does this PR introduce any user-facing change?

No.

### How was this patch tested?

Existing tests.

Closes #25874 from srowen/SPARK-28772.

Authored-by: Sean Owen <[email protected]>
Signed-off-by: Dongjoon Hyun <[email protected]>

Author: srowen

LICENSE-binary

@@ -396,6 +396,8 @@ org.codehaus.janino:commons-compiler
 org.codehaus.janino:janino
 jline:jline
 org.jodd:jodd-core
+com.github.wendykierp:JTransforms
+pl.edu.icm:JLargeArrays
 
 
 BSD 3-Clause
@@ -433,8 +435,12 @@ is distributed under the 3-Clause BSD license.
 MIT License
 -----------
 
-org.spire-math:spire-macros_2.12
-org.spire-math:spire_2.12
+org.typelevel:spire_2.12
+org.typelevel:spire-macros_2.12
+org.typelevel:spire-platform_2.12
+org.typelevel:spire-util_2.12
+org.typelevel:algebra_2.12:jar
+org.typelevel:cats-kernel_2.12
 org.typelevel:machinist_2.12
 net.razorvine:pyrolite
 org.slf4j:jcl-over-slf4j
@@ -496,11 +502,6 @@ Eclipse Public License (EPL) 2.0
 jakarta.annotation:jakarta-annotation-api https://projects.eclipse.org/projects/ee4j.ca
 jakarta.ws.rs:jakarta.ws.rs-api https://github.com/eclipse-ee4j/jaxrs-api
 
-Mozilla Public License (MPL) 1.1
---------------------------------
-
-com.github.rwl:jtransforms https://sourceforge.net/projects/jtransforms/
-
 
 Python Software Foundation License
 ----------------------------------

dev/deps/spark-deps-hadoop-2.7

@@ -1,8 +1,11 @@
+JLargeArrays-1.5.jar
+JTransforms-3.1.jar
 JavaEWAH-0.3.2.jar
 RoaringBitmap-0.7.45.jar
 ST4-4.0.4.jar
 activation-1.1.1.jar
 aircompressor-0.10.jar
+algebra_2.12-2.0.0-M2.jar
 antlr-2.7.7.jar
 antlr-runtime-3.4.jar
 antlr4-runtime-4.7.1.jar
@@ -22,8 +25,9 @@ avro-1.8.2.jar
 avro-ipc-1.8.2.jar
 avro-mapred-1.8.2-hadoop2.jar
 bonecp-0.8.0.RELEASE.jar
-breeze-macros_2.12-0.13.2.jar
-breeze_2.12-0.13.2.jar
+breeze-macros_2.12-1.0.jar
+breeze_2.12-1.0.jar
+cats-kernel_2.12-2.0.0-M4.jar
 chill-java-0.9.3.jar
 chill_2.12-0.9.3.jar
 commons-beanutils-1.9.3.jar
@@ -130,7 +134,6 @@ json4s-scalap_2.12-3.6.6.jar
 jsp-api-2.1.jar
 jsr305-3.0.0.jar
 jta-1.1.jar
-jtransforms-2.4.0.jar
 jul-to-slf4j-1.7.16.jar
 kryo-shaded-4.0.2.jar
 kubernetes-client-4.4.2.jar
@@ -142,7 +145,7 @@ libthrift-0.12.0.jar
 log4j-1.2.17.jar
 logging-interceptor-3.12.0.jar
 lz4-java-1.6.0.jar
-machinist_2.12-0.6.1.jar
+machinist_2.12-0.6.8.jar
 macro-compat_2.12-1.1.1.jar
 mesos-1.4.0-shaded-protobuf.jar
 metrics-core-3.1.5.jar
@@ -172,20 +175,23 @@ parquet-jackson-1.10.1.jar
 protobuf-java-2.5.0.jar
 py4j-0.10.8.1.jar
 pyrolite-4.30.jar
+scala-collection-compat_2.12-2.1.1.jar
 scala-compiler-2.12.10.jar
 scala-library-2.12.10.jar
 scala-parser-combinators_2.12-1.1.0.jar
 scala-reflect-2.12.10.jar
 scala-xml_2.12-1.2.0.jar
-shapeless_2.12-2.3.2.jar
+shapeless_2.12-2.3.3.jar
 shims-0.7.45.jar
 slf4j-api-1.7.16.jar
 slf4j-log4j12-1.7.16.jar
 snakeyaml-1.23.jar
 snappy-0.2.jar
 snappy-java-1.1.7.3.jar
-spire-macros_2.12-0.13.0.jar
-spire_2.12-0.13.0.jar
+spire-macros_2.12-0.17.0-M1.jar
+spire-platform_2.12-0.17.0-M1.jar
+spire-util_2.12-0.17.0-M1.jar
+spire_2.12-0.17.0-M1.jar
 stax-api-1.0-2.jar
 stax-api-1.0.1.jar
 stream-2.9.6.jar

dev/deps/spark-deps-hadoop-3.2

@@ -1,9 +1,12 @@
+JLargeArrays-1.5.jar
+JTransforms-3.1.jar
 JavaEWAH-0.3.2.jar
 RoaringBitmap-0.7.45.jar
 ST4-4.0.4.jar
 accessors-smart-1.2.jar
 activation-1.1.1.jar
 aircompressor-0.10.jar
+algebra_2.12-2.0.0-M2.jar
 antlr-2.7.7.jar
 antlr-runtime-3.4.jar
 antlr4-runtime-4.7.1.jar
@@ -20,8 +23,9 @@ avro-1.8.2.jar
 avro-ipc-1.8.2.jar
 avro-mapred-1.8.2-hadoop2.jar
 bonecp-0.8.0.RELEASE.jar
-breeze-macros_2.12-0.13.2.jar
-breeze_2.12-0.13.2.jar
+breeze-macros_2.12-1.0.jar
+breeze_2.12-1.0.jar
+cats-kernel_2.12-2.0.0-M4.jar
 chill-java-0.9.3.jar
 chill_2.12-0.9.3.jar
 commons-beanutils-1.9.3.jar
@@ -132,7 +136,6 @@ json4s-scalap_2.12-3.6.6.jar
 jsp-api-2.1.jar
 jsr305-3.0.0.jar
 jta-1.1.jar
-jtransforms-2.4.0.jar
 jul-to-slf4j-1.7.16.jar
 kerb-admin-1.0.1.jar
 kerb-client-1.0.1.jar
@@ -158,7 +161,7 @@ libthrift-0.12.0.jar
 log4j-1.2.17.jar
 logging-interceptor-3.12.0.jar
 lz4-java-1.6.0.jar
-machinist_2.12-0.6.1.jar
+machinist_2.12-0.6.8.jar
 macro-compat_2.12-1.1.1.jar
 mesos-1.4.0-shaded-protobuf.jar
 metrics-core-3.1.5.jar
@@ -191,20 +194,23 @@ protobuf-java-2.5.0.jar
 py4j-0.10.8.1.jar
 pyrolite-4.30.jar
 re2j-1.1.jar
+scala-collection-compat_2.12-2.1.1.jar
 scala-compiler-2.12.10.jar
 scala-library-2.12.10.jar
 scala-parser-combinators_2.12-1.1.0.jar
 scala-reflect-2.12.10.jar
 scala-xml_2.12-1.2.0.jar
-shapeless_2.12-2.3.2.jar
+shapeless_2.12-2.3.3.jar
 shims-0.7.45.jar
 slf4j-api-1.7.16.jar
 slf4j-log4j12-1.7.16.jar
 snakeyaml-1.23.jar
 snappy-0.2.jar
 snappy-java-1.1.7.3.jar
-spire-macros_2.12-0.13.0.jar
-spire_2.12-0.13.0.jar
+spire-macros_2.12-0.17.0-M1.jar
+spire-platform_2.12-0.17.0-M1.jar
+spire-util_2.12-0.17.0-M1.jar
+spire_2.12-0.17.0-M1.jar
 stax-api-1.0.1.jar
 stax2-api-3.1.4.jar
 stream-2.9.6.jar

licenses-binary/LICENSE-JLargeArrays.txt

@@ -0,0 +1,23 @@
+JLargeArrays
+Copyright (C) 2013 onward University of Warsaw, ICM
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+
+1. Redistributions of source code must retain the above copyright notice, this
+   list of conditions and the following disclaimer. 
+2. Redistributions in binary form must reproduce the above copyright notice,
+   this list of conditions and the following disclaimer in the documentation
+   and/or other materials provided with the distribution.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
+ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
+WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
+ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
+(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
+ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
+SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

licenses-binary/LICENSE-JTransforms.txt

@@ -0,0 +1,23 @@
+JTransforms
+Copyright (c) 2007 onward, Piotr Wendykier
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+
+1. Redistributions of source code must retain the above copyright notice, this
+   list of conditions and the following disclaimer. 
+2. Redistributions in binary form must reproduce the above copyright notice,
+   this list of conditions and the following disclaimer in the documentation
+   and/or other materials provided with the distribution.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
+ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
+WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
+ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
+(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
+ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
+SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.