Replace Turing.Model -> DynamicPPL.Model

Author: penelopeysm

src/mcmc/Inference.jl

@@ -767,13 +767,15 @@ julia> [first(t.θ.x) for t in transitions] # extract samples for `x`
  [-1.704630494695469]
 ```
 """
-function transitions_from_chain(model::Turing.Model, chain::MCMCChains.Chains; kwargs...)
+function transitions_from_chain(
+    model::DynamicPPL.Model, chain::MCMCChains.Chains; kwargs...
+)
     return transitions_from_chain(Random.default_rng(), model, chain; kwargs...)
 end
 
 function transitions_from_chain(
     rng::Random.AbstractRNG,
-    model::Turing.Model,
+    model::DynamicPPL.Model,
     chain::MCMCChains.Chains;
     sampler=DynamicPPL.SampleFromPrior(),
 )

test/mcmc/abstractmcmc.jl

@@ -18,7 +18,7 @@ using Test: @test, @test_throws, @testset
 using Turing
 using Turing.Inference: AdvancedHMC
 
-function initialize_nuts(model::Turing.Model)
+function initialize_nuts(model::DynamicPPL.Model)
     # Create a log-density function with an implementation of the
     # gradient so we ensure that we're using the same AD backend as in Turing.
     f = LogDensityProblemsAD.ADgradient(DynamicPPL.LogDensityFunction(model))