From b73cea10aadc04301e4b51c065a409e57c82ef16 Mon Sep 17 00:00:00 2001 From: Drew Herren Date: Wed, 29 Oct 2025 20:10:01 -0500 Subject: [PATCH 1/2] Updated docs to ensure the site will build --- _pkgdown.yml | 6 ++++++ demo/notebooks/causal_inference.ipynb | 11 +---------- .../causal_inference_feature_subsets.ipynb | 11 +---------- .../heteroskedastic_supervised_learning.ipynb | 11 +---------- .../multivariate_treatment_causal_inference.ipynb | 11 +---------- demo/notebooks/prototype_interface.ipynb | 15 +++------------ demo/notebooks/serialization.ipynb | 11 +---------- demo/notebooks/supervised_learning.ipynb | 11 +---------- .../supervised_learning_classification.ipynb | 11 +---------- 9 files changed, 16 insertions(+), 82 deletions(-) diff --git a/_pkgdown.yml b/_pkgdown.yml index cc84903d..414e24b7 100644 --- a/_pkgdown.yml +++ b/_pkgdown.yml @@ -9,6 +9,9 @@ reference: contents: - bart - predict.bartmodel + - compute_bart_posterior_interval + - compute_contrast_bart_model + - sample_bart_posterior_predictive - title: Causal inference desc: > @@ -16,6 +19,9 @@ reference: contents: - bcf - predict.bcfmodel + - compute_bcf_posterior_interval + - compute_contrast_bcf_model + - sample_bcf_posterior_predictive - title: Low-level functionality diff --git a/demo/notebooks/causal_inference.ipynb b/demo/notebooks/causal_inference.ipynb index afe0cc5e..511ce0c4 100644 --- a/demo/notebooks/causal_inference.ipynb +++ b/demo/notebooks/causal_inference.ipynb @@ -227,16 +227,7 @@ "name": "python3" }, "language_info": { - "codemirror_mode": { - "name": "ipython", - "version": 3 - }, - "file_extension": ".py", - "mimetype": "text/x-python", - "name": "python", - "nbconvert_exporter": "python", - "pygments_lexer": "ipython3", - "version": "3.12.9" + "name": "python" } }, "nbformat": 4, diff --git a/demo/notebooks/causal_inference_feature_subsets.ipynb b/demo/notebooks/causal_inference_feature_subsets.ipynb index 0cebe960..2bbfbad5 100644 --- a/demo/notebooks/causal_inference_feature_subsets.ipynb +++ b/demo/notebooks/causal_inference_feature_subsets.ipynb @@ -360,16 +360,7 @@ "name": "python3" }, "language_info": { - "codemirror_mode": { - "name": "ipython", - "version": 3 - }, - "file_extension": ".py", - "mimetype": "text/x-python", - "name": "python", - "nbconvert_exporter": "python", - "pygments_lexer": "ipython3", - "version": "3.12.9" + "name": "python" } }, "nbformat": 4, diff --git a/demo/notebooks/heteroskedastic_supervised_learning.ipynb b/demo/notebooks/heteroskedastic_supervised_learning.ipynb index 26ec87e2..915caf6e 100644 --- a/demo/notebooks/heteroskedastic_supervised_learning.ipynb +++ b/demo/notebooks/heteroskedastic_supervised_learning.ipynb @@ -241,16 +241,7 @@ "name": "python3" }, "language_info": { - "codemirror_mode": { - "name": "ipython", - "version": 3 - }, - "file_extension": ".py", - "mimetype": "text/x-python", - "name": "python", - "nbconvert_exporter": "python", - "pygments_lexer": "ipython3", - "version": "3.12.9" + "name": "python" } }, "nbformat": 4, diff --git a/demo/notebooks/multivariate_treatment_causal_inference.ipynb b/demo/notebooks/multivariate_treatment_causal_inference.ipynb index 37cd71d4..3e345aa4 100644 --- a/demo/notebooks/multivariate_treatment_causal_inference.ipynb +++ b/demo/notebooks/multivariate_treatment_causal_inference.ipynb @@ -265,16 +265,7 @@ "name": "python3" }, "language_info": { - "codemirror_mode": { - "name": "ipython", - "version": 3 - }, - "file_extension": ".py", - "mimetype": "text/x-python", - "name": "python", - "nbconvert_exporter": "python", - "pygments_lexer": "ipython3", - "version": "3.10.14" + "name": "python" } }, "nbformat": 4, diff --git a/demo/notebooks/prototype_interface.ipynb b/demo/notebooks/prototype_interface.ipynb index 1810241a..ab5a7967 100644 --- a/demo/notebooks/prototype_interface.ipynb +++ b/demo/notebooks/prototype_interface.ipynb @@ -341,8 +341,8 @@ "outputs": [], "source": [ "# Forest predictions\n", - "bart_preds = forest_container.predict(dataset)\n", - "forest_preds = bart_preds['y_hat'] * y_std + y_bar\n", + "forest_preds = forest_container.predict(dataset)\n", + "forest_preds = forest_preds * y_std + y_bar\n", "forest_preds_gfr = forest_preds[:, :num_warmstart]\n", "forest_preds_mcmc = forest_preds[:, num_warmstart:num_samples]\n", "\n", @@ -1107,16 +1107,7 @@ "name": "python3" }, "language_info": { - "codemirror_mode": { - "name": "ipython", - "version": 3 - }, - "file_extension": ".py", - "mimetype": "text/x-python", - "name": "python", - "nbconvert_exporter": "python", - "pygments_lexer": "ipython3", - "version": "3.12.9" + "name": "python" } }, "nbformat": 4, diff --git a/demo/notebooks/serialization.ipynb b/demo/notebooks/serialization.ipynb index e9b0f4c1..176a51c1 100644 --- a/demo/notebooks/serialization.ipynb +++ b/demo/notebooks/serialization.ipynb @@ -388,16 +388,7 @@ "name": "python3" }, "language_info": { - "codemirror_mode": { - "name": "ipython", - "version": 3 - }, - "file_extension": ".py", - "mimetype": "text/x-python", - "name": "python", - "nbconvert_exporter": "python", - "pygments_lexer": "ipython3", - "version": "3.12.9" + "name": "python" } }, "nbformat": 4, diff --git a/demo/notebooks/supervised_learning.ipynb b/demo/notebooks/supervised_learning.ipynb index cffdce2e..289952ca 100644 --- a/demo/notebooks/supervised_learning.ipynb +++ b/demo/notebooks/supervised_learning.ipynb @@ -376,16 +376,7 @@ "name": "python3" }, "language_info": { - "codemirror_mode": { - "name": "ipython", - "version": 3 - }, - "file_extension": ".py", - "mimetype": "text/x-python", - "name": "python", - "nbconvert_exporter": "python", - "pygments_lexer": "ipython3", - "version": "3.10.16" + "name": "python" } }, "nbformat": 4, diff --git a/demo/notebooks/supervised_learning_classification.ipynb b/demo/notebooks/supervised_learning_classification.ipynb index 40feb510..0d488e71 100644 --- a/demo/notebooks/supervised_learning_classification.ipynb +++ b/demo/notebooks/supervised_learning_classification.ipynb @@ -202,16 +202,7 @@ "name": "python3" }, "language_info": { - "codemirror_mode": { - "name": "ipython", - "version": 3 - }, - "file_extension": ".py", - "mimetype": "text/x-python", - "name": "python", - "nbconvert_exporter": "python", - "pygments_lexer": "ipython3", - "version": "3.12.9" + "name": "python" } }, "nbformat": 4, From 1aa6dcda664cac2050c73c6178601db279b4c4b7 Mon Sep 17 00:00:00 2001 From: Drew Herren Date: Wed, 29 Oct 2025 20:10:28 -0500 Subject: [PATCH 2/2] Updated tree inspection notebook --- demo/notebooks/tree_inspection.ipynb | 11 +---------- 1 file changed, 1 insertion(+), 10 deletions(-) diff --git a/demo/notebooks/tree_inspection.ipynb b/demo/notebooks/tree_inspection.ipynb index a7ad8fe2..fbba0be9 100644 --- a/demo/notebooks/tree_inspection.ipynb +++ b/demo/notebooks/tree_inspection.ipynb @@ -363,16 +363,7 @@ "name": "python3" }, "language_info": { - "codemirror_mode": { - "name": "ipython", - "version": 3 - }, - "file_extension": ".py", - "mimetype": "text/x-python", - "name": "python", - "nbconvert_exporter": "python", - "pygments_lexer": "ipython3", - "version": "3.12.9" + "name": "python" } }, "nbformat": 4,