Harmonizome

components/Download/edge_only.tsx

@@ -19,8 +19,8 @@ const EdgeOnly = ({download}: {download: Array<{
 			<Grid item xs={12}>
 				<Typography variant={"body1"}>
 					Each dataset below contains a link to `[source].new_archive.zip` file. 
-					This zip file contains 1. a '[source].nodes.csv' file containing the terms' information; 2. edges files containing
-					the triple source, relation, and target signifying an edge in the network, and 3. a '[genes].nodes.csv' file containing the genes that are covered in the dataset.
+					This zip file contains 1. a `[source].nodes.csv` file containing the terms` information; 2. edges files containing
+					the triple source, relation, and target signifying an edge in the network, and 3. a `[genes].nodes.csv` file containing the genes that are covered in the dataset.
 					Additionally these files may also include associated metadata for the source and target nodes as well as the edges.
 				</Typography>
 			</Grid>

components/misc/index.tsx

@@ -194,7 +194,7 @@ const HarmonizomeFooter = () => {
             <li>
               <Link href="http://icahn.mssm.edu/research/labs/maayan-laboratory" target="_blank" rel="noopener noreferrer" passHref>
                 <Typography component="span" style={{ fontSize: '14px', textDecoration: 'none', color: 'inherit', fontFamily: roboto.style.fontFamily, fontWeight: '300' }}>
-                  Ma'ayan Laboratory of Computational Systems Biology
+                  Ma`ayan Laboratory of Computational Systems Biology
                 </Typography>
               </Link>
             </li>
@@ -221,7 +221,7 @@ const HarmonizomeFooter = () => {
             <Typography variant="body2" component="p" sx={{ fontSize: '14px', fontFamily: roboto.style.fontFamily, fontWeight: '300' }}>
               <Link href="http://database.oxfordjournals.org/content/2016/baw100.short" target="_blank" rel="noopener noreferrer" passHref>
                 <span style={{ textDecoration: 'none', color: 'inherit', fontFamily: roboto.style.fontFamily }}>
-                  Rouillard AD, Gundersen GW, Fernandez NF, Wang Z, Monteiro CD, McDermott MG, Ma'ayan A. 
+                  Rouillard AD, Gundersen GW, Fernandez NF, Wang Z, Monteiro CD, McDermott MG, Ma`ayan A. 
                   <em>The harmonizome: a collection of processed datasets gathered to serve and mine knowledge 
                   about genes and proteins</em>. Database (Oxford). 2016 Jul 3;2016. pii: baw100.
                 </span>

docker-compose.yml

@@ -5,7 +5,7 @@ services:
       context: .
       dockerfile: ./Dockerfile.next
     platform: linux/amd64
-    image: nlingam05/harmonizome-kg:2.4.1
+    image: nlingam05/harmonizome-kg:2.4.12
     x-kubernetes:
       strategy:
         type: Recreate

package.json

@@ -1,6 +1,6 @@
 {
   "name": "cfde-knowledge-exchange",
-  "version": "2.4.1",
+  "version": "2.4.12",
   "private": true,
   "scripts": {
     "dev": "NODE_ENV=development next dev",

public/schema.json

@@ -9467,8 +9467,6 @@
                 "type": "page",
                 "component": "KnowledgeGraph",
                 "props": {
-                    "title": "Term & Gene Search: Find connections between genes and terms from the datasets of Harmonizome.",
-                    "description": "Search one or two genes or terms to see related entities.",
                     "init_function": "initialize_kg",
                     "initial_query": {
                         "start": "gene",

themes/harmonizome-kg.ts

@@ -154,7 +154,7 @@ export const harmonizome_kg_theme = createTheme({
                   height: 50,
                   background: "#132457",
                   boxShadow: "0 2px 5px 0 rgba(0, 0, 0, 0.26)",
-				  marginBottom: 10,
+				  marginBottom: 35,
                 },
               },
         },