update coverage config

.github/workflows/ci_test-base.yml

@@ -68,7 +68,7 @@ jobs:
     - name: Test Package [only]
       run: |
         # NOTE: run coverage on tests does not propagare faler status for Win, https://github.com/nedbat/coveragepy/issues/1003
-        python -m pytest pytorch_lightning -v --cov=pytorch_lightning --junitxml=junit/test-results-${{ runner.os }}-${{ matrix.python-version }}-${{ matrix.requires }}.xml
+        coverage run --source pytorch_lightning -m pytest pytorch_lightning -v --junitxml=junit/test-results-${{ runner.os }}-${{ matrix.python-version }}-${{ matrix.requires }}.xml
 
     - name: Upload pytest test results
       uses: actions/upload-artifact@v2

.github/workflows/ci_test-conda.yml

@@ -44,7 +44,7 @@ jobs:
     - name: Tests
       run: |
         # NOTE: run coverage on tests does not propagare faler status for Win, https://github.com/nedbat/coveragepy/issues/1003
-        python -m pytest pytorch_lightning tests --cov=pytorch_lightning -v --durations=50 --junitxml=junit/test-results-${{ runner.os }}-torch${{ matrix.pytorch-version }}.xml
+        coverage run --source pytorch_lightning -m pytest pytorch_lightning tests -v --durations=50 --junitxml=junit/test-results-${{ runner.os }}-torch${{ matrix.pytorch-version }}.xml
       shell: bash -l {0}
 
     - name: Upload pytest results

.github/workflows/ci_test-full.yml

@@ -134,7 +134,7 @@ jobs:
     - name: Tests
       run: |
         # NOTE: do not include coverage report here, see: https://github.com/nedbat/coveragepy/issues/1003
-        python -m pytest pytorch_lightning tests --cov=pytorch_lightning -v --durations=50 --junitxml=junit/test-results-${{ runner.os }}-py${{ matrix.python-version }}-${{ matrix.requires }}.xml
+        coverage run --source pytorch_lightning -m pytest pytorch_lightning tests -v --durations=50 --junitxml=junit/test-results-${{ runner.os }}-py${{ matrix.python-version }}-${{ matrix.requires }}.xml
 
     - name: Examples
       run: |

azure-pipelines.yml

@@ -78,7 +78,7 @@ jobs:
       displayName: 'Get legacy checkpoints'
 
     - bash: |
-        python -m pytest pytorch_lightning tests -v --cov=pytorch_lightning --junitxml=$(Build.StagingDirectory)/test-results.xml --durations=50
+        python -m coverage run --source pytorch_lightning -m pytest pytorch_lightning tests -v --junitxml=$(Build.StagingDirectory)/test-results.xml --durations=50
       displayName: 'Testing: standard'
 
     - bash: |

requirements/test.txt

@@ -1,8 +1,8 @@
 coverage>5.2.0
 codecov>=2.1
 pytest>=6.0
-pytest-cov>2.10
-# pytest-xdist
+#pytest-cov>2.10
+#pytest-xdist
 flake8>=3.6
 check-manifest
 twine==3.2

setup.cfg

@@ -47,11 +47,6 @@ omit =
     pytorch_lightning/utilities/xla_device_utils.py
     pytorch_lightning/utilities/distributed.py
     pytorch_lightning/tuner/auto_gpu_select.py
-    # TODO: temporary, until accelerator refactor is finished
-    pytorch_lightning/accelerators/accelerator.py
-    pytorch_lightning/plugins/training_type/*.py
-    pytorch_lightning/plugins/precision/*.py
-    pytorch_lightning/plugins/base_plugin.py
 
 
 [flake8]

tests/special_tests.sh

@@ -14,7 +14,7 @@
 # Running special tests
 set -e
 export PL_RUNNING_SPECIAL_TESTS=1
-DEFAULTS="-m coverage run --source pytorch_lightning -a -m pytest --verbose --capture=no"
+DEFAULTS="-m coverage run --source pytorch_lightning --append -m pytest --verbose --capture=no"
 python ${DEFAULTS} tests/trainer/optimization/test_manual_optimization.py::test_step_with_optimizer_closure_with_different_frequencies_ddp
 python ${DEFAULTS} tests/models/test_sync_batchnorm.py::test_sync_batchnorm_ddp
 python ${DEFAULTS} tests/plugins/test_deepspeed_plugin.py::test_invalid_deepspeed_defaults_no_precision