Merge branch 'master' into hooks/outputs

Author: kaushikb11

CHANGELOG.md

@@ -43,6 +43,9 @@ The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/).
 - Changed `trainer.evaluating` to return `True` if validating or testing ([#4945](https://github.com/PyTorchLightning/pytorch-lightning/pull/4945))
 
 
+- Changed `setup()` and `teardown()` stage argument to take any of `{fit,validate,test,predict}` ([#6386](https://github.com/PyTorchLightning/pytorch-lightning/pull/6386))
+
+
 ### Deprecated
 
 
@@ -118,6 +121,12 @@ The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/).
 - Fixed DP reduction with collection ([#6324](https://github.com/PyTorchLightning/pytorch-lightning/pull/6324))
 
 
+- Fixed `.teardown(stage='fit')` getting called during `trainer.test` ([#6386](https://github.com/PyTorchLightning/pytorch-lightning/pull/6386))
+
+
+- Fixed `.on_fit_{start,end}()` getting called during `trainer.test` ([#6386](https://github.com/PyTorchLightning/pytorch-lightning/pull/6386))
+
+
 - Fixed PyTorch Profiler with `emit_nvtx` ([#6260](https://github.com/PyTorchLightning/pytorch-lightning/pull/6260))
 
 

docs/source/conf.py

@@ -371,6 +371,7 @@ def package_list_from_file(file):
 doctest_global_setup = """
 import importlib
 import os
+from typing import Optional
 import torch
 from torch import nn
 import pytorch_lightning as pl

docs/source/extensions/datamodules.rst

@@ -80,7 +80,7 @@ The equivalent DataModule just organizes the same exact code, but makes it reusa
             self.data_dir = data_dir
             self.batch_size = batch_size
 
-        def setup(self, stage=None):
+        def setup(self, stage: Optional[str] = None):
             self.mnist_test = MNIST(self.data_dir, train=False)
             mnist_full = MNIST(self.data_dir, train=True)
             self.mnist_train, self.mnist_val = random_split(mnist_full, [55000, 5000])
@@ -138,7 +138,7 @@ Here's a more realistic, complex DataModule that shows how much more reusable th
             MNIST(self.data_dir, train=True, download=True)
             MNIST(self.data_dir, train=False, download=True)
 
-        def setup(self, stage=None):
+        def setup(self, stage: Optional[str] = None):
 
             # Assign train/val datasets for use in dataloaders
             if stage == 'fit' or stage is None:
@@ -382,12 +382,12 @@ still ensures the method runs on the correct devices)
 
     dm = MNISTDataModule()
     dm.prepare_data()
-    dm.setup('fit')
+    dm.setup(stage='fit')
 
     model = Model(num_classes=dm.num_classes, width=dm.width, vocab=dm.vocab)
     trainer.fit(model, dm)
 
-    dm.setup('test')
+    dm.setup(stage='test')
     trainer.test(datamodule=dm)
 
 ----------------
@@ -403,7 +403,7 @@ You can of course use DataModules in plain PyTorch code as well.
     dm.prepare_data()
 
     # splits/transforms
-    dm.setup('fit')
+    dm.setup(stage='fit')
 
     # use data
     for batch in dm.train_dataloader():
@@ -412,7 +412,7 @@ You can of course use DataModules in plain PyTorch code as well.
         ...
 
     # lazy load test data
-    dm.setup('test')
+    dm.setup(stage='test')
     for batch in dm.test_dataloader():
         ...
 

docs/source/starter/introduction_guide.rst

@@ -240,7 +240,7 @@ In this case, it's better to group the full definition of a dataset into a `Data
             tokenize()
             build_vocab()
 
-        def setup(self):
+        def setup(self, stage: Optional[str] = None):
             # called on every GPU
             vocab = load_vocab()
             self.vocab_size = len(vocab)
@@ -310,8 +310,8 @@ An alternative to using a DataModule is to defer initialization of the models mo
             download_data()
             tokenize()
 
-        def setup(self, step):
-            # step is either 'fit' or 'test' 90% of the time not relevant
+        def setup(self, stage: Optional[str] = None):
+            # step is either 'fit', 'validate', 'test', or 'predict'. 90% of the time not relevant
             data = load_data()
             num_classes = data.classes
             self.l1 = nn.Linear(..., num_classes)
@@ -598,7 +598,7 @@ In this method we do all the preparation we need to do once (instead of on every
             MNIST(os.getcwd(), train=True, download=True, transform=transforms.ToTensor())
             MNIST(os.getcwd(), train=False, download=True, transform=transforms.ToTensor())
 
-        def setup(self, stage):
+        def setup(self, stage: Optional[str] = None):
             # transform
             transform=transforms.Compose([transforms.ToTensor()])
             mnist_train = MNIST(os.getcwd(), train=True, download=False, transform=transform)

docs/source/starter/new-project.rst

@@ -651,7 +651,7 @@ Make your data code reusable by organizing it into a :class:`~pytorch_lightning.
             MNIST(os.getcwd(), train=False, download=True)
 
         # OPTIONAL, called for every GPU/machine (assigning state is OK)
-        def setup(self, stage):
+        def setup(self, stage: Optional[str] = None):
             # transforms
             transform=transforms.Compose([
                 transforms.ToTensor(),

pytorch_lightning/callbacks/base.py

@@ -17,7 +17,7 @@
 """
 
 import abc
-from typing import Any, Dict, List
+from typing import Any, Dict, List, Optional
 
 from pytorch_lightning.core.lightning import LightningModule
 
@@ -33,12 +33,12 @@ def on_before_accelerator_backend_setup(self, trainer, pl_module: LightningModul
         """Called before accelerator is being setup"""
         pass
 
-    def setup(self, trainer, pl_module: LightningModule, stage: str) -> None:
-        """Called when fit or test begins"""
+    def setup(self, trainer, pl_module: LightningModule, stage: Optional[str] = None) -> None:
+        """Called when fit, validate, test, predict, or tune begins"""
         pass
 
-    def teardown(self, trainer, pl_module: LightningModule, stage: str) -> None:
-        """Called when fit or test ends"""
+    def teardown(self, trainer, pl_module: LightningModule, stage: Optional[str] = None) -> None:
+        """Called when fit, validate, test, predict, or tune ends"""
         pass
 
     def on_init_start(self, trainer) -> None:

pytorch_lightning/core/datamodule.py

@@ -55,10 +55,10 @@ def __call__(cls, *args, **kwargs):
 def track_data_hook_calls(fn):
     """A decorator that checks if prepare_data/setup have been called.
 
-    - When dm.prepare_data() is called, dm.has_prepared_data gets set to True
-    - When dm.setup('fit') is called, dm.has_setup_fit gets set to True
-    - When dm.setup('test') is called, dm.has_setup_test gets set to True
-    - When dm.setup() is called without stage arg, both dm.has_setup_fit and dm.has_setup_test get set to True
+    - When ``dm.prepare_data()`` is called, ``dm.has_prepared_data`` gets set to True
+    - When ``dm.setup()``, ``dm.has_setup_{fit,validate,test}`` get set to True
+    - When ``dm.setup(stage)`` is called, where stage is any of ``{fit,validate,test,predict}``.
+        Its corresponding `dm_has_setup_{stage}` attribute gets set to True
 
     Args:
         fn (function): Function that will be tracked to see if it has been called.
@@ -77,15 +77,15 @@ def wrapped_fn(*args, **kwargs):
         if fn.__name__ == "setup":
 
             # Get stage either by grabbing from args or checking kwargs.
-            # If not provided, set call status of 'fit' and 'test' to True.
+            # If not provided, set call status of 'fit', 'validate', and 'test' to True.
             # We do this so __attach_datamodule in trainer.py doesn't mistakenly call setup('test') on trainer.test()
             stage = args[1] if len(args) > 1 else kwargs.get("stage", None)
 
-            if stage == "fit" or stage is None:
-                obj._has_setup_fit = True
-
-            if stage == "test" or stage is None:
-                obj._has_setup_test = True
+            if stage is None:
+                for s in ("fit", "validate", "test"):
+                    setattr(obj, f"_has_setup_{s}", True)
+            else:
+                setattr(obj, f"_has_setup_{stage}", True)
 
         if fn.__name__ == "prepare_data":
             obj._has_prepared_data = True
@@ -156,7 +156,9 @@ def __init__(
         # Private attrs to keep track of whether or not data hooks have been called yet
         self._has_prepared_data = False
         self._has_setup_fit = False
+        self._has_setup_validate = False
         self._has_setup_test = False
+        self._has_setup_predict = False
 
     @property
     def train_transforms(self):
@@ -214,32 +216,50 @@ def size(self, dim=None) -> Union[Tuple, int]:
         return self.dims
 
     @property
-    def has_prepared_data(self):
-        """Return bool letting you know if datamodule.prepare_data() has been called or not.
+    def has_prepared_data(self) -> bool:
+        """Return bool letting you know if ``datamodule.prepare_data()`` has been called or not.
 
         Returns:
-            bool: True if datamodule.prepare_data() has been called. False by default.
+            bool: True if ``datamodule.prepare_data()`` has been called. False by default.
         """
         return self._has_prepared_data
 
     @property
-    def has_setup_fit(self):
-        """Return bool letting you know if datamodule.setup('fit') has been called or not.
+    def has_setup_fit(self) -> bool:
+        """Return bool letting you know if ``datamodule.setup(stage='fit')`` has been called or not.
 
         Returns:
-            bool: True if datamodule.setup('fit') has been called. False by default.
+            bool: True ``if datamodule.setup(stage='fit')`` has been called. False by default.
         """
         return self._has_setup_fit
 
     @property
-    def has_setup_test(self):
-        """Return bool letting you know if datamodule.setup('test') has been called or not.
+    def has_setup_validate(self) -> bool:
+        """Return bool letting you know if ``datamodule.setup(stage='validate')`` has been called or not.
+
+        Returns:
+            bool: True if ``datamodule.setup(stage='validate')`` has been called. False by default.
+        """
+        return self._has_setup_validate
+
+    @property
+    def has_setup_test(self) -> bool:
+        """Return bool letting you know if ``datamodule.setup(stage='test')`` has been called or not.
 
         Returns:
-            bool: True if datamodule.setup('test') has been called. False by default.
+            bool: True if ``datamodule.setup(stage='test')`` has been called. False by default.
         """
         return self._has_setup_test
 
+    @property
+    def has_setup_predict(self) -> bool:
+        """Return bool letting you know if ``datamodule.setup(stage='predict')`` has been called or not.
+
+        Returns:
+            bool: True if ``datamodule.setup(stage='predict')`` has been called. False by default.
+        """
+        return self._has_setup_predict
+
     @abstractmethod
     def prepare_data(self, *args, **kwargs):
         pass

pytorch_lightning/core/hooks.py

@@ -25,14 +25,14 @@
 class ModelHooks:
     """Hooks to be used in LightningModule."""
 
-    def setup(self, stage: str) -> None:
+    def setup(self, stage: Optional[str] = None) -> None:
         """
-        Called at the beginning of fit and test.
+        Called at the beginning of fit (train + validate), validate, test, predict, or tune.
         This is a good hook when you need to build models dynamically or adjust something about them.
         This hook is called on every process when using DDP.
 
         Args:
-            stage: either 'fit' or 'test'
+            stage: either ``'fit'``, ``'validate'``, ``'test'``, or ``'predict'``
 
         Example::
 
@@ -53,12 +53,12 @@ def setup(stage):
 
         """
 
-    def teardown(self, stage: str) -> None:
+    def teardown(self, stage: Optional[str] = None) -> None:
         """
-        Called at the end of fit and test.
+        Called at the end of fit (train + validate), validate, test, predict, or tune.
 
         Args:
-            stage: either 'fit' or 'test'
+            stage: either ``'fit'``, ``'validate'``, ``'test'``, or ``'predict'``
         """
 
     def on_fit_start(self) -> None:

pytorch_lightning/plugins/training_type/dp.py

@@ -49,9 +49,9 @@ def reduce(self, tensor, *args, **kwargs):
 
         else:
 
-            def _reduce(tensor: torch.Tensor):
-                dtype_tensor = tensor.dtype
-                return tensor.float().mean().type(dtype_tensor)
+            def _reduce(t: torch.Tensor):
+                dtype_tensor = t.dtype
+                return t.float().mean().type(dtype_tensor)
 
             tensor = apply_to_collection(tensor, torch.Tensor, _reduce)
 

pytorch_lightning/trainer/callback_hook.py

@@ -15,7 +15,7 @@
 from abc import ABC
 from copy import deepcopy
 from inspect import signature
-from typing import Any, Callable, Dict, List, Type
+from typing import Any, Callable, Dict, List, Type, Optional
 
 from pytorch_lightning.callbacks import Callback
 from pytorch_lightning.core.lightning import LightningModule
@@ -34,18 +34,18 @@ class TrainerCallbackHookMixin(ABC):
     callbacks: List[Callback] = []
     lightning_module: LightningModule
 
-    def on_before_accelerator_backend_setup(self, model):
-        """Called in the beginning of fit and test"""
+    def on_before_accelerator_backend_setup(self, model: LightningModule) -> None:
+        """Called at the beginning of fit (train + validate), validate, test, or predict, or tune."""
         for callback in self.callbacks:
             callback.on_before_accelerator_backend_setup(self, model)
 
-    def setup(self, model, stage: str):
-        """Called in the beginning of fit and test"""
+    def setup(self, model: LightningModule, stage: Optional[str]) -> None:
+        """Called at the beginning of fit (train + validate), validate, test, or predict, or tune."""
         for callback in self.callbacks:
             callback.setup(self, model, stage)
 
-    def teardown(self, stage: str):
-        """Called at the end of fit and test"""
+    def teardown(self, stage: Optional[str] = None) -> None:
+        """Called at the end of fit (train + validate), validate, test, or predict, or tune."""
         for callback in self.callbacks:
             callback.teardown(self, self.lightning_module, stage)
 
@@ -157,15 +157,15 @@ def on_train_end(self):
         for callback in self.callbacks:
             callback.on_train_end(self, self.lightning_module)
 
-    def on_pretrain_routine_start(self, model):
-        """Called when the train begins."""
+    def on_pretrain_routine_start(self) -> None:
+        """Called when the pre-train routine begins."""
         for callback in self.callbacks:
-            callback.on_pretrain_routine_start(self, model)
+            callback.on_pretrain_routine_start(self, self.lightning_module)
 
-    def on_pretrain_routine_end(self, model):
-        """Called when the train ends."""
+    def on_pretrain_routine_end(self) -> None:
+        """Called when the pre-train routine ends."""
         for callback in self.callbacks:
-            callback.on_pretrain_routine_end(self, model)
+            callback.on_pretrain_routine_end(self, self.lightning_module)
 
     def on_batch_start(self):
         """Called when the training batch begins."""