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Retire deprecated graph-visualization package
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README.md

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@@ -28,6 +28,7 @@ Contained within this repository is a comprehensive and automated code graph ana
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### :newspaper: News
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- November 2025: Removed deprecated (since version 2.x) "graph-visualization" node package
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- November 2025: Treemap charts for anomalies and archetypes
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- October 2025: Graph visualizations for anomaly archetypes
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- October 2025: Anomaly archetypes with markdown summary
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- To use venv, no additional installation is needed. For that the environment variable `USE_VIRTUAL_PYTHON_ENVIRONMENT_VENV` needs to be set to `'true'`.
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- Chromium will automatically be downloaded if needed for Jupyter Notebook PDF reports generation.
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### Additional Prerequisites for Graph Visualization
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These tools are needed to run the graph visualization scripts of directory [scripts/visualization/](./scripts/visualization/) and the deprecated scripts in [graph-visualization](./graph-visualization):
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- [Node.js](https://nodejs.org/en)
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- [npm](https://docs.npmjs.com/about-npm)
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### Additional Prerequisites for Windows
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- Add this line to your `~/.bashrc` file if you are using Anaconda3: `/c/ProgramData/Anaconda3/etc/profile.d/conda.sh`. Try to find a similar script for other conda package managers or versions.
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- [scikit-learn](https://scikit-learn.org)
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- [optuna](https://optuna.org)
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- [SHAP](https://github.com/shap/shap)
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- [Graph Visualization](./graph-visualization/README.md) uses [node.js](https://nodejs.org/de) and the dependencies listed in [package.json](./graph-visualization/package.json).
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- [HPCC-Systems (High Performance Computing Cluster) Web-Assembly (JavaScript)](https://github.com/hpcc-systems/hpcc-js-wasm) containing a wrapper for GraphViz to visualize graph structures.
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- [GraphViz](https://gitlab.com/graphviz/graphviz) for CLI Graph Visualization
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- [Check links in markdown documentation (GitHub workflow)](./.github/workflows/internal-check-links-in-documentation.yml) uses [markdown-link-check](https://github.com/tcort/markdown-link-check).

graph-visualization/.nvmrc

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graph-visualization/DEPRECATED.md

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graph-visualization/README.md

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graph-visualization/index.css

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graph-visualization/java-artifact-dependencies/graphVisualizationJavaArtifactDependencies.html

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graph-visualization/java-artifact-dependencies/graphVisualizationJavaArtifactDependencies.js

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