From 145706e751ea7a73202676894cd58be65bea97d1 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bob=20Dr=C3=B6ge?= Date: Fri, 5 Apr 2024 11:53:36 +0200 Subject: [PATCH 1/6] add R-bundle-Bioconductor-3.18-foss-2023a-R-4.3.2.eb --- .../software.eessi.io/2023.06/eessi-2023.06-eb-4.9.0-2023a.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.0-2023a.yml b/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.0-2023a.yml index ad3cfddfb6..2dadc5ab28 100644 --- a/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.0-2023a.yml +++ b/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.0-2023a.yml @@ -57,3 +57,4 @@ easyconfigs: - Highway-1.0.4-GCCcore-12.3.0.eb - ELPA-2023.05.001-foss-2023a.eb - libxc-6.2.2-GCC-12.3.0.eb + - R-bundle-Bioconductor-3.18-foss-2023a-R-4.3.2.eb From cef7a277ac4092f8ff1256290ad6bb8b244c2443 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bob=20Dr=C3=B6ge?= Date: Fri, 5 Apr 2024 13:03:35 +0200 Subject: [PATCH 2/6] add from-pr to bioconductor --- .../2023.06/eessi-2023.06-eb-4.9.0-2023a.yml | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.0-2023a.yml b/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.0-2023a.yml index facd4230ab..60b9600589 100644 --- a/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.0-2023a.yml +++ b/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.0-2023a.yml @@ -67,4 +67,6 @@ easyconfigs: - MODFLOW-6.4.4-foss-2023a.eb: options: from-pr: 20142 - - R-bundle-Bioconductor-3.18-foss-2023a-R-4.3.2.eb + - R-bundle-Bioconductor-3.18-foss-2023a-R-4.3.2.eb: + options: + from-pr: 19949 From 3745adee2c09aa73d44c7b693baca3ac4c96e70c Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bob=20Dr=C3=B6ge?= Date: Mon, 8 Apr 2024 13:52:36 +0200 Subject: [PATCH 3/6] use pr 20316 for Bioconductor --- .../software.eessi.io/2023.06/eessi-2023.06-eb-4.9.0-2023a.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.0-2023a.yml b/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.0-2023a.yml index d3ac5f1c5b..bfc408e045 100644 --- a/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.0-2023a.yml +++ b/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.0-2023a.yml @@ -73,4 +73,4 @@ easyconfigs: from-pr: 20238 - R-bundle-Bioconductor-3.18-foss-2023a-R-4.3.2.eb: options: - from-pr: 19949 + from-pr: 20316 From b6a222639341313caca5bebb621590f8d0862373 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bob=20Dr=C3=B6ge?= Date: Fri, 19 Apr 2024 10:30:08 +0200 Subject: [PATCH 4/6] move biocondutor to 4.9.1 stack, use pr 20379 --- .../software.eessi.io/2023.06/eessi-2023.06-eb-4.9.0-2023a.yml | 3 --- .../software.eessi.io/2023.06/eessi-2023.06-eb-4.9.1-2023a.yml | 3 +++ 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.0-2023a.yml b/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.0-2023a.yml index bfc408e045..44952e2765 100644 --- a/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.0-2023a.yml +++ b/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.0-2023a.yml @@ -71,6 +71,3 @@ easyconfigs: options: # see https://github.com/easybuilders/easybuild-easyconfigs/pull/20238 from-pr: 20238 - - R-bundle-Bioconductor-3.18-foss-2023a-R-4.3.2.eb: - options: - from-pr: 20316 diff --git a/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.1-2023a.yml b/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.1-2023a.yml index 3b51db3b11..57cfc00297 100644 --- a/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.1-2023a.yml +++ b/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.1-2023a.yml @@ -1,2 +1,5 @@ easyconfigs: - ncdu-1.18-GCC-12.3.0.eb + - R-bundle-Bioconductor-3.18-foss-2023a-R-4.3.2.eb: + options: + from-pr: 20379 From d6336e181efb320a74b895e0baf73373e49875f9 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bob=20Dr=C3=B6ge?= Date: Fri, 19 Apr 2024 11:50:15 +0200 Subject: [PATCH 5/6] move bioconductor back to 4.9.0 file --- .../software.eessi.io/2023.06/eessi-2023.06-eb-4.9.0-2023a.yml | 3 +++ .../software.eessi.io/2023.06/eessi-2023.06-eb-4.9.1-2023a.yml | 3 --- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.0-2023a.yml b/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.0-2023a.yml index 44952e2765..23d64036f1 100644 --- a/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.0-2023a.yml +++ b/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.0-2023a.yml @@ -71,3 +71,6 @@ easyconfigs: options: # see https://github.com/easybuilders/easybuild-easyconfigs/pull/20238 from-pr: 20238 + - R-bundle-Bioconductor-3.18-foss-2023a-R-4.3.2.eb: + options: + from-pr: 20379 diff --git a/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.1-2023a.yml b/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.1-2023a.yml index 57cfc00297..3b51db3b11 100644 --- a/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.1-2023a.yml +++ b/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.1-2023a.yml @@ -1,5 +1,2 @@ easyconfigs: - ncdu-1.18-GCC-12.3.0.eb - - R-bundle-Bioconductor-3.18-foss-2023a-R-4.3.2.eb: - options: - from-pr: 20379 From ac82cc840bfbdae0638438fb85f9a5004e020f2a Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bob=20Dr=C3=B6ge?= Date: Tue, 30 Apr 2024 21:21:32 +0200 Subject: [PATCH 6/6] move bioconductor to eb 4.9.1 file --- .../software.eessi.io/2023.06/eessi-2023.06-eb-4.9.0-2023a.yml | 3 --- .../software.eessi.io/2023.06/eessi-2023.06-eb-4.9.1-2023a.yml | 3 +++ 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.0-2023a.yml b/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.0-2023a.yml index 23d64036f1..44952e2765 100644 --- a/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.0-2023a.yml +++ b/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.0-2023a.yml @@ -71,6 +71,3 @@ easyconfigs: options: # see https://github.com/easybuilders/easybuild-easyconfigs/pull/20238 from-pr: 20238 - - R-bundle-Bioconductor-3.18-foss-2023a-R-4.3.2.eb: - options: - from-pr: 20379 diff --git a/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.1-2023a.yml b/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.1-2023a.yml index ec5fd3c638..e65747e4a5 100644 --- a/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.1-2023a.yml +++ b/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.1-2023a.yml @@ -1,3 +1,6 @@ easyconfigs: - ncdu-1.18-GCC-12.3.0.eb - SAMtools-1.18-GCC-12.3.0.eb + - R-bundle-Bioconductor-3.18-foss-2023a-R-4.3.2.eb: + options: + from-pr: 20379