From 65bcea1bbbc51211590035713709ed75b946069c Mon Sep 17 00:00:00 2001
From: torri <torri@disroot.org>
Date: Wed, 13 Aug 2025 14:44:26 +0200
Subject: [PATCH 1/4] apps originally built with EB 4.9.2

---
 .../2023.06/a64fx/eessi-2023.06-eb-4.9.2-2023b.yml | 14 ++++++++++++++
 1 file changed, 14 insertions(+)

diff --git a/easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-4.9.2-2023b.yml b/easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-4.9.2-2023b.yml
index c7411ada0a..866ec333a1 100644
--- a/easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-4.9.2-2023b.yml
+++ b/easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-4.9.2-2023b.yml
@@ -4,3 +4,17 @@ easyconfigs:
         # see https://github.com/easybuilders/easybuild-easyconfigs/pull/20820
         from-commit: 1fc885b35dacdeb2feef4af207a2daa2502bae08
   - foss-2023b.eb
+  - IPython-8.17.2-GCCcore-13.2.0.eb
+  - dlb-3.4-gompi-2023b.eb
+  - pystencils-1.3.4-gfbf-2023b.eb:
+  - Extrae-4.2.0-gompi-2023b.eb:
+  - Boost.MPI-1.83.0-gompi-2023b.eb:
+     options:
+       # source URLs for Boost.* have changed, corresponding PR is
+       # https://github.com/easybuilders/easybuild-easyconfigs/pull/22240
+       # Boost.MPI is a dependency of pyMBE
+       from-commit: e610fe1ac5393d1de668a466fdaaea74c580ee03
+  - pyMBE-0.8.0-foss-2023b.eb:
+  - STAR-2.7.11b-GCC-13.2.0.eb:
+  - HPL-2.3-foss-2023b.eb
+  - R-bundle-CRAN-2024.06-foss-2023b.eb:

From eb043dccaad5395dae5a45e7e6df909b8c6ff903 Mon Sep 17 00:00:00 2001
From: Helena Vela Beltran <47674829+hvelab@users.noreply.github.com>
Date: Fri, 22 Aug 2025 11:54:43 +0200
Subject: [PATCH 2/4] Update eessi-2023.06-eb-4.9.2-2023b.yml

---
 .../a64fx/eessi-2023.06-eb-4.9.2-2023b.yml     | 18 ++++++++++++++++++
 1 file changed, 18 insertions(+)

diff --git a/easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-4.9.2-2023b.yml b/easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-4.9.2-2023b.yml
index 866ec333a1..70e0fb493a 100644
--- a/easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-4.9.2-2023b.yml
+++ b/easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-4.9.2-2023b.yml
@@ -7,7 +7,15 @@ easyconfigs:
   - IPython-8.17.2-GCCcore-13.2.0.eb
   - dlb-3.4-gompi-2023b.eb
   - pystencils-1.3.4-gfbf-2023b.eb:
+      options:
+        # see https://github.com/easybuilders/easybuild-easyconfigs/pull/20889
+        from-commit: c66c4788a17f7e4f55aa23f9fdb782aad97c9ce7
   - Extrae-4.2.0-gompi-2023b.eb:
+      options:
+        # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21017
+        from-commit: 120f4d56efebd2bc61382db4c84a664a339c66cf
+        # see https://github.com/easybuilders/easybuild-easyblocks/pull/3393
+        include-easyblocks-from-commit: c4951c78d62fa5cf8e9f6fe0ead212d2a4d7cb9c
   - Boost.MPI-1.83.0-gompi-2023b.eb:
      options:
        # source URLs for Boost.* have changed, corresponding PR is
@@ -15,6 +23,16 @@ easyconfigs:
        # Boost.MPI is a dependency of pyMBE
        from-commit: e610fe1ac5393d1de668a466fdaaea74c580ee03
   - pyMBE-0.8.0-foss-2023b.eb:
+      options:
+        # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21034
+        from-commit: 76e7fc6657bab64bfbec826540a3a8f0040258f2
   - STAR-2.7.11b-GCC-13.2.0.eb:
+      options:
+        # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21200
+        from-commit: 765ba900daf5953e306c4dad896febe52fdd6c00
   - HPL-2.3-foss-2023b.eb
   - R-bundle-CRAN-2024.06-foss-2023b.eb:
+      options:
+        # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21366
+        # we use a commit from the Brunsli PR here to get rid of the Highway dependency
+        from-commit: 1736a123b1685836452587a5c51793257570bb2d

From 1837764787ce5d15240c0b33a8f3debfadd5d3c8 Mon Sep 17 00:00:00 2001
From: Helena Vela Beltran <47674829+hvelab@users.noreply.github.com>
Date: Wed, 3 Sep 2025 14:39:43 +0200
Subject: [PATCH 3/4] Update eessi-2023.06-eb-4.9.2-2023b.yml

---
 .../2023.06/a64fx/eessi-2023.06-eb-4.9.2-2023b.yml            | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-4.9.2-2023b.yml b/easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-4.9.2-2023b.yml
index 70e0fb493a..7585524df0 100644
--- a/easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-4.9.2-2023b.yml
+++ b/easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-4.9.2-2023b.yml
@@ -34,5 +34,5 @@ easyconfigs:
   - R-bundle-CRAN-2024.06-foss-2023b.eb:
       options:
         # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21366
-        # we use a commit from the Brunsli PR here to get rid of the Highway dependency
-        from-commit: 1736a123b1685836452587a5c51793257570bb2d
+        # use the latest update of the bundle
+        from-commit: 743dcc4e3440f29200b90a3cd1aaee2580aaf19f

From 55a6a7045ce32d86016c4f88bdb0d3242f6dc49f Mon Sep 17 00:00:00 2001
From: Helena Vela Beltran <47674829+hvelab@users.noreply.github.com>
Date: Wed, 17 Sep 2025 11:11:47 +0200
Subject: [PATCH 4/4] Update eessi-2023.06-eb-4.9.2-2023b.yml

---
 .../2023.06/a64fx/eessi-2023.06-eb-4.9.2-2023b.yml            | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-4.9.2-2023b.yml b/easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-4.9.2-2023b.yml
index 7585524df0..9c3ebe2d6f 100644
--- a/easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-4.9.2-2023b.yml
+++ b/easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-4.9.2-2023b.yml
@@ -34,5 +34,5 @@ easyconfigs:
   - R-bundle-CRAN-2024.06-foss-2023b.eb:
       options:
         # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21366
-        # use the latest update of the bundle
-        from-commit: 743dcc4e3440f29200b90a3cd1aaee2580aaf19f
+        # use an older commit to not run into dependency issues
+        from-commit: 1736a123b1685836452587a5c51793257570bb2d