From 8ffd3c3ab5e57884bdbf65642c49776769fa18e1 Mon Sep 17 00:00:00 2001 From: Thomas Roeblitz Date: Tue, 27 May 2025 09:49:09 +0200 Subject: [PATCH 1/4] {2023.06}[2023a,a64fx] apps originally built with EB 4.9.2 --- .../a64fx/eessi-2023.06-eb-4.9.4-2023a.yml | 116 ++++++++++++++++++ 1 file changed, 116 insertions(+) diff --git a/easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-4.9.4-2023a.yml b/easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-4.9.4-2023a.yml index 66b261ac9b..96563ecec9 100644 --- a/easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-4.9.4-2023a.yml +++ b/easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-4.9.4-2023a.yml @@ -297,3 +297,119 @@ easyconfigs: - BLAST+-2.14.1-gompi-2023a.eb - Valgrind-3.21.0-gompi-2023a.eb - OrthoFinder-2.5.5-foss-2023a.eb +# from here on apps were originally built with EB 4.9.2 +# PR 20958 is included since EB 4.9.3 +# - OpenFOAM-10-foss-2023a.eb: +# options: +# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/20958 +# from-commit: dbadb2074464d816740ee0e95595c2cb31b6338f + - OpenFOAM-10-foss-2023a.eb +# PR 20958 is included since EB 4.9.3 +# - OpenFOAM-11-foss-2023a.eb: +# options: +# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/20958 +# from-commit: dbadb2074464d816740ee0e95595c2cb31b6338f + - OpenFOAM-11-foss-2023a.eb + - BCFtools-1.18-GCC-12.3.0.eb + - BWA-0.7.18-GCCcore-12.3.0.eb + - CapnProto-1.0.1-GCCcore-12.3.0.eb + - DendroPy-4.6.1-GCCcore-12.3.0.eb + - DIAMOND-2.1.8-GCC-12.3.0.eb + - FastME-2.1.6.3-GCC-12.3.0.eb + - fastp-0.23.4-GCC-12.3.0.eb + - HMMER-3.4-gompi-2023a.eb +# PR 20955 is included since EB 4.9.3 +# - IQ-TREE-2.3.5-gompi-2023a.eb: +# options: +# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/20955 +# from-commit: 185f88b9a03d65a7fb74edc7acb4221e87e90784 + - IQ-TREE-2.3.5-gompi-2023a.eb + - KronaTools-2.8.1-GCCcore-12.3.0.eb + - LSD2-2.4.1-GCCcore-12.3.0.eb + - MAFFT-7.520-GCC-12.3.0-with-extensions.eb + - ncbi-vdb-3.0.10-gompi-2023a.eb + - MetalWalls-21.06.1-foss-2023a.eb +# PRs 20138 and 3338 were included since EB 4.9.3 +# - QuantumESPRESSO-7.3.1-foss-2023a.eb: +# options: +# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/20138 +# from-commit: dbdaacc0739fdee91baa9123864ea4428cf21273 +# # see https://github.com/easybuilders/easybuild-easyblocks/pull/3338 +# include-easyblocks-from-commit: 32e45bd1f2d916732ca5852d55d17fa4d99e388b + - QuantumESPRESSO-7.3.1-foss-2023a.eb +# PR 20951 is included since EB 4.9.3 +# - CP2K-2023.1-foss-2023a.eb: +# options: +# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/20951 +# from-commit: a92667fe32396bbd4106243658625f7ff2adcd68 + - CP2K-2023.1-foss-2023a.eb + - amdahl-0.3.1-gompi-2023a.eb + - LLVM-14.0.6-GCCcore-12.3.0-llvmlite.eb + - numba-0.58.1-foss-2023a.eb +# PR 21434 is included since EB 4.9.4 +# - librosa-0.10.1-foss-2023a.eb: +# options: +# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21434 +# from-commit: 4b6170603150c9c93602b0deb726869d19a390f0 + - librosa-0.10.1-foss-2023a.eb + - xarray-2023.9.0-gfbf-2023a.eb + - SciTools-Iris-3.9.0-foss-2023a.eb +# PRs 20841 and 3338 were included since EB 4.9.3 +# - OpenFOAM-v2312-foss-2023a.eb: +# options: +# # https://github.com/easybuilders/easybuild-easyblocks/pull/3388 +# include-easyblocks-from-commit: c8256a36e7062bc09f5ce30552a9de9827054c9e +# # https://github.com/easybuilders/easybuild-easyconfigs/pull/20841 +# from-commit: f0e91e6e430ebf902f7788ebb47f0203dee60649 + - OpenFOAM-v2312-foss-2023a.eb +# PR 21136 is included since EB 4.9.3 +# - BioPerl-1.7.8-GCCcore-12.3.0.eb: +# options: +# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21136 +# from-commit: d8076ebaf8cb915762adebf88d385cc672b350dc + - BioPerl-1.7.8-GCCcore-12.3.0.eb + - grpcio-1.57.0-GCCcore-12.3.0.eb +# PR 20880 is included since EB 4.9.3 +# - orjson-3.9.15-GCCcore-12.3.0.eb: +# options: +# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/20880 +# from-commit: bc6e08f89759b8b70166de5bfcb5056b9db8ec90 + - orjson-3.9.15-GCCcore-12.3.0.eb +# PR 21094 is included since EB 4.9.3 +# - wradlib-2.0.3-foss-2023a.eb: +# options: +# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21094 +# from-commit: 3a2e0b8e6ee45277d01fb7e2eb93027a28c9461a + - wradlib-2.0.3-foss-2023a.eb +# PR 21155 is included since EB 4.9.3 +# - MBX-1.1.0-foss-2023a.eb: +# options: +# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21155 +# from-commit: 6929a67401f2a2ec58f91fb306332a77497d73ff + - MBX-1.1.0-foss-2023a.eb +# PRs 20964 and 3381 are included since EB 4.9.3 +# - Transrate-1.0.3-GCC-12.3.0.eb: +# options: +# # https://github.com/easybuilders/easybuild-easyblocks/pull/3381 +# include-easyblocks-from-commit: bb86f05d4917b29e022023f152efdf0ca5c14ded +# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/20964 +# from-commit: 7d539a9e599d8bc5ac2bda6ee9587ef62351ee03 + - Transrate-1.0.3-GCC-12.3.0.eb +# PR 20833 is included since EB 4.9.3 +# - Critic2-1.2-foss-2023a.eb: +# options: +# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/20833 +# from-commit: 78426c2383fc7e4b9b9e77d7a77f336e1bee3843 + - Critic2-1.2-foss-2023a.eb +# PR 21310 is included since EB 4.9.3 +# - LRBinner-0.1-foss-2023a.eb: +# options: +# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21310 +# from-commit: 799d9101df2cf81aabe252f00cc82a7246363f53 + - LRBinner-0.1-foss-2023a.eb +# PR 21227 is included since EB 4.9.3 +# - Redland-1.0.17-GCC-12.3.0.eb: +# options: +# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21227 +# from-commit: 4c5e3455dec31e68e8383c7fd86d1f80c434676d + - Redland-1.0.17-GCC-12.3.0.eb From 384ff3d4c334808278dbb63eba3a91b3bf2ff14a Mon Sep 17 00:00:00 2001 From: Thomas Roeblitz Date: Tue, 27 May 2025 14:28:01 +0200 Subject: [PATCH 2/4] fix indentation in easystack file --- .../a64fx/eessi-2023.06-eb-4.9.4-2023a.yml | 110 +++++++++--------- 1 file changed, 55 insertions(+), 55 deletions(-) diff --git a/easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-4.9.4-2023a.yml b/easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-4.9.4-2023a.yml index 96563ecec9..f77b3f58d6 100644 --- a/easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-4.9.4-2023a.yml +++ b/easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-4.9.4-2023a.yml @@ -300,15 +300,15 @@ easyconfigs: # from here on apps were originally built with EB 4.9.2 # PR 20958 is included since EB 4.9.3 # - OpenFOAM-10-foss-2023a.eb: -# options: -# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/20958 -# from-commit: dbadb2074464d816740ee0e95595c2cb31b6338f +# options: +# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/20958 +# from-commit: dbadb2074464d816740ee0e95595c2cb31b6338f - OpenFOAM-10-foss-2023a.eb # PR 20958 is included since EB 4.9.3 -# - OpenFOAM-11-foss-2023a.eb: -# options: -# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/20958 -# from-commit: dbadb2074464d816740ee0e95595c2cb31b6338f +# - OpenFOAM-11-foss-2023a.eb: +# options: +# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/20958 +# from-commit: dbadb2074464d816740ee0e95595c2cb31b6338f - OpenFOAM-11-foss-2023a.eb - BCFtools-1.18-GCC-12.3.0.eb - BWA-0.7.18-GCCcore-12.3.0.eb @@ -356,60 +356,60 @@ easyconfigs: - SciTools-Iris-3.9.0-foss-2023a.eb # PRs 20841 and 3338 were included since EB 4.9.3 # - OpenFOAM-v2312-foss-2023a.eb: -# options: -# # https://github.com/easybuilders/easybuild-easyblocks/pull/3388 -# include-easyblocks-from-commit: c8256a36e7062bc09f5ce30552a9de9827054c9e -# # https://github.com/easybuilders/easybuild-easyconfigs/pull/20841 -# from-commit: f0e91e6e430ebf902f7788ebb47f0203dee60649 +# options: +# # https://github.com/easybuilders/easybuild-easyblocks/pull/3388 +# include-easyblocks-from-commit: c8256a36e7062bc09f5ce30552a9de9827054c9e +# # https://github.com/easybuilders/easybuild-easyconfigs/pull/20841 +# from-commit: f0e91e6e430ebf902f7788ebb47f0203dee60649 - OpenFOAM-v2312-foss-2023a.eb # PR 21136 is included since EB 4.9.3 -# - BioPerl-1.7.8-GCCcore-12.3.0.eb: -# options: -# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21136 -# from-commit: d8076ebaf8cb915762adebf88d385cc672b350dc - - BioPerl-1.7.8-GCCcore-12.3.0.eb - - grpcio-1.57.0-GCCcore-12.3.0.eb +# - BioPerl-1.7.8-GCCcore-12.3.0.eb: +# options: +# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21136 +# from-commit: d8076ebaf8cb915762adebf88d385cc672b350dc + - BioPerl-1.7.8-GCCcore-12.3.0.eb + - grpcio-1.57.0-GCCcore-12.3.0.eb # PR 20880 is included since EB 4.9.3 -# - orjson-3.9.15-GCCcore-12.3.0.eb: -# options: -# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/20880 -# from-commit: bc6e08f89759b8b70166de5bfcb5056b9db8ec90 - - orjson-3.9.15-GCCcore-12.3.0.eb +# - orjson-3.9.15-GCCcore-12.3.0.eb: +# options: +# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/20880 +# from-commit: bc6e08f89759b8b70166de5bfcb5056b9db8ec90 + - orjson-3.9.15-GCCcore-12.3.0.eb # PR 21094 is included since EB 4.9.3 -# - wradlib-2.0.3-foss-2023a.eb: -# options: -# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21094 -# from-commit: 3a2e0b8e6ee45277d01fb7e2eb93027a28c9461a - - wradlib-2.0.3-foss-2023a.eb +# - wradlib-2.0.3-foss-2023a.eb: +# options: +# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21094 +# from-commit: 3a2e0b8e6ee45277d01fb7e2eb93027a28c9461a + - wradlib-2.0.3-foss-2023a.eb # PR 21155 is included since EB 4.9.3 -# - MBX-1.1.0-foss-2023a.eb: -# options: -# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21155 -# from-commit: 6929a67401f2a2ec58f91fb306332a77497d73ff - - MBX-1.1.0-foss-2023a.eb +# - MBX-1.1.0-foss-2023a.eb: +# options: +# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21155 +# from-commit: 6929a67401f2a2ec58f91fb306332a77497d73ff + - MBX-1.1.0-foss-2023a.eb # PRs 20964 and 3381 are included since EB 4.9.3 -# - Transrate-1.0.3-GCC-12.3.0.eb: -# options: -# # https://github.com/easybuilders/easybuild-easyblocks/pull/3381 -# include-easyblocks-from-commit: bb86f05d4917b29e022023f152efdf0ca5c14ded -# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/20964 -# from-commit: 7d539a9e599d8bc5ac2bda6ee9587ef62351ee03 - - Transrate-1.0.3-GCC-12.3.0.eb +# - Transrate-1.0.3-GCC-12.3.0.eb: +# options: +# # https://github.com/easybuilders/easybuild-easyblocks/pull/3381 +# include-easyblocks-from-commit: bb86f05d4917b29e022023f152efdf0ca5c14ded +# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/20964 +# from-commit: 7d539a9e599d8bc5ac2bda6ee9587ef62351ee03 + - Transrate-1.0.3-GCC-12.3.0.eb # PR 20833 is included since EB 4.9.3 -# - Critic2-1.2-foss-2023a.eb: -# options: -# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/20833 -# from-commit: 78426c2383fc7e4b9b9e77d7a77f336e1bee3843 - - Critic2-1.2-foss-2023a.eb +# - Critic2-1.2-foss-2023a.eb: +# options: +# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/20833 +# from-commit: 78426c2383fc7e4b9b9e77d7a77f336e1bee3843 + - Critic2-1.2-foss-2023a.eb # PR 21310 is included since EB 4.9.3 -# - LRBinner-0.1-foss-2023a.eb: -# options: -# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21310 -# from-commit: 799d9101df2cf81aabe252f00cc82a7246363f53 - - LRBinner-0.1-foss-2023a.eb +# - LRBinner-0.1-foss-2023a.eb: +# options: +# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21310 +# from-commit: 799d9101df2cf81aabe252f00cc82a7246363f53 + - LRBinner-0.1-foss-2023a.eb # PR 21227 is included since EB 4.9.3 -# - Redland-1.0.17-GCC-12.3.0.eb: -# options: -# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21227 -# from-commit: 4c5e3455dec31e68e8383c7fd86d1f80c434676d - - Redland-1.0.17-GCC-12.3.0.eb +# - Redland-1.0.17-GCC-12.3.0.eb: +# options: +# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21227 +# from-commit: 4c5e3455dec31e68e8383c7fd86d1f80c434676d + - Redland-1.0.17-GCC-12.3.0.eb From 76a0febe4a0325857deede8bd1d8ccbae4ff4247 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bob=20Dr=C3=B6ge?= Date: Tue, 7 Oct 2025 14:05:41 +0200 Subject: [PATCH 3/4] Update easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-4.9.4-2023a.yml --- .../a64fx/eessi-2023.06-eb-4.9.4-2023a.yml | 67 ------------------- 1 file changed, 67 deletions(-) diff --git a/easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-4.9.4-2023a.yml b/easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-4.9.4-2023a.yml index 40f9aec76b..0b76376d99 100644 --- a/easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-4.9.4-2023a.yml +++ b/easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-4.9.4-2023a.yml @@ -352,70 +352,3 @@ easyconfigs: - amdahl-0.3.1-gompi-2023a.eb - LLVM-14.0.6-GCCcore-12.3.0-llvmlite.eb - numba-0.58.1-foss-2023a.eb -# PR 21434 is included since EB 4.9.4 -# - librosa-0.10.1-foss-2023a.eb: -# options: -# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21434 -# from-commit: 4b6170603150c9c93602b0deb726869d19a390f0 - - librosa-0.10.1-foss-2023a.eb - - xarray-2023.9.0-gfbf-2023a.eb - - SciTools-Iris-3.9.0-foss-2023a.eb -# PRs 20841 and 3338 were included since EB 4.9.3 -# - OpenFOAM-v2312-foss-2023a.eb: -# options: -# # https://github.com/easybuilders/easybuild-easyblocks/pull/3388 -# include-easyblocks-from-commit: c8256a36e7062bc09f5ce30552a9de9827054c9e -# # https://github.com/easybuilders/easybuild-easyconfigs/pull/20841 -# from-commit: f0e91e6e430ebf902f7788ebb47f0203dee60649 - - OpenFOAM-v2312-foss-2023a.eb -# PR 21136 is included since EB 4.9.3 -# - BioPerl-1.7.8-GCCcore-12.3.0.eb: -# options: -# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21136 -# from-commit: d8076ebaf8cb915762adebf88d385cc672b350dc - - BioPerl-1.7.8-GCCcore-12.3.0.eb - - grpcio-1.57.0-GCCcore-12.3.0.eb -# PR 20880 is included since EB 4.9.3 -# - orjson-3.9.15-GCCcore-12.3.0.eb: -# options: -# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/20880 -# from-commit: bc6e08f89759b8b70166de5bfcb5056b9db8ec90 - - orjson-3.9.15-GCCcore-12.3.0.eb -# PR 21094 is included since EB 4.9.3 -# - wradlib-2.0.3-foss-2023a.eb: -# options: -# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21094 -# from-commit: 3a2e0b8e6ee45277d01fb7e2eb93027a28c9461a - - wradlib-2.0.3-foss-2023a.eb -# PR 21155 is included since EB 4.9.3 -# - MBX-1.1.0-foss-2023a.eb: -# options: -# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21155 -# from-commit: 6929a67401f2a2ec58f91fb306332a77497d73ff - - MBX-1.1.0-foss-2023a.eb -# PRs 20964 and 3381 are included since EB 4.9.3 -# - Transrate-1.0.3-GCC-12.3.0.eb: -# options: -# # https://github.com/easybuilders/easybuild-easyblocks/pull/3381 -# include-easyblocks-from-commit: bb86f05d4917b29e022023f152efdf0ca5c14ded -# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/20964 -# from-commit: 7d539a9e599d8bc5ac2bda6ee9587ef62351ee03 - - Transrate-1.0.3-GCC-12.3.0.eb -# PR 20833 is included since EB 4.9.3 -# - Critic2-1.2-foss-2023a.eb: -# options: -# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/20833 -# from-commit: 78426c2383fc7e4b9b9e77d7a77f336e1bee3843 - - Critic2-1.2-foss-2023a.eb -# PR 21310 is included since EB 4.9.3 -# - LRBinner-0.1-foss-2023a.eb: -# options: -# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21310 -# from-commit: 799d9101df2cf81aabe252f00cc82a7246363f53 - - LRBinner-0.1-foss-2023a.eb -# PR 21227 is included since EB 4.9.3 -# - Redland-1.0.17-GCC-12.3.0.eb: -# options: -# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21227 -# from-commit: 4c5e3455dec31e68e8383c7fd86d1f80c434676d - - Redland-1.0.17-GCC-12.3.0.eb From fc7b9546f29899898360d00529ab3a7e9b28557e Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bob=20Dr=C3=B6ge?= Date: Tue, 7 Oct 2025 20:00:22 +0200 Subject: [PATCH 4/4] Update easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-4.9.4-2023a.yml --- .../a64fx/eessi-2023.06-eb-4.9.4-2023a.yml | 17 ----------------- 1 file changed, 17 deletions(-) diff --git a/easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-4.9.4-2023a.yml b/easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-4.9.4-2023a.yml index 0b76376d99..bb235f9cad 100644 --- a/easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-4.9.4-2023a.yml +++ b/easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-4.9.4-2023a.yml @@ -335,20 +335,3 @@ easyconfigs: - MAFFT-7.520-GCC-12.3.0-with-extensions.eb - ncbi-vdb-3.0.10-gompi-2023a.eb - MetalWalls-21.06.1-foss-2023a.eb -# PRs 20138 and 3338 were included since EB 4.9.3 -# - QuantumESPRESSO-7.3.1-foss-2023a.eb: -# options: -# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/20138 -# from-commit: dbdaacc0739fdee91baa9123864ea4428cf21273 -# # see https://github.com/easybuilders/easybuild-easyblocks/pull/3338 -# include-easyblocks-from-commit: 32e45bd1f2d916732ca5852d55d17fa4d99e388b - - QuantumESPRESSO-7.3.1-foss-2023a.eb -# PR 20951 is included since EB 4.9.3 -# - CP2K-2023.1-foss-2023a.eb: -# options: -# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/20951 -# from-commit: a92667fe32396bbd4106243658625f7ff2adcd68 - - CP2K-2023.1-foss-2023a.eb - - amdahl-0.3.1-gompi-2023a.eb - - LLVM-14.0.6-GCCcore-12.3.0-llvmlite.eb - - numba-0.58.1-foss-2023a.eb