From baa18e7472424a31904c0540ca4c76e8d8c829ea Mon Sep 17 00:00:00 2001 From: Rodolfo Dirack Date: Sat, 12 Sep 2020 18:19:02 -0300 Subject: [PATCH 01/17] Explicit dependecies of experiments #44 Use Depends scons method to explicit declare dependencies to scons --- experiments/fullInterpolationAndStack/SConstruct | 8 ++++++++ experiments/fullInterpolationAndStackCDS/SConstruct | 8 ++++++++ 2 files changed, 16 insertions(+) diff --git a/experiments/fullInterpolationAndStack/SConstruct b/experiments/fullInterpolationAndStack/SConstruct index cba23ea..5c00afc 100644 --- a/experiments/fullInterpolationAndStack/SConstruct +++ b/experiments/fullInterpolationAndStack/SConstruct @@ -26,6 +26,11 @@ from creStack import pefInterpolation as pefin # Import glob python library import glob +# Stablish building dependencies +Depends('interpolatedDataCube.rsf','dataCube.rsf') +Depends('interpolatedDataCube2.rsf','interpolatedDataCube.rsf') +Depends('crsParameters-m0-0-t0-0.rsf','interpolatedDataCube2.rsf') + # Generate Gaussian reflector model and data cube kimod() @@ -160,6 +165,9 @@ for i in range(nm0): files = glob.glob('creStackedTrace-*.rsf') length = len(files) +# Stacked section depends of the last CRE stacked trace +Depends('stackedSection.rsf','creStackedTrace-m0-'+str(length-1)+'.rsf') + sortedFiles = [] for i in range(length): string = 'creStackedTrace-m0-%i.rsf' % i diff --git a/experiments/fullInterpolationAndStackCDS/SConstruct b/experiments/fullInterpolationAndStackCDS/SConstruct index 9975780..b030e82 100644 --- a/experiments/fullInterpolationAndStackCDS/SConstruct +++ b/experiments/fullInterpolationAndStackCDS/SConstruct @@ -29,6 +29,11 @@ from creStack import pefInterpolation as pefin # Import glob python library import glob +# Stablish building dependencies +Depends('interpolatedDataCube.rsf','dataCube.rsf') +Depends('interpolatedDataCube2.rsf','interpolatedDataCube.rsf') +Depends('crsParameters-m0-0-t0-0.rsf','interpolatedDataCube2.rsf') + # Generate Gaussian reflector model and data cube kimod() @@ -163,6 +168,9 @@ for i in range(nm0): files = glob.glob('creStackedTrace-*.rsf') length = len(files) +# Stacked section depends of the last CRE stacked trace +Depends('stackedSection.rsf','creStackedTrace-m0-'+str(length-1)+'.rsf') + sortedFiles = [] for i in range(length): string = 'creStackedTrace-m0-%i.rsf' % i From 3cdc48cbb74d39fb8af780c7d391761bcf7e844d Mon Sep 17 00:00:00 2001 From: Rodolfo Dirack Date: Sat, 12 Sep 2020 18:48:20 -0300 Subject: [PATCH 02/17] Add pefInterpolation.py recipe to the experiments #43 Changes pefInterpolation function calling from fullInterpolationAndStack experiments. The pefInterpolation.py recipe is now part of official Madagascar package. Because of that, SConstruct can call it from local Madagascar installation. --- .../fullInterpolationAndStack/SConstruct | 71 +++++--- .../fullInterpolationAndStack/creStack.py | 165 ------------------ .../fullInterpolationAndStack/kimodel.py | 57 ++++++ .../fullInterpolationAndStackCDS/SConstruct | 78 +++++---- .../fullInterpolationAndStackCDS/creStack.py | 165 ------------------ .../fullInterpolationAndStackCDS/kimodel.py | 57 ++++++ 6 files changed, 206 insertions(+), 387 deletions(-) delete mode 100644 experiments/fullInterpolationAndStack/creStack.py create mode 100644 experiments/fullInterpolationAndStack/kimodel.py delete mode 100644 experiments/fullInterpolationAndStackCDS/creStack.py create mode 100644 experiments/fullInterpolationAndStackCDS/kimodel.py diff --git a/experiments/fullInterpolationAndStack/SConstruct b/experiments/fullInterpolationAndStack/SConstruct index 5c00afc..bf95023 100644 --- a/experiments/fullInterpolationAndStack/SConstruct +++ b/experiments/fullInterpolationAndStack/SConstruct @@ -3,12 +3,12 @@ # # SConstruct (Madagascar Script) # -# Purpose: Build the interpolation process twice to improve CMP sampling -# and CRE stacking results. +# Purpose: Common Reflection Element (CRE) stack applied to a seismic data cube +# from Kirchhoff modeling of a gaussian reflector in a linear velocity model. # -# Site: http://www.dirackslounge.online +# Site: http://diracks.github.io # -# Version 1.0 +# Version 2.0 # # Programer: Rodolfo A. C. Neves (Dirack) 04/03/2020 # @@ -19,14 +19,14 @@ # Madagascar package from rsf.proj import * -# CRE recipe -from creStack import kirchoffModeling as kimod -from creStack import pefInterpolation as pefin +# Recipes +from kimodel import kirchoffModeling as kimod +from rsf.recipes.pefInterpolation import pefInterpolation as pef # Import glob python library import glob -# Stablish building dependencies +# Establish building dependencies Depends('interpolatedDataCube.rsf','dataCube.rsf') Depends('interpolatedDataCube2.rsf','interpolatedDataCube.rsf') Depends('crsParameters-m0-0-t0-0.rsf','interpolatedDataCube2.rsf') @@ -34,25 +34,42 @@ Depends('crsParameters-m0-0-t0-0.rsf','interpolatedDataCube2.rsf') # Generate Gaussian reflector model and data cube kimod() -# PEF interpolation of the data cube -pefin('dataCube', - 'interpolatedDataCube', - nm=401, - dm=0.025, - nt=1001, - dt=0.004, - nhi=161) - -# Do the PEF interpolation one more time -# to increase the CMP sampling -pefin('interpolatedDataCube', - 'interpolatedDataCube2', - nm=802, - dm=0.0125, - nt=1001, - dt=0.004, - nhi=161) - +# PEF coeficients +a1=10 +a2=2 + +# PEF smooth radius +rect1=50 +rect2 + +# PEF interpolation +pef('dataCube', + 'interpolatedDataCube', + nm=201, + dm=0.025, + nt=1001, + dt=0.004, + nhi=161, + a1=a1, + a2=a2, + rect1=rect1, + rect2=rect2 +) + +# PEF interpolation +pef('interpolatedDataCube', + 'interpolatedDataCube2', + nm=401, + dm=0.0125, + nt=1001, + dt=0.004, + nhi=161, + a1=a1, + a2=a2, + rect1=rect1, + rect2=rect2 +) + # CRE stacking # It uses Very Fast Simulated Aneeling and non hyperbolic CRS # to get zero offset CRS parameters (RN, RNIP and BETA) from data cube diff --git a/experiments/fullInterpolationAndStack/creStack.py b/experiments/fullInterpolationAndStack/creStack.py deleted file mode 100644 index f997200..0000000 --- a/experiments/fullInterpolationAndStack/creStack.py +++ /dev/null @@ -1,165 +0,0 @@ -#!/usr/bin/env python -# -*- coding: utf-8 -*- -# -# creStack (Python) -# -# Purpose: Recipe to the cre model, interpolation and Stacking. -# -# Important!: It should be called from a SConstruct -# -# Site: http://www.dirackslounge.online -# -# Version 1.0 -# -# Programer: Rodolfo A. C. Neves (Dirack) 04/03/2020 -# -# Email: rodolfo_profissional@hotmail.com -# -# License: GPL-3.0 . - -# Madagascar package -from rsf.proj import * - -def kirchoffModeling(filename='dataCube'): - ''' - Modeling function of a gaussian reflector - ''' - - # Modeling: Gaussian reflector in a velocity linear model - # velocity increases with depth with a 0.5 velocity gradient - Flow('gaussianReflector',None, - ''' - math d1=0.01 n1=2001 o1=-5 unit1=km label1=Offset - output="4-3*exp(-(x1-5)^2/9)" - ''') - - # Velocity Model - Flow('velocityModel','gaussianReflector', - ''' - window min1=0 max1=10 | - spray axis=1 n=451 d=0.01 o=0 label=Depth unit=km | - math output="1.5+0.5*x1+0.0*x2" - ''') - - Flow('reflectorDip','gaussianReflector','math output="2/3*(x1-5)*input" ') - - # Kirchoff Modeling - Flow(filename,'gaussianReflector reflectorDip', - ''' - kirmod cmp=y dip=${SOURCES[1]} - nh=161 dh=0.025 h0=0 - ns=401 ds=0.025 s0=0 - freq=10 dt=0.004 nt=1001 - vel=1.5 gradz=0.5 gradx=0.0 verb=y | - put d2=0.0125 label3="CMP" unit3="Km" label2="Offset" unit2="Km" label1=Time unit1=s - ''') - -def pefInterpolation( - dataCube, - interpolated, - nm, - dm, - nt, - dt, - nhi=1 - ): - ''' - PEF interpolation of the data cube - :param dataCube: filename, Seismic data cube to interpolate - :param interpolated: filename, Interpolated seismic data cube - :param nm: integer, number of CMPs in the seismic data cube - :param dm: float, CMP sampling - :param nt: integer, number of time samples - :param dt: float, time sampling - :param nhi: integer, number of constant offsets gathers to interpolate - ''' - - # Divide CMP sampling - dm = dm/2 - - # Define mask file names using input filename - mask1 = dataCube+'-mask1' - mask = dataCube+'-mask' - aa = dataCube+'-aa' - bb = dataCube+'-bb' - a = dataCube+'-a' - b = dataCube+'-b' - zeroTraceGather = dataCube+'-zeroedGather' - mask0 = dataCube+'-mask0' - - - # Build a mask to interleave zero traces with original data traces - Flow(aa,None,'spike n1=%i d1=%g o1=0' %(nm,dm)) - Flow(bb,None,'spike n1=%i d1=%g o1=0 mag=0' % (nm,dm)) - Flow(mask1,[bb, aa], - ''' - interleave axis=1 ${SOURCES[1]} | - dd type=int - ''') - - Flow(a,None,'spike n1=%i d1=%g o1=0' % (nm,dm)) - Flow(b,None,'spike n1=%i d1=%g o1=0 mag=0' % (nm,dm)) - Flow(mask,[a, b], - ''' - interleave axis=1 ${SOURCES[1]} | - dd type=int - ''') - Flow(zeroTraceGather,b, - ''' - spray axis=2 n=%i d=%g | - transp | - put label2=Offset unit2=Km label1=Time unit1=s - ''' %(nt,dm)) - - # Data Mask with double of traces in CMP (half of CMP sampling) - # Keep the same Time and Offset original data sampling - Flow(mask0,mask, - ''' - spray axis=1 n=%i d=%g - ''' %(nt,dt)) - - totalPefIterations = 100 - totalInterpolationIterations = 20 - - offsetGathers = [] - for offsetGatherIndex in range(nhi): - - offsetGather = dataCube+"-offsetGather-%i" % offsetGatherIndex - resampledOffsetGather = dataCube+"-resampledGather-%i" % offsetGatherIndex - interpolatedOffsetGather = dataCube+"-interpolatedGather-%i" % offsetGatherIndex - pefCoeficients = dataCube+"-pefCoeficients-%i" % offsetGatherIndex - - Flow(offsetGather,dataCube, - ''' - window n2=1 f2=%i - ''' % (offsetGatherIndex)) - - Flow(resampledOffsetGather,[offsetGather,zeroTraceGather], - ''' - interleave axis=2 ${SOURCES[1]} - ''') - - # Calculate adaptive PEF coeficients - Flow(pefCoeficients,[resampledOffsetGather,mask0], - ''' - apef jump=2 a=10,2 rect1=50 rect2=2 niter=%g verb=y - maskin=${SOURCES[1]} - ''' % (totalPefIterations)) - - # Interpolation - Flow(interpolatedOffsetGather, [resampledOffsetGather,pefCoeficients,mask0,mask1], - ''' - miss4 exact=y filt=${SOURCES[1]} mask=${SOURCES[2]} niter=%g verb=y | - put d2=%g - ''' % (totalInterpolationIterations,dm)) - - offsetGathers.append(interpolatedOffsetGather) - - # Concatenate interpolated sections - Flow(interpolated,offsetGathers, - ''' - rcat axis=3 ${SOURCES[1:%d]} | - transp plane=23 - ''' % nhi) - - diff --git a/experiments/fullInterpolationAndStack/kimodel.py b/experiments/fullInterpolationAndStack/kimodel.py new file mode 100644 index 0000000..2255f78 --- /dev/null +++ b/experiments/fullInterpolationAndStack/kimodel.py @@ -0,0 +1,57 @@ +#!/usr/bin/env python +# -*- coding: utf-8 -*- +# +# kimodel.py (Madagascar Recipe) +# +# Purpose: Recipe to Kirchhoff modeling of a gaussian reflector. +# +# Important!: It should be called from a SConstruct +# +# Site: https://dirack.github.io +# +# Version 2.0 +# +# Programer: Rodolfo A. C. Neves (Dirack) 04/03/2020 +# +# Email: rodolfo_profissional@hotmail.com +# +# License: GPL-3.0 . + +# Madagascar package +from rsf.proj import * + +def kirchoffModeling(filename='dataCube'): + ''' + Modeling function of a gaussian reflector + ''' + + # Modeling: Gaussian reflector in a velocity linear model + # velocity increases with depth with a 0.5 velocity gradient + Flow('gaussianReflector',None, + ''' + math d1=0.01 n1=2001 o1=-5 unit1=km label1=Offset + output="4-3*exp(-(x1-5)^2/9)" + ''') + + # Velocity Model + Flow('velocityModel','gaussianReflector', + ''' + window min1=0 max1=10 | + spray axis=1 n=451 d=0.01 o=0 label=Depth unit=km | + math output="1.5+0.5*x1+0.0*x2" + ''') + + Flow('reflectorDip','gaussianReflector','math output="2/3*(x1-5)*input" ') + + # Kirchoff Modeling + Flow(filename,'gaussianReflector reflectorDip', + ''' + kirmod cmp=y dip=${SOURCES[1]} + nh=161 dh=0.025 h0=0 + ns=401 ds=0.025 s0=0 + freq=10 dt=0.004 nt=1001 + vel=1.5 gradz=0.5 gradx=0.0 verb=y | + put d2=0.0125 label3="CMP" unit3="Km" label2="Offset" unit2="Km" label1=Time unit1=s + ''') + + diff --git a/experiments/fullInterpolationAndStackCDS/SConstruct b/experiments/fullInterpolationAndStackCDS/SConstruct index b030e82..1f30ee4 100644 --- a/experiments/fullInterpolationAndStackCDS/SConstruct +++ b/experiments/fullInterpolationAndStackCDS/SConstruct @@ -3,17 +3,18 @@ # # SConstruct (Madagascar Script) # -# Purpose: Build the interpolation process twice to improve CMP sampling -# and CRE stacking results. +# Purpose: Common Reflection Element (CRE) stack applied to a seismic data cube +# from Kirchhoff modeling of a gaussian reflector in a linear velocity model. # -# IMPORTANT: This SConstruct uses the non-hyperbolic CRS traveltime approximation -# with the CDS condition applied (RN=RNIP) as a stacking curve. +# Important!: This experiment uses non-hyperbolic Common Reflection Surface (CRS) +# traveltime approximation as stacking curve, with CDS condition (RNIP=RN) applied. +# Instead of conventional CRE traveltime approximation. # -# Site: http://www.dirackslounge.online +# Site: http://diracks.github.io # -# Version 1.0 +# Version 2.0 # -# Programer: Rodolfo A. C. Neves (Dirack) 16/03/2020 +# Programer: Rodolfo A. C. Neves (Dirack) 04/03/2020 # # Email: rodolfo_profissional@hotmail.com # @@ -22,14 +23,14 @@ # Madagascar package from rsf.proj import * -# CRE recipe -from creStack import kirchoffModeling as kimod -from creStack import pefInterpolation as pefin +# Recipes +from kimodel import kirchoffModeling as kimod +from rsf.recipes.pefInterpolation import pefInterpolation as pef # Import glob python library import glob -# Stablish building dependencies +# Establish building dependencies Depends('interpolatedDataCube.rsf','dataCube.rsf') Depends('interpolatedDataCube2.rsf','interpolatedDataCube.rsf') Depends('crsParameters-m0-0-t0-0.rsf','interpolatedDataCube2.rsf') @@ -37,25 +38,42 @@ Depends('crsParameters-m0-0-t0-0.rsf','interpolatedDataCube2.rsf') # Generate Gaussian reflector model and data cube kimod() -# PEF interpolation of the data cube -pefin('dataCube', - 'interpolatedDataCube', - nm=401, - dm=0.025, - nt=1001, - dt=0.004, - nhi=161) - -# Do the PEF interpolation one more time -# to increase the CMP sampling -pefin('interpolatedDataCube', - 'interpolatedDataCube2', - nm=802, - dm=0.0125, - nt=1001, - dt=0.004, - nhi=161) - +# PEF coeficients +a1=10 +a2=2 + +# PEF smooth radius +rect1=50 +rect2 + +# PEF interpolation +pef('dataCube', + 'interpolatedDataCube', + nm=201, + dm=0.025, + nt=1001, + dt=0.004, + nhi=161, + a1=a1, + a2=a2, + rect1=rect1, + rect2=rect2 +) + +# PEF interpolation +pef('interpolatedDataCube', + 'interpolatedDataCube2', + nm=401, + dm=0.0125, + nt=1001, + dt=0.004, + nhi=161, + a1=a1, + a2=a2, + rect1=rect1, + rect2=rect2 +) + # CRE stacking # It uses Very Fast Simulated Aneeling and non hyperbolic CRS # to get zero offset CRS parameters (RN, RNIP and BETA) from data cube diff --git a/experiments/fullInterpolationAndStackCDS/creStack.py b/experiments/fullInterpolationAndStackCDS/creStack.py deleted file mode 100644 index f997200..0000000 --- a/experiments/fullInterpolationAndStackCDS/creStack.py +++ /dev/null @@ -1,165 +0,0 @@ -#!/usr/bin/env python -# -*- coding: utf-8 -*- -# -# creStack (Python) -# -# Purpose: Recipe to the cre model, interpolation and Stacking. -# -# Important!: It should be called from a SConstruct -# -# Site: http://www.dirackslounge.online -# -# Version 1.0 -# -# Programer: Rodolfo A. C. Neves (Dirack) 04/03/2020 -# -# Email: rodolfo_profissional@hotmail.com -# -# License: GPL-3.0 . - -# Madagascar package -from rsf.proj import * - -def kirchoffModeling(filename='dataCube'): - ''' - Modeling function of a gaussian reflector - ''' - - # Modeling: Gaussian reflector in a velocity linear model - # velocity increases with depth with a 0.5 velocity gradient - Flow('gaussianReflector',None, - ''' - math d1=0.01 n1=2001 o1=-5 unit1=km label1=Offset - output="4-3*exp(-(x1-5)^2/9)" - ''') - - # Velocity Model - Flow('velocityModel','gaussianReflector', - ''' - window min1=0 max1=10 | - spray axis=1 n=451 d=0.01 o=0 label=Depth unit=km | - math output="1.5+0.5*x1+0.0*x2" - ''') - - Flow('reflectorDip','gaussianReflector','math output="2/3*(x1-5)*input" ') - - # Kirchoff Modeling - Flow(filename,'gaussianReflector reflectorDip', - ''' - kirmod cmp=y dip=${SOURCES[1]} - nh=161 dh=0.025 h0=0 - ns=401 ds=0.025 s0=0 - freq=10 dt=0.004 nt=1001 - vel=1.5 gradz=0.5 gradx=0.0 verb=y | - put d2=0.0125 label3="CMP" unit3="Km" label2="Offset" unit2="Km" label1=Time unit1=s - ''') - -def pefInterpolation( - dataCube, - interpolated, - nm, - dm, - nt, - dt, - nhi=1 - ): - ''' - PEF interpolation of the data cube - :param dataCube: filename, Seismic data cube to interpolate - :param interpolated: filename, Interpolated seismic data cube - :param nm: integer, number of CMPs in the seismic data cube - :param dm: float, CMP sampling - :param nt: integer, number of time samples - :param dt: float, time sampling - :param nhi: integer, number of constant offsets gathers to interpolate - ''' - - # Divide CMP sampling - dm = dm/2 - - # Define mask file names using input filename - mask1 = dataCube+'-mask1' - mask = dataCube+'-mask' - aa = dataCube+'-aa' - bb = dataCube+'-bb' - a = dataCube+'-a' - b = dataCube+'-b' - zeroTraceGather = dataCube+'-zeroedGather' - mask0 = dataCube+'-mask0' - - - # Build a mask to interleave zero traces with original data traces - Flow(aa,None,'spike n1=%i d1=%g o1=0' %(nm,dm)) - Flow(bb,None,'spike n1=%i d1=%g o1=0 mag=0' % (nm,dm)) - Flow(mask1,[bb, aa], - ''' - interleave axis=1 ${SOURCES[1]} | - dd type=int - ''') - - Flow(a,None,'spike n1=%i d1=%g o1=0' % (nm,dm)) - Flow(b,None,'spike n1=%i d1=%g o1=0 mag=0' % (nm,dm)) - Flow(mask,[a, b], - ''' - interleave axis=1 ${SOURCES[1]} | - dd type=int - ''') - Flow(zeroTraceGather,b, - ''' - spray axis=2 n=%i d=%g | - transp | - put label2=Offset unit2=Km label1=Time unit1=s - ''' %(nt,dm)) - - # Data Mask with double of traces in CMP (half of CMP sampling) - # Keep the same Time and Offset original data sampling - Flow(mask0,mask, - ''' - spray axis=1 n=%i d=%g - ''' %(nt,dt)) - - totalPefIterations = 100 - totalInterpolationIterations = 20 - - offsetGathers = [] - for offsetGatherIndex in range(nhi): - - offsetGather = dataCube+"-offsetGather-%i" % offsetGatherIndex - resampledOffsetGather = dataCube+"-resampledGather-%i" % offsetGatherIndex - interpolatedOffsetGather = dataCube+"-interpolatedGather-%i" % offsetGatherIndex - pefCoeficients = dataCube+"-pefCoeficients-%i" % offsetGatherIndex - - Flow(offsetGather,dataCube, - ''' - window n2=1 f2=%i - ''' % (offsetGatherIndex)) - - Flow(resampledOffsetGather,[offsetGather,zeroTraceGather], - ''' - interleave axis=2 ${SOURCES[1]} - ''') - - # Calculate adaptive PEF coeficients - Flow(pefCoeficients,[resampledOffsetGather,mask0], - ''' - apef jump=2 a=10,2 rect1=50 rect2=2 niter=%g verb=y - maskin=${SOURCES[1]} - ''' % (totalPefIterations)) - - # Interpolation - Flow(interpolatedOffsetGather, [resampledOffsetGather,pefCoeficients,mask0,mask1], - ''' - miss4 exact=y filt=${SOURCES[1]} mask=${SOURCES[2]} niter=%g verb=y | - put d2=%g - ''' % (totalInterpolationIterations,dm)) - - offsetGathers.append(interpolatedOffsetGather) - - # Concatenate interpolated sections - Flow(interpolated,offsetGathers, - ''' - rcat axis=3 ${SOURCES[1:%d]} | - transp plane=23 - ''' % nhi) - - diff --git a/experiments/fullInterpolationAndStackCDS/kimodel.py b/experiments/fullInterpolationAndStackCDS/kimodel.py new file mode 100644 index 0000000..2255f78 --- /dev/null +++ b/experiments/fullInterpolationAndStackCDS/kimodel.py @@ -0,0 +1,57 @@ +#!/usr/bin/env python +# -*- coding: utf-8 -*- +# +# kimodel.py (Madagascar Recipe) +# +# Purpose: Recipe to Kirchhoff modeling of a gaussian reflector. +# +# Important!: It should be called from a SConstruct +# +# Site: https://dirack.github.io +# +# Version 2.0 +# +# Programer: Rodolfo A. C. Neves (Dirack) 04/03/2020 +# +# Email: rodolfo_profissional@hotmail.com +# +# License: GPL-3.0 . + +# Madagascar package +from rsf.proj import * + +def kirchoffModeling(filename='dataCube'): + ''' + Modeling function of a gaussian reflector + ''' + + # Modeling: Gaussian reflector in a velocity linear model + # velocity increases with depth with a 0.5 velocity gradient + Flow('gaussianReflector',None, + ''' + math d1=0.01 n1=2001 o1=-5 unit1=km label1=Offset + output="4-3*exp(-(x1-5)^2/9)" + ''') + + # Velocity Model + Flow('velocityModel','gaussianReflector', + ''' + window min1=0 max1=10 | + spray axis=1 n=451 d=0.01 o=0 label=Depth unit=km | + math output="1.5+0.5*x1+0.0*x2" + ''') + + Flow('reflectorDip','gaussianReflector','math output="2/3*(x1-5)*input" ') + + # Kirchoff Modeling + Flow(filename,'gaussianReflector reflectorDip', + ''' + kirmod cmp=y dip=${SOURCES[1]} + nh=161 dh=0.025 h0=0 + ns=401 ds=0.025 s0=0 + freq=10 dt=0.004 nt=1001 + vel=1.5 gradz=0.5 gradx=0.0 verb=y | + put d2=0.0125 label3="CMP" unit3="Km" label2="Offset" unit2="Km" label1=Time unit1=s + ''') + + From 3617fe98912e26dfd6745f360ea2fdf719d3b3a3 Mon Sep 17 00:00:00 2001 From: Rodolfo Dirack Date: Sat, 12 Sep 2020 19:02:40 -0300 Subject: [PATCH 03/17] Delete error report function calling #43 Error report function was deleted from official repository because it makes building and error report slow. Use python logging functions to report errors in SCons --- experiments/fullInterpolationAndStack/SConstruct | 2 +- experiments/multiLayerModel/cds/SConscript2 | 11 ----------- experiments/multiLayerModel/cds/SConstruct | 11 ----------- experiments/multiLayerModel/cre/SConscript2 | 11 ----------- experiments/multiLayerModel/cre/SConstruct | 11 ----------- 5 files changed, 1 insertion(+), 45 deletions(-) diff --git a/experiments/fullInterpolationAndStack/SConstruct b/experiments/fullInterpolationAndStack/SConstruct index bf95023..0bd7e9d 100644 --- a/experiments/fullInterpolationAndStack/SConstruct +++ b/experiments/fullInterpolationAndStack/SConstruct @@ -6,7 +6,7 @@ # Purpose: Common Reflection Element (CRE) stack applied to a seismic data cube # from Kirchhoff modeling of a gaussian reflector in a linear velocity model. # -# Site: http://diracks.github.io +# Site: https://dirack.github.io # # Version 2.0 # diff --git a/experiments/multiLayerModel/cds/SConscript2 b/experiments/multiLayerModel/cds/SConscript2 index 0c63c46..866f816 100644 --- a/experiments/multiLayerModel/cds/SConscript2 +++ b/experiments/multiLayerModel/cds/SConscript2 @@ -18,10 +18,6 @@ # Madagascar package from rsf.proj import * -# Error report function -import atexit -from madagascarRecipes.errorReport import print_build_failures - import glob # Build the cre stacked section @@ -51,11 +47,4 @@ Result('filtStackedSection','grey title="Filtered Stacked Section"') # Use aliases to split building Alias('stack',['stackedSection.rsf','filtStackedSection.rsf']) -# Show error message if fail - -message = ''' -SCosncript Failed build -''' - -atexit.register(print_build_failures,message) End() diff --git a/experiments/multiLayerModel/cds/SConstruct b/experiments/multiLayerModel/cds/SConstruct index 582bf15..f6eacf8 100644 --- a/experiments/multiLayerModel/cds/SConstruct +++ b/experiments/multiLayerModel/cds/SConstruct @@ -22,10 +22,6 @@ from rsf.proj import * # Import glob python library import glob -# Error report function -import atexit -from madagascarRecipes.errorReport import print_build_failures - # Call SConscript to generate input: original and interpolated data cubes SConscript('SConscript') @@ -157,11 +153,4 @@ Flow('filtStackedSection','stackedSection', bandpass fhi=20 --out=stdout ''') -# Show error message if fail -message = ''' -SConstruct Failed build when m0={m0} and t0={t0} -'''.format(m0=(i*dm0+om0),t0=(j*dt0+ot0)) - -atexit.register(print_build_failures,message) - End() diff --git a/experiments/multiLayerModel/cre/SConscript2 b/experiments/multiLayerModel/cre/SConscript2 index 0c63c46..866f816 100644 --- a/experiments/multiLayerModel/cre/SConscript2 +++ b/experiments/multiLayerModel/cre/SConscript2 @@ -18,10 +18,6 @@ # Madagascar package from rsf.proj import * -# Error report function -import atexit -from madagascarRecipes.errorReport import print_build_failures - import glob # Build the cre stacked section @@ -51,11 +47,4 @@ Result('filtStackedSection','grey title="Filtered Stacked Section"') # Use aliases to split building Alias('stack',['stackedSection.rsf','filtStackedSection.rsf']) -# Show error message if fail - -message = ''' -SCosncript Failed build -''' - -atexit.register(print_build_failures,message) End() diff --git a/experiments/multiLayerModel/cre/SConstruct b/experiments/multiLayerModel/cre/SConstruct index 5e8513d..f6d0e0d 100644 --- a/experiments/multiLayerModel/cre/SConstruct +++ b/experiments/multiLayerModel/cre/SConstruct @@ -22,10 +22,6 @@ from rsf.proj import * # Import glob python library import glob -# Error report function -import atexit -from madagascarRecipes.errorReport import print_build_failures - # Call SConscript to generate input: original and interpolated data cubes # SConscript('SConscript') @@ -156,11 +152,4 @@ Flow('filtStackedSection','stackedSection', bandpass fhi=20 --out=stdout ''') -# Show error message if fail -message = ''' -SConstruct Failed build when m0={m0} and t0={t0} -'''.format(m0=(i*dm0+om0),t0=(j*dt0+ot0)) - -atexit.register(print_build_failures,message) - End() From 1a2929424eefbd88c8d93a9d7236fa6484b75f56 Mon Sep 17 00:00:00 2001 From: Rodolfo Dirack Date: Sat, 12 Sep 2020 19:12:49 -0300 Subject: [PATCH 04/17] All the work in SConstruct and use Madagascar recipes #43 The building of the experiment is splitted in several SConscripts. Concatenate all the building steps in one SConstruct. And use the Madagascar recipes 'kimodel.py' and 'pefInterpolation.py'. Those recipes are available in the official Madagascar package repository on github. Because of that they can be called from SConstruct. --- experiments/multiLayerModel/cds/SConscript | 84 ---------------- experiments/multiLayerModel/cds/SConscript2 | 50 ---------- experiments/multiLayerModel/cds/SConstruct | 88 +++++++++++++++-- experiments/multiLayerModel/cre/SConscript | 100 -------------------- experiments/multiLayerModel/cre/SConscript2 | 50 ---------- experiments/multiLayerModel/cre/SConstruct | 79 ++++++++++++++-- 6 files changed, 150 insertions(+), 301 deletions(-) delete mode 100644 experiments/multiLayerModel/cds/SConscript delete mode 100644 experiments/multiLayerModel/cds/SConscript2 delete mode 100644 experiments/multiLayerModel/cre/SConscript delete mode 100644 experiments/multiLayerModel/cre/SConscript2 diff --git a/experiments/multiLayerModel/cds/SConscript b/experiments/multiLayerModel/cds/SConscript deleted file mode 100644 index 4d8215f..0000000 --- a/experiments/multiLayerModel/cds/SConscript +++ /dev/null @@ -1,84 +0,0 @@ -#!/usr/bin/env python -# -*- coding: utf-8 -*- -# -# SConscript (Madagascar Script) -# -# Purpose: Generate model and data cubes to CRE stacking process. -# This script generates model, original and PEF interpolated data cubes. -# It depends of the 'creStack.py' script that defines functions. -# -# Site: http://www.dirackslounge.online -# -# Version 1.0 -# -# Programer: Rodolfo A. C. Neves (Dirack) 04/03/2020 -# -# Email: rodolfo_profissional@hotmail.com -# -# License: GPL-3.0 . - -# Madagascar package -from rsf.proj import * - -# CRE recipe -from madagascarRecipes.pefInterpolation import pefInterpolation as pefin -from madagascarRecipes.kimodel import multiLayerModel as mlmod -from madagascarRecipes.kimodel import kirchoffNewtonModeling as kinewmod - -xmax = 6.0 -zmax = 2.0 - -layers = ((0.30,0.50,0.20,0.30), - (1.65,1.85,1.55,1.65)) - -velocities = (1.508, - 1.690, - 2.0) - -# Generate multi layer model and data cube -mlmod(interfaces='interfaces', - dipsfile='interfacesDip', - modelfile='mod1', - xmax=xmax, - zmax=zmax, - layers=layers, - velocities=velocities) - -kinewmod(reflectors='interfaces', - reflectorsDip='interfacesDip', - filename='multiLayerDataCube', - velocities=velocities) - -# PEF interpolation of the data cube -a1=10 -a2=2 -rect1=50 -rect2=2 - -pefin(dataCube='multiLayerDataCube', - interpolated='interpolatedDataCube', - nm=201, - dm=0.025, - nt=1001, - dt=0.004, - nhi=161, - a1=a1, - a2=a2, - rect1=rect1, - rect2=rect2) - -# Do the PEF interpolation one more time -# to increase the CMP sampling -pefin('interpolatedDataCube', - 'interpolatedDataCube2', - nm=402, - dm=0.0125, - nt=1001, - dt=0.004, - nhi=161, - a1=a1, - a2=a2, - rect1=rect1, - rect2=rect2) - -End() diff --git a/experiments/multiLayerModel/cds/SConscript2 b/experiments/multiLayerModel/cds/SConscript2 deleted file mode 100644 index 866f816..0000000 --- a/experiments/multiLayerModel/cds/SConscript2 +++ /dev/null @@ -1,50 +0,0 @@ -#!/usr/bin/env python -# -*- coding: utf-8 -*- -# -# SConscript (Madagascar Script) -# -# Purpose: Contatenate CRE stacked traces. -# -# Site: http://www.dirackslounge.online -# -# Version 1.0 -# -# Programer: Rodolfo A. C. Neves (Dirack) 04/03/2020 -# -# Email: rodolfo_profissional@hotmail.com -# -# License: GPL-3.0 . - -# Madagascar package -from rsf.proj import * - -import glob - -# Build the cre stacked section -# throughout cre stacked traces sorting -files = glob.glob('creStackedTrace-*.rsf') -length = len(files) - -sortedFiles = [] -for i in range(length): - string = 'creStackedTrace-m0-%i.rsf' % i - sortedFiles.append(string) - -Flow('stackedSection',sortedFiles, - ''' - rcat axis=2 ${SOURCES[1:%d]} --out=stdout - ''' % len(files)) - -Result('stackedSection','grey title="Stacked Section"') - -Flow('filtStackedSection','stackedSection', - ''' - bandpass fhi=20 --out=stdout - ''') - -Result('filtStackedSection','grey title="Filtered Stacked Section"') - -# Use aliases to split building -Alias('stack',['stackedSection.rsf','filtStackedSection.rsf']) - -End() diff --git a/experiments/multiLayerModel/cds/SConstruct b/experiments/multiLayerModel/cds/SConstruct index f6eacf8..b4699e2 100644 --- a/experiments/multiLayerModel/cds/SConstruct +++ b/experiments/multiLayerModel/cds/SConstruct @@ -3,12 +3,16 @@ # # SConstruct (Madagascar Script) # -# Purpose: Build the interpolation process twice to improve CMP sampling -# and CRE stacking results (Use CDS condition). +# Purpose: Common Reflection Element (CRE) stack applied to a seismic data cube +# from Kirchhoff Newton modeling of a multi layer velocity model. # -# Site: http://www.dirackslounge.online +# Important!: This experiment uses non-hyperbolic Common Reflection Surface (CRS) +# traveltime approximation as stacking curve, with CDS condition (RNIP=RN) applied. +# Instead of conventional CRE traveltime approximation. +# +# Site: https://dirack.github.io # -# Version 1.0 +# Version 2.0 # # Programer: Rodolfo A. C. Neves (Dirack) 04/03/2020 # @@ -22,10 +26,74 @@ from rsf.proj import * # Import glob python library import glob -# Call SConscript to generate input: original and interpolated data cubes -SConscript('SConscript') +# Recipes +from rsf.recipes.pefInterpolation import pefInterpolation as pef +from rsf.recipes.kimodel import multiLayerModel as mlmod +from rsf.recipes.kimodel import kirchoffNewtonModeling as kinewmod + +xmax = 6.0 +zmax = 2.0 + +layers = ((0.30,0.50,0.20,0.30), + (1.65,1.85,1.55,1.65)) + +velocities = (1.508, + 1.690, + 2.0) + +# Generate multi layer model and data cube +mlmod(interfaces='interfaces', + dipsfile='interfacesDip', + modelfile='mod1', + xmax=xmax, + zmax=zmax, + layers=layers, + velocities=velocities) + +# Generate a modeled data cube +kinewmod(reflectors='interfaces', + reflectorsDip='interfacesDip', + filename='multiLayerDataCube', + velocities=velocities, + nt=1001, + dt=0.004, + ns=201, + ds=0.025, + nh=161, + dh=0.025) + +# PEF interpolation of the data cube +a1=10 +a2=2 +rect1=50 +rect2=2 + +pef(dataCube='multiLayerDataCube', + interpolated='interpolatedDataCube', + nm=201, + dm=0.025, + nt=1001, + dt=0.004, + nhi=161, + a1=a1, + a2=a2, + rect1=rect1, + rect2=rect2) + +# Do the PEF interpolation one more time +# to increase the CMP sampling +pef('interpolatedDataCube', + 'interpolatedDataCube2', + nm=402, + dm=0.0125, + nt=1001, + dt=0.004, + nhi=161, + a1=a1, + a2=a2, + rect1=rect1, + rect2=rect2) -# CRE stacking # It uses Very Fast Simulated Aneeling and non hyperbolic CRS # to get zero offset CRS parameters (RN, RNIP and BETA) from data cube v0 = 1.5 @@ -35,7 +103,7 @@ nt0 = 331 om0 = 2 dm0 = 0.025 nm0 = 108 -dataCube='multiLayerDataCube' +dataCube='interpolatedDataCube2' for i in range(nm0): @@ -82,7 +150,7 @@ for i in range(nm0): # Calculate CRE traveltime curve t(m,h) Flow(creTimeCurve,[creMcoordinate, crsParameters], ''' - getcretimecurve cds=y param=${SOURCES[1]} t0=%g m0=%g v0=%g verb=y | + getcretimecurve param=${SOURCES[1]} cds=y t0=%g m0=%g v0=%g verb=y | put label1="Offset" unit1="Km" ''' % (t0,m0,v0)) @@ -129,7 +197,7 @@ for i in range(nm0): # CRE stacking Flow(creStackedTrace,[creGatherTrace,creTimeCurveTrace], ''' - crestack timeCurves=${SOURCES[1]} verb=y aperture=10 | + crestack timeCurves=${SOURCES[1]} verb=y | put label1=t0 unit1=s label2=m0 unit2=Km --out=stdout ''') diff --git a/experiments/multiLayerModel/cre/SConscript b/experiments/multiLayerModel/cre/SConscript deleted file mode 100644 index d006cfd..0000000 --- a/experiments/multiLayerModel/cre/SConscript +++ /dev/null @@ -1,100 +0,0 @@ -#!/usr/bin/env python -# -*- coding: utf-8 -*- -# -# SConscript (Madagascar Script) -# -# Purpose: Generate model and data cubes to CRE stacking process. -# This script generates model, original and PEF interpolated data cubes. -# It depends of the 'creStack.py' script that defines functions. -# -# Site: http://www.dirackslounge.online -# -# Version 1.0 -# -# Programer: Rodolfo A. C. Neves (Dirack) 04/03/2020 -# -# Email: rodolfo_profissional@hotmail.com -# -# License: GPL-3.0 . - -# Madagascar package -from rsf.proj import * - -# Error report function -import atexit -from madagascarRecipes.errorReport import print_build_failures - -# CRE recipe -from madagascarRecipes.pefInterpolation import pefInterpolation as pefin -from madagascarRecipes.kimodel import multiLayerModel as mlmod -from madagascarRecipes.kimodel import kirchoffNewtonModeling as kinewmod - -xmax = 6.0 -zmax = 2.0 - -layers = ((0.30,0.50,0.20,0.30), - (1.65,1.85,1.55,1.65)) - -velocities = (1.508, - 1.690, - 2.0) - -# Generate multi layer model and data cube -mlmod(interfaces='interfaces', - dipsfile='interfacesDip', - modelfile='mod1', - xmax=xmax, - zmax=zmax, - layers=layers, - velocities=velocities) - -kinewmod(reflectors='interfaces', - reflectorsDip='interfacesDip', - filename='multiLayerDataCube', - velocities=velocities) - -# PEF interpolation of the data cube -a1=10 -a2=2 -rect1=50 -rect2=2 - -pefin(dataCube='multiLayerDataCube', - interpolated='interpolatedDataCube', - nm=201, - dm=0.025, - nt=1001, - dt=0.004, - nhi=161, - a1=a1, - a2=a2, - rect1=rect1, - rect2=rect2) - -# Do the PEF interpolation one more time -# to increase the CMP sampling -pefin('interpolatedDataCube', - 'interpolatedDataCube2', - nm=402, - dm=0.0125, - nt=1001, - dt=0.004, - nhi=161, - a1=a1, - a2=a2, - rect1=rect1, - rect2=rect2) - -# Use aliases to split building -Alias('model','multiLayerDataCube.rsf') -Alias('pef1','interpolatedDataCube.rsf') -Alias('pef2','interpolatedDataCube2.rsf') - -# Show error message if fail - -message = ''' -SCosncript Failed build -''' - -atexit.register(print_build_failures,message) -End() diff --git a/experiments/multiLayerModel/cre/SConscript2 b/experiments/multiLayerModel/cre/SConscript2 deleted file mode 100644 index 866f816..0000000 --- a/experiments/multiLayerModel/cre/SConscript2 +++ /dev/null @@ -1,50 +0,0 @@ -#!/usr/bin/env python -# -*- coding: utf-8 -*- -# -# SConscript (Madagascar Script) -# -# Purpose: Contatenate CRE stacked traces. -# -# Site: http://www.dirackslounge.online -# -# Version 1.0 -# -# Programer: Rodolfo A. C. Neves (Dirack) 04/03/2020 -# -# Email: rodolfo_profissional@hotmail.com -# -# License: GPL-3.0 . - -# Madagascar package -from rsf.proj import * - -import glob - -# Build the cre stacked section -# throughout cre stacked traces sorting -files = glob.glob('creStackedTrace-*.rsf') -length = len(files) - -sortedFiles = [] -for i in range(length): - string = 'creStackedTrace-m0-%i.rsf' % i - sortedFiles.append(string) - -Flow('stackedSection',sortedFiles, - ''' - rcat axis=2 ${SOURCES[1:%d]} --out=stdout - ''' % len(files)) - -Result('stackedSection','grey title="Stacked Section"') - -Flow('filtStackedSection','stackedSection', - ''' - bandpass fhi=20 --out=stdout - ''') - -Result('filtStackedSection','grey title="Filtered Stacked Section"') - -# Use aliases to split building -Alias('stack',['stackedSection.rsf','filtStackedSection.rsf']) - -End() diff --git a/experiments/multiLayerModel/cre/SConstruct b/experiments/multiLayerModel/cre/SConstruct index f6d0e0d..af1a49c 100644 --- a/experiments/multiLayerModel/cre/SConstruct +++ b/experiments/multiLayerModel/cre/SConstruct @@ -3,12 +3,12 @@ # # SConstruct (Madagascar Script) # -# Purpose: Build the interpolation process twice to improve CMP sampling -# and CRE stacking results. +# Purpose: Common Reflection Element (CRE) stack applied to a seismic data cube +# from Kirchhoff Newton modeling of a multi layer velocity model. # -# Site: http://www.dirackslounge.online +# Site: https://dirack.github.io # -# Version 1.0 +# Version 2.0 # # Programer: Rodolfo A. C. Neves (Dirack) 04/03/2020 # @@ -22,8 +22,73 @@ from rsf.proj import * # Import glob python library import glob -# Call SConscript to generate input: original and interpolated data cubes -# SConscript('SConscript') +# Recipes +from rsf.recipes.pefInterpolation import pefInterpolation as pef +from rsf.recipes.kimodel import multiLayerModel as mlmod +from rsf.recipes.kimodel import kirchoffNewtonModeling as kinewmod + +xmax = 6.0 +zmax = 2.0 + +layers = ((0.30,0.50,0.20,0.30), + (1.65,1.85,1.55,1.65)) + +velocities = (1.508, + 1.690, + 2.0) + +# Generate multi layer model and data cube +mlmod(interfaces='interfaces', + dipsfile='interfacesDip', + modelfile='mod1', + xmax=xmax, + zmax=zmax, + layers=layers, + velocities=velocities) + +# Generate a modeled data cube +kinewmod(reflectors='interfaces', + reflectorsDip='interfacesDip', + filename='multiLayerDataCube', + velocities=velocities, + nt=1001, + dt=0.004, + ns=201, + ds=0.025, + nh=161, + dh=0.025) + +# PEF interpolation of the data cube +a1=10 +a2=2 +rect1=50 +rect2=2 + +pef(dataCube='multiLayerDataCube', + interpolated='interpolatedDataCube', + nm=201, + dm=0.025, + nt=1001, + dt=0.004, + nhi=161, + a1=a1, + a2=a2, + rect1=rect1, + rect2=rect2) + +# Do the PEF interpolation one more time +# to increase the CMP sampling +pef('interpolatedDataCube', + 'interpolatedDataCube2', + nm=402, + dm=0.0125, + nt=1001, + dt=0.004, + nhi=161, + a1=a1, + a2=a2, + rect1=rect1, + rect2=rect2) # It uses Very Fast Simulated Aneeling and non hyperbolic CRS # to get zero offset CRS parameters (RN, RNIP and BETA) from data cube @@ -34,7 +99,7 @@ nt0 = 331 om0 = 2 dm0 = 0.025 nm0 = 108 -dataCube='multiLayerDataCube' +dataCube='interpolatedDataCube2' for i in range(nm0): From 44d8eb9d97b811fea7748249ee7947003772587f Mon Sep 17 00:00:00 2001 From: Rodolfo Dirack Date: Sat, 12 Sep 2020 19:42:01 -0300 Subject: [PATCH 05/17] Remove old recipes Resolve #43 Because those recipes are available in Madagascar package it is no longer require to store a copy of then in this repository --- .../cds/madagascarRecipes/LICENSE | 674 ------------------ .../cds/madagascarRecipes/README.md | 2 - .../cds/madagascarRecipes/__init__.py | 0 .../cds/madagascarRecipes/errorReport.py | 54 -- .../cds/madagascarRecipes/generateSelfdoc | 27 - .../cds/madagascarRecipes/kimodel.py | 187 ----- .../cds/madagascarRecipes/pefInterpolation.py | 156 ---- .../cds/madagascarRecipes/plot.py | 52 -- .../cds/madagascarRecipes/velocityAnalisys.py | 100 --- .../cre/madagascarRecipes/LICENSE | 674 ------------------ .../cre/madagascarRecipes/README.md | 2 - .../cre/madagascarRecipes/__init__.py | 0 .../cre/madagascarRecipes/errorReport.py | 54 -- .../cre/madagascarRecipes/generateSelfdoc | 27 - .../cre/madagascarRecipes/kimodel.py | 187 ----- .../cre/madagascarRecipes/pefInterpolation.py | 156 ---- .../cre/madagascarRecipes/plot.py | 52 -- .../cre/madagascarRecipes/velocityAnalisys.py | 100 --- 18 files changed, 2504 deletions(-) delete mode 100644 experiments/multiLayerModel/cds/madagascarRecipes/LICENSE delete mode 100644 experiments/multiLayerModel/cds/madagascarRecipes/README.md delete mode 100644 experiments/multiLayerModel/cds/madagascarRecipes/__init__.py delete mode 100644 experiments/multiLayerModel/cds/madagascarRecipes/errorReport.py delete mode 100644 experiments/multiLayerModel/cds/madagascarRecipes/generateSelfdoc delete mode 100644 experiments/multiLayerModel/cds/madagascarRecipes/kimodel.py delete mode 100644 experiments/multiLayerModel/cds/madagascarRecipes/pefInterpolation.py delete mode 100644 experiments/multiLayerModel/cds/madagascarRecipes/plot.py delete mode 100644 experiments/multiLayerModel/cds/madagascarRecipes/velocityAnalisys.py delete mode 100644 experiments/multiLayerModel/cre/madagascarRecipes/LICENSE delete mode 100644 experiments/multiLayerModel/cre/madagascarRecipes/README.md delete mode 100644 experiments/multiLayerModel/cre/madagascarRecipes/__init__.py delete mode 100644 experiments/multiLayerModel/cre/madagascarRecipes/errorReport.py delete mode 100644 experiments/multiLayerModel/cre/madagascarRecipes/generateSelfdoc delete mode 100644 experiments/multiLayerModel/cre/madagascarRecipes/kimodel.py delete mode 100644 experiments/multiLayerModel/cre/madagascarRecipes/pefInterpolation.py delete mode 100644 experiments/multiLayerModel/cre/madagascarRecipes/plot.py delete mode 100644 experiments/multiLayerModel/cre/madagascarRecipes/velocityAnalisys.py diff --git a/experiments/multiLayerModel/cds/madagascarRecipes/LICENSE b/experiments/multiLayerModel/cds/madagascarRecipes/LICENSE deleted file mode 100644 index f288702..0000000 --- a/experiments/multiLayerModel/cds/madagascarRecipes/LICENSE +++ /dev/null @@ -1,674 +0,0 @@ - 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But first, please read -. diff --git a/experiments/multiLayerModel/cds/madagascarRecipes/README.md b/experiments/multiLayerModel/cds/madagascarRecipes/README.md deleted file mode 100644 index 9448f2b..0000000 --- a/experiments/multiLayerModel/cds/madagascarRecipes/README.md +++ /dev/null @@ -1,2 +0,0 @@ -# madagascarRecipes -Personal library of Madagascar recipes diff --git a/experiments/multiLayerModel/cds/madagascarRecipes/__init__.py b/experiments/multiLayerModel/cds/madagascarRecipes/__init__.py deleted file mode 100644 index e69de29..0000000 diff --git a/experiments/multiLayerModel/cds/madagascarRecipes/errorReport.py b/experiments/multiLayerModel/cds/madagascarRecipes/errorReport.py deleted file mode 100644 index 8509563..0000000 --- a/experiments/multiLayerModel/cds/madagascarRecipes/errorReport.py +++ /dev/null @@ -1,54 +0,0 @@ -#!/usr/bin/env python -# -*- coding: utf-8 -*- -# -# errorReport.py (Madagascar Recipe) -# -# Purpose: SCons error report function. -# -# Important!: It should be called from a SConstruct -# -# Site: http://www.dirackslounge.online -# -# Version 1.0 -# -# Programer: Rodolfo A. C. Neves (Dirack) 01/06/2020 -# -# Email: rodolfo_profissional@hotmail.com -# -# License: GPL-3.0 . - -# Selfdoc string -''' -Python function to report errors in SCons - -If build fail report specific message. Import this module and add the following lineis to your SConstruct: - -import atexit -from madagascarRecipes.errorReport import print_build_failures - -Call error message by the following: - -atexit.register(print_build_failures,message) - -It will call function print_build_failures to report message variable that should be a string with the error message to be reported -''' - -if __name__ == "__main__": - print(__doc__) - exit() - -__author__="Rodolfo Dirack " -__version__="1.0" - -def print_build_failures(message): - ''' - Print error message when build fail - :param message: string, error message - ''' - from SCons.Script import GetBuildFailures - for bf in GetBuildFailures(): - print("BUILD ERROR REPORT".center(40,'*')) - print("FAILED BUILD: %s" % (bf.node)) - print("MESSAGE REPORT".center(40,'*')) - print("%s" % (message)) - diff --git a/experiments/multiLayerModel/cds/madagascarRecipes/generateSelfdoc b/experiments/multiLayerModel/cds/madagascarRecipes/generateSelfdoc deleted file mode 100644 index 4f98839..0000000 --- a/experiments/multiLayerModel/cds/madagascarRecipes/generateSelfdoc +++ /dev/null @@ -1,27 +0,0 @@ -#!/usr/bin/env python -# -*- coding: utf-8 -*- -# -# generateSelfdoc (SConscript) -# -# Purpose: Generate selfdoc for Madagascar recipes using pydoc. -# -# Important!: It should be called from 'scons' with the command -# 'scons -f generateSelfdoc' -# -# Site: http://www.dirackslounge.online -# -# Version 1.0 -# -# Programer: Rodolfo A. C. Neves (Dirack) 04/03/2020 -# -# Email: rodolfo_profissional@hotmail.com -# -# License: GPL-3.0 . - -import pydoc - -RECIPES=['kimodel', - 'pefInterpolation'] - -for i in RECIPES: - pydoc.writedoc(i) diff --git a/experiments/multiLayerModel/cds/madagascarRecipes/kimodel.py b/experiments/multiLayerModel/cds/madagascarRecipes/kimodel.py deleted file mode 100644 index 177b625..0000000 --- a/experiments/multiLayerModel/cds/madagascarRecipes/kimodel.py +++ /dev/null @@ -1,187 +0,0 @@ -#!/usr/bin/env python -# -*- coding: utf-8 -*- -# -# kimodel.py (Madagascar Recipe) -# -# Purpose: Recipe to Kirchhoff modeling. -# -# Important!: It should be called from a SConstruct -# -# Site: http://www.dirackslounge.online -# -# Version 1.0 -# -# Programer: Rodolfo A. C. Neves (Dirack) 04/03/2020 -# -# Email: rodolfo_profissional@hotmail.com -# -# License: GPL-3.0 . - -# Selfdoc string -''' -Madagascar recipe to Kirchhoff modeling - -Define functions to generate subsurface models, apply Kirchhoff modeling -and Kirchhoff Newton modeling. -''' - -if __name__ == "__main__": - print(__doc__) - exit() - -# Madagascar package -from rsf.proj import * - -__author__="Rodolfo Dirack " -__version__="1.0" - -def arr2str(array,sep=' '): - ''' - Convert a tuple into a comma separeted string - ''' - return string.join(map(str,array),sep) - - -def multiLayerModel( - interfaces, - dipsfile, - modelfile, - xmax, - zmax, - layers, - velocities - ): - ''' - - Generate a multi layer model to use in the program sfkirmod_newton - - :out interfaces: RSF filename, interpolated interfaces file - :out dipsfile: RSF filename, dips of interfaces - :out modelfile: RSF filename, model for ploting - :param xmax: interger, max x axis model distance - :param zmax: interger, max z axis model depth - :param layers: tuple array, points describing interfaces - :param velocities: tuple, layers velocities in Km/s - ''' - vstr=arr2str(velocities,',') - - n1 = len(layers[0]) - n2 = len(layers) - - Flow('layers.asc',None, - ''' - echo %s - n1=%d n2=%d o1=0 d1=%g - data_format=ascii_float in=$TARGET - ''' % (string.join(map(arr2str,layers),' '), - n1,n2,xmax/(n1-1))) - Flow('layers','layers.asc','dd form=native') - - d = 0.0101 # non-round for reproducibility - - Flow(interfaces,'layers', - 'spline o1=0 d1=%g n1=%d' % (d,int(1.5+xmax/d))) - Flow(dipsfile,interfaces,'deriv scale=y') - - Flow(modelfile,interfaces, - ''' - unif2 d1=%g n1=%d v00=%s - ''' % (d,int(1.5+zmax/d),vstr)) - -def kirchoffNewtonModeling( - reflectors, - reflectorsDip, - filename, - velocities): - ''' - Kirchhoff modeling for a multi layer model - ''' - vstr=arr2str(velocities,',') - - # Kirchoff modeling for multi layer model - Flow(filename,[reflectors,reflectorsDip], - ''' - kirmod_newton nt=1001 dt=0.004 freq=10 - ns=201 ds=0.025 nh=161 dh=0.025 h0=0 s0=0 verb=y cmp=y - vstatus=0 velocity=%s debug=n fwdxini=y - xref=0 zref=0 dip=${SOURCES[1]} | - put d2=0.0125 label3="CMP" unit3="Km" label2="Offset" unit2="Km" label1=Time unit1=s - ''' % (vstr)) - -def gaussianReflector(filename='gaussianReflector'): - ''' - - Generate a gaussian reflector to use in the program sfkirmod - - :param filename: RSF filename, gaussian reflector file - ''' - - # Modeling: Gaussian reflector in a velocity linear model - # velocity increases with depth with a 0.5 velocity gradient - Flow('gaussianReflector',None, - ''' - math d1=0.01 n1=2001 o1=-5 unit1=km label1=Offset - output="4-3*exp(-(x1-5)^2/9)" - ''') - - # Velocity Model - Flow('velocityModel','gaussianReflector', - ''' - window min1=0 max1=10 | - spray axis=1 n=451 d=0.01 o=0 label=Depth unit=km | - math output="1.5+0.5*x1+0.0*x2" - ''') - - Flow('reflectorDip','gaussianReflector','math output="2/3*(x1-5)*input" ') - - -def kirchoffModeling( - filename, - reflector, - reflectorDip, - nh, - dh, - h0, - ns, - ds, - s0, - freq, - dt, - nt, - v0, - gradz - ): - ''' - - Kirchhoff modeling function. Generate (time,cmp,offset) datacube for - a given v(z) model (Velocity increases with depth). - - :out filename: RSF filename, Modeled data cube - :param reflector: RSF filename, interfaces file - :param reflectorDip: RSF filename, interfaces dips file - :param nh: integer, number of offsets - :param dh: float, offset sampling - :param h0: float, first offset - :param ns: integer, number of shots/cmps - :param ds: float, shots/cmps sampling - :param s0: float, first shot/cmp position - :param freq: integer, ricker pulse frequency - :param dt: float, time sampling - :param nt: float, number of time samples - :param v0: float, near surface velocity - :param gradz: float, velocity gradient - ''' - - halfOffset = dh/2. - - # Kirchoff Modeling - Flow(filename,[reflector, reflectorDip], - ''' - kirmod cmp=y dip=${SOURCES[1]} - nh=%i dh=%g h0=%g - ns=%i ds=%g s0=%g - freq=%i dt=%g nt=%i - vel=%g gradz=%g gradx=0.0 verb=y | - put d2=%g label3="CMP" unit3="Km" label2="Offset" unit2="Km" label1=Time unit1=s - ''' % (nh,dh,h0,ns,ds,s0,freq,dt,nt,v0,gradz,halfOffset)) - diff --git a/experiments/multiLayerModel/cds/madagascarRecipes/pefInterpolation.py b/experiments/multiLayerModel/cds/madagascarRecipes/pefInterpolation.py deleted file mode 100644 index 495b635..0000000 --- a/experiments/multiLayerModel/cds/madagascarRecipes/pefInterpolation.py +++ /dev/null @@ -1,156 +0,0 @@ -#!/usr/bin/env python -# -*- coding: utf-8 -*- -# -# pefInterpolation.py (Madagascar Recipe) -# -# Purpose: Recipe to Preditive Adaptative Error Filters (PEF) interpolation -# to double CMP number of samples. -# -# Important!: It should be called from a SConstruct -# -# Site: http://www.dirackslounge.online -# -# Version 1.0 -# -# Programer: Rodolfo A. C. Neves (Dirack) 04/03/2020 -# -# Email: rodolfo_profissional@hotmail.com -# -# License: GPL-3.0 . - -# Selfdoc string -''' -Madagascar recipe to PEF interpolation - -Interpolate and increase CMP sampling using Preditive Adaptative Error Filters (PEF) interpolation. -''' - -if __name__ == "__main__": - print(__doc__) - exit() - -__author__="Rodolfo Dirack " -__version__="1.0" - -# Madagascar package -from rsf.proj import * - -def pefInterpolation( - dataCube, - interpolated, - nm, - dm, - nt, - dt, - nhi, - a1, - a2, - rect1, - rect2 - ): - ''' - - PEF interpolation to double CMP sampling of the data cube - - :param dataCube: RSF filename, Seismic data cube to interpolate - :param interpolated: RSF filename, Interpolated seismic data cube - :param nm: integer, number of CMPs in the seismic data cube - :param dm: float, CMP sampling - :param nt: integer, number of time samples - :param dt: float, time sampling - :param nhi: integer, number of constant offsets gathers to interpolate - :param a1: integer, Number of PEF coeficients in time axis - :param a2: integer, Number of PEF coeficients in space axis - :param rect1: integer, Smooth radius in time - :param rect2: integer, Smooth radius in space - ''' - - # Divide CMP sampling - dm = dm/2 - - # Define mask file names using input filename - mask1 = dataCube+'-mask1' - mask = dataCube+'-mask' - aa = dataCube+'-aa' - bb = dataCube+'-bb' - a = dataCube+'-a' - b = dataCube+'-b' - zeroTraceGather = dataCube+'-zeroedGather' - mask0 = dataCube+'-mask0' - - - # Build a mask to interleave zero traces with original data traces - Flow(aa,None,'spike n1=%i d1=%g o1=0' %(nm,dm)) - Flow(bb,None,'spike n1=%i d1=%g o1=0 mag=0' % (nm,dm)) - Flow(mask1,[bb, aa], - ''' - interleave axis=1 ${SOURCES[1]} | - dd type=int - ''') - - Flow(a,None,'spike n1=%i d1=%g o1=0' % (nm,dm)) - Flow(b,None,'spike n1=%i d1=%g o1=0 mag=0' % (nm,dm)) - Flow(mask,[a, b], - ''' - interleave axis=1 ${SOURCES[1]} | - dd type=int - ''') - Flow(zeroTraceGather,b, - ''' - spray axis=2 n=%i d=%g | - transp | - put label2=Offset unit2=Km label1=Time unit1=s - ''' %(nt,dm)) - - # Data Mask with double of traces in CMP (half of CMP sampling) - # Keep the same Time and Offset original data sampling - Flow(mask0,mask, - ''' - spray axis=1 n=%i d=%g - ''' %(nt,dt)) - - totalPefIterations = 100 - totalInterpolationIterations = 50 - - offsetGathers = [] - for offsetGatherIndex in range(nhi): - - offsetGather = dataCube+"-offsetGather-%i" % offsetGatherIndex - resampledOffsetGather = dataCube+"-resampledGather-%i" % offsetGatherIndex - interpolatedOffsetGather = dataCube+"-interpolatedGather-%i" % offsetGatherIndex - pefCoeficients = dataCube+"-pefCoeficients-%i" % offsetGatherIndex - - Flow(offsetGather,dataCube, - ''' - window n2=1 f2=%i - ''' % (offsetGatherIndex)) - - Flow(resampledOffsetGather,[offsetGather,zeroTraceGather], - ''' - interleave axis=2 ${SOURCES[1]} - ''') - - # Calculate adaptive PEF coeficients - Flow(pefCoeficients,[resampledOffsetGather,mask0], - ''' - apef jump=2 a=%i,%i rect1=%i rect2=%i niter=%g verb=y - maskin=${SOURCES[1]} - ''' % (a1,a2,rect1,rect2,totalPefIterations)) - - # Interpolation - Flow(interpolatedOffsetGather, [resampledOffsetGather,pefCoeficients,mask0,mask1], - ''' - miss4 exact=y filt=${SOURCES[1]} mask=${SOURCES[2]} niter=%g verb=y | - put d2=%g - ''' % (totalInterpolationIterations,dm)) - - offsetGathers.append(interpolatedOffsetGather) - - # Concatenate interpolated sections - Flow(interpolated,offsetGathers, - ''' - rcat axis=3 ${SOURCES[1:%d]} | - transp plane=23 - ''' % nhi) - - diff --git a/experiments/multiLayerModel/cds/madagascarRecipes/plot.py b/experiments/multiLayerModel/cds/madagascarRecipes/plot.py deleted file mode 100644 index 3715a31..0000000 --- a/experiments/multiLayerModel/cds/madagascarRecipes/plot.py +++ /dev/null @@ -1,52 +0,0 @@ -#!/usr/bin/env python -# -*- coding: utf-8 -*- -# -# plot.py (Madagascar Recipe) -# -# Purpose: Recipe to generate plot files (VPL). -# -# Important!: It should be called from a SConstruct -# -# Site: http://www.dirackslounge.online -# -# Version 1.0 -# -# Programer: Rodolfo A. C. Neves (Dirack) 04/03/2020 -# -# Email: rodolfo_profissional@hotmail.com -# -# License: GPL-3.0 . - -# Selfdoc string -''' -Madagascar recipe to plot - -Define functions to generate vpl files. -''' - -if __name__ == "__main__": - print(__doc__) - exit() - -# Madagascar package -from rsf.proj import * - -__author__="Rodolfo Dirack " -__version__="1.0" - -def velplot(title,label1='Depth',unit1='Km'): - ''' - Velocity ploting function - :param title: RSF filename, velocity file - :param label1: string, first axis label - :param unit1: string, first axis unit - ''' - - return ''' - grey color=j allpos=y title="%s" scalebar=y - barlabel=Velocity barunit=Km/s - label1="%s" unit1="%s" label2=Lateral unit2=Km - barreverse=y pclip=100 bias=2.8 - ''' % (title,label1,unit1) - - diff --git a/experiments/multiLayerModel/cds/madagascarRecipes/velocityAnalisys.py b/experiments/multiLayerModel/cds/madagascarRecipes/velocityAnalisys.py deleted file mode 100644 index 96a5826..0000000 --- a/experiments/multiLayerModel/cds/madagascarRecipes/velocityAnalisys.py +++ /dev/null @@ -1,100 +0,0 @@ -#!/usr/bin/env python -# -*- coding: utf-8 -*- -# -# velocityAnalisys.py () -# -# Purpose: Madagascar recipe to do velocity analisys. -# -# Site: https://dirack.github.io -# -# Version 1.0 -# -# Programer: Rodolfo A C Neves (Dirack) 01/04/2020 -# -# Email: rodolfo_profissional@hotmail.com -# -# License: GPL-3.0 . - -from rsf.proj import * -import math - -# Selfdoc string -''' -Madagascar recipe to Velocity analisys with automatic velocity scan and picking - -Define functions to do a velocity analisys of a (time,offset,CMP) datacube. -''' - -if __name__ == "__main__": - print(__doc__) - exit() - -# Madagascar package -from rsf.proj import * - -__author__="Rodolfo Dirack " -__version__="1.0" - -def velocityAnalisys( - dataCube, - pick, - nmo, - vrms, - v0, - dv, - nv, - vel0, - rect1=15, - rect2=40, - rect3=3, - dt=0.004) - ''' - Velocity analisys and automatic picking and semblance - :param datacube: RSF filename, (time, offset, CMP) datacube - :out pick: RSF filename, picking velocity - :out stack: RSF filename, stacked section - :out vrms: RSF filename, vrms velocity - :param dt: float, time sampling - :param v0: float, inicial scan velocity - :param dv: float, scan velocity sampling - :param nv: int, number of scan velocities - :param vel0: float, initial velocity picking - :param rect1: int, smooth time radius to velocity scan - :param rect2: int, smooth space radius to velocity scan - :param rect3: int, smooth time radius post picking - ''' - - scan = 'scan'+dataCube - nmo = 'nmo'+dataCube - - # Velocity scan - Flow(scan,[dataCube], - ''' - vscan semblance=y - v0=%g dv=%g nv=%d - ''' % (v0,dv,nv)) - - # Velocity picking - Flow(pick,scan, - ''' - pick rect1=%i rect2=%i vel0=%g smooth=y | - smooth rect1=%i - ''' %(rect1,rect2,vel0,rect3)) - - # NMO and stack - Flow(nmo,[dataCube,pick], - 'nmo half=n velocity=${SOURCES[1]}') - - Flow(stack,nmo,'stack') - - # generate RMS velocity : - # sfmul multiply input data by itself to make v**2 - # sfcausint integrate v**2 (this does not include scaling by dt) - # sfmath scale by dt and divide by t - Flow(vrms,pick, - ''' - sfmul $SOURCE | - sfcausint | - sfmath output="sqrt(input*%g/(x1+%g))" | - sfput n3=1 d3=1 o3=0 - '''%(dt,dt)) diff --git a/experiments/multiLayerModel/cre/madagascarRecipes/LICENSE b/experiments/multiLayerModel/cre/madagascarRecipes/LICENSE deleted file mode 100644 index f288702..0000000 --- a/experiments/multiLayerModel/cre/madagascarRecipes/LICENSE +++ /dev/null @@ -1,674 +0,0 @@ - GNU GENERAL PUBLIC LICENSE - Version 3, 29 June 2007 - - Copyright (C) 2007 Free Software Foundation, Inc. - Everyone is permitted to copy and distribute verbatim copies - of this license document, but changing it is not allowed. - - Preamble - - The GNU General Public License is a free, copyleft license for -software and other kinds of works. - - The licenses for most software and other practical works are designed -to take away your freedom to share and change the works. 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But first, please read -. diff --git a/experiments/multiLayerModel/cre/madagascarRecipes/README.md b/experiments/multiLayerModel/cre/madagascarRecipes/README.md deleted file mode 100644 index 9448f2b..0000000 --- a/experiments/multiLayerModel/cre/madagascarRecipes/README.md +++ /dev/null @@ -1,2 +0,0 @@ -# madagascarRecipes -Personal library of Madagascar recipes diff --git a/experiments/multiLayerModel/cre/madagascarRecipes/__init__.py b/experiments/multiLayerModel/cre/madagascarRecipes/__init__.py deleted file mode 100644 index e69de29..0000000 diff --git a/experiments/multiLayerModel/cre/madagascarRecipes/errorReport.py b/experiments/multiLayerModel/cre/madagascarRecipes/errorReport.py deleted file mode 100644 index 8509563..0000000 --- a/experiments/multiLayerModel/cre/madagascarRecipes/errorReport.py +++ /dev/null @@ -1,54 +0,0 @@ -#!/usr/bin/env python -# -*- coding: utf-8 -*- -# -# errorReport.py (Madagascar Recipe) -# -# Purpose: SCons error report function. -# -# Important!: It should be called from a SConstruct -# -# Site: http://www.dirackslounge.online -# -# Version 1.0 -# -# Programer: Rodolfo A. C. Neves (Dirack) 01/06/2020 -# -# Email: rodolfo_profissional@hotmail.com -# -# License: GPL-3.0 . - -# Selfdoc string -''' -Python function to report errors in SCons - -If build fail report specific message. Import this module and add the following lineis to your SConstruct: - -import atexit -from madagascarRecipes.errorReport import print_build_failures - -Call error message by the following: - -atexit.register(print_build_failures,message) - -It will call function print_build_failures to report message variable that should be a string with the error message to be reported -''' - -if __name__ == "__main__": - print(__doc__) - exit() - -__author__="Rodolfo Dirack " -__version__="1.0" - -def print_build_failures(message): - ''' - Print error message when build fail - :param message: string, error message - ''' - from SCons.Script import GetBuildFailures - for bf in GetBuildFailures(): - print("BUILD ERROR REPORT".center(40,'*')) - print("FAILED BUILD: %s" % (bf.node)) - print("MESSAGE REPORT".center(40,'*')) - print("%s" % (message)) - diff --git a/experiments/multiLayerModel/cre/madagascarRecipes/generateSelfdoc b/experiments/multiLayerModel/cre/madagascarRecipes/generateSelfdoc deleted file mode 100644 index 4f98839..0000000 --- a/experiments/multiLayerModel/cre/madagascarRecipes/generateSelfdoc +++ /dev/null @@ -1,27 +0,0 @@ -#!/usr/bin/env python -# -*- coding: utf-8 -*- -# -# generateSelfdoc (SConscript) -# -# Purpose: Generate selfdoc for Madagascar recipes using pydoc. -# -# Important!: It should be called from 'scons' with the command -# 'scons -f generateSelfdoc' -# -# Site: http://www.dirackslounge.online -# -# Version 1.0 -# -# Programer: Rodolfo A. C. Neves (Dirack) 04/03/2020 -# -# Email: rodolfo_profissional@hotmail.com -# -# License: GPL-3.0 . - -import pydoc - -RECIPES=['kimodel', - 'pefInterpolation'] - -for i in RECIPES: - pydoc.writedoc(i) diff --git a/experiments/multiLayerModel/cre/madagascarRecipes/kimodel.py b/experiments/multiLayerModel/cre/madagascarRecipes/kimodel.py deleted file mode 100644 index 177b625..0000000 --- a/experiments/multiLayerModel/cre/madagascarRecipes/kimodel.py +++ /dev/null @@ -1,187 +0,0 @@ -#!/usr/bin/env python -# -*- coding: utf-8 -*- -# -# kimodel.py (Madagascar Recipe) -# -# Purpose: Recipe to Kirchhoff modeling. -# -# Important!: It should be called from a SConstruct -# -# Site: http://www.dirackslounge.online -# -# Version 1.0 -# -# Programer: Rodolfo A. C. Neves (Dirack) 04/03/2020 -# -# Email: rodolfo_profissional@hotmail.com -# -# License: GPL-3.0 . - -# Selfdoc string -''' -Madagascar recipe to Kirchhoff modeling - -Define functions to generate subsurface models, apply Kirchhoff modeling -and Kirchhoff Newton modeling. -''' - -if __name__ == "__main__": - print(__doc__) - exit() - -# Madagascar package -from rsf.proj import * - -__author__="Rodolfo Dirack " -__version__="1.0" - -def arr2str(array,sep=' '): - ''' - Convert a tuple into a comma separeted string - ''' - return string.join(map(str,array),sep) - - -def multiLayerModel( - interfaces, - dipsfile, - modelfile, - xmax, - zmax, - layers, - velocities - ): - ''' - - Generate a multi layer model to use in the program sfkirmod_newton - - :out interfaces: RSF filename, interpolated interfaces file - :out dipsfile: RSF filename, dips of interfaces - :out modelfile: RSF filename, model for ploting - :param xmax: interger, max x axis model distance - :param zmax: interger, max z axis model depth - :param layers: tuple array, points describing interfaces - :param velocities: tuple, layers velocities in Km/s - ''' - vstr=arr2str(velocities,',') - - n1 = len(layers[0]) - n2 = len(layers) - - Flow('layers.asc',None, - ''' - echo %s - n1=%d n2=%d o1=0 d1=%g - data_format=ascii_float in=$TARGET - ''' % (string.join(map(arr2str,layers),' '), - n1,n2,xmax/(n1-1))) - Flow('layers','layers.asc','dd form=native') - - d = 0.0101 # non-round for reproducibility - - Flow(interfaces,'layers', - 'spline o1=0 d1=%g n1=%d' % (d,int(1.5+xmax/d))) - Flow(dipsfile,interfaces,'deriv scale=y') - - Flow(modelfile,interfaces, - ''' - unif2 d1=%g n1=%d v00=%s - ''' % (d,int(1.5+zmax/d),vstr)) - -def kirchoffNewtonModeling( - reflectors, - reflectorsDip, - filename, - velocities): - ''' - Kirchhoff modeling for a multi layer model - ''' - vstr=arr2str(velocities,',') - - # Kirchoff modeling for multi layer model - Flow(filename,[reflectors,reflectorsDip], - ''' - kirmod_newton nt=1001 dt=0.004 freq=10 - ns=201 ds=0.025 nh=161 dh=0.025 h0=0 s0=0 verb=y cmp=y - vstatus=0 velocity=%s debug=n fwdxini=y - xref=0 zref=0 dip=${SOURCES[1]} | - put d2=0.0125 label3="CMP" unit3="Km" label2="Offset" unit2="Km" label1=Time unit1=s - ''' % (vstr)) - -def gaussianReflector(filename='gaussianReflector'): - ''' - - Generate a gaussian reflector to use in the program sfkirmod - - :param filename: RSF filename, gaussian reflector file - ''' - - # Modeling: Gaussian reflector in a velocity linear model - # velocity increases with depth with a 0.5 velocity gradient - Flow('gaussianReflector',None, - ''' - math d1=0.01 n1=2001 o1=-5 unit1=km label1=Offset - output="4-3*exp(-(x1-5)^2/9)" - ''') - - # Velocity Model - Flow('velocityModel','gaussianReflector', - ''' - window min1=0 max1=10 | - spray axis=1 n=451 d=0.01 o=0 label=Depth unit=km | - math output="1.5+0.5*x1+0.0*x2" - ''') - - Flow('reflectorDip','gaussianReflector','math output="2/3*(x1-5)*input" ') - - -def kirchoffModeling( - filename, - reflector, - reflectorDip, - nh, - dh, - h0, - ns, - ds, - s0, - freq, - dt, - nt, - v0, - gradz - ): - ''' - - Kirchhoff modeling function. Generate (time,cmp,offset) datacube for - a given v(z) model (Velocity increases with depth). - - :out filename: RSF filename, Modeled data cube - :param reflector: RSF filename, interfaces file - :param reflectorDip: RSF filename, interfaces dips file - :param nh: integer, number of offsets - :param dh: float, offset sampling - :param h0: float, first offset - :param ns: integer, number of shots/cmps - :param ds: float, shots/cmps sampling - :param s0: float, first shot/cmp position - :param freq: integer, ricker pulse frequency - :param dt: float, time sampling - :param nt: float, number of time samples - :param v0: float, near surface velocity - :param gradz: float, velocity gradient - ''' - - halfOffset = dh/2. - - # Kirchoff Modeling - Flow(filename,[reflector, reflectorDip], - ''' - kirmod cmp=y dip=${SOURCES[1]} - nh=%i dh=%g h0=%g - ns=%i ds=%g s0=%g - freq=%i dt=%g nt=%i - vel=%g gradz=%g gradx=0.0 verb=y | - put d2=%g label3="CMP" unit3="Km" label2="Offset" unit2="Km" label1=Time unit1=s - ''' % (nh,dh,h0,ns,ds,s0,freq,dt,nt,v0,gradz,halfOffset)) - diff --git a/experiments/multiLayerModel/cre/madagascarRecipes/pefInterpolation.py b/experiments/multiLayerModel/cre/madagascarRecipes/pefInterpolation.py deleted file mode 100644 index 495b635..0000000 --- a/experiments/multiLayerModel/cre/madagascarRecipes/pefInterpolation.py +++ /dev/null @@ -1,156 +0,0 @@ -#!/usr/bin/env python -# -*- coding: utf-8 -*- -# -# pefInterpolation.py (Madagascar Recipe) -# -# Purpose: Recipe to Preditive Adaptative Error Filters (PEF) interpolation -# to double CMP number of samples. -# -# Important!: It should be called from a SConstruct -# -# Site: http://www.dirackslounge.online -# -# Version 1.0 -# -# Programer: Rodolfo A. C. Neves (Dirack) 04/03/2020 -# -# Email: rodolfo_profissional@hotmail.com -# -# License: GPL-3.0 . - -# Selfdoc string -''' -Madagascar recipe to PEF interpolation - -Interpolate and increase CMP sampling using Preditive Adaptative Error Filters (PEF) interpolation. -''' - -if __name__ == "__main__": - print(__doc__) - exit() - -__author__="Rodolfo Dirack " -__version__="1.0" - -# Madagascar package -from rsf.proj import * - -def pefInterpolation( - dataCube, - interpolated, - nm, - dm, - nt, - dt, - nhi, - a1, - a2, - rect1, - rect2 - ): - ''' - - PEF interpolation to double CMP sampling of the data cube - - :param dataCube: RSF filename, Seismic data cube to interpolate - :param interpolated: RSF filename, Interpolated seismic data cube - :param nm: integer, number of CMPs in the seismic data cube - :param dm: float, CMP sampling - :param nt: integer, number of time samples - :param dt: float, time sampling - :param nhi: integer, number of constant offsets gathers to interpolate - :param a1: integer, Number of PEF coeficients in time axis - :param a2: integer, Number of PEF coeficients in space axis - :param rect1: integer, Smooth radius in time - :param rect2: integer, Smooth radius in space - ''' - - # Divide CMP sampling - dm = dm/2 - - # Define mask file names using input filename - mask1 = dataCube+'-mask1' - mask = dataCube+'-mask' - aa = dataCube+'-aa' - bb = dataCube+'-bb' - a = dataCube+'-a' - b = dataCube+'-b' - zeroTraceGather = dataCube+'-zeroedGather' - mask0 = dataCube+'-mask0' - - - # Build a mask to interleave zero traces with original data traces - Flow(aa,None,'spike n1=%i d1=%g o1=0' %(nm,dm)) - Flow(bb,None,'spike n1=%i d1=%g o1=0 mag=0' % (nm,dm)) - Flow(mask1,[bb, aa], - ''' - interleave axis=1 ${SOURCES[1]} | - dd type=int - ''') - - Flow(a,None,'spike n1=%i d1=%g o1=0' % (nm,dm)) - Flow(b,None,'spike n1=%i d1=%g o1=0 mag=0' % (nm,dm)) - Flow(mask,[a, b], - ''' - interleave axis=1 ${SOURCES[1]} | - dd type=int - ''') - Flow(zeroTraceGather,b, - ''' - spray axis=2 n=%i d=%g | - transp | - put label2=Offset unit2=Km label1=Time unit1=s - ''' %(nt,dm)) - - # Data Mask with double of traces in CMP (half of CMP sampling) - # Keep the same Time and Offset original data sampling - Flow(mask0,mask, - ''' - spray axis=1 n=%i d=%g - ''' %(nt,dt)) - - totalPefIterations = 100 - totalInterpolationIterations = 50 - - offsetGathers = [] - for offsetGatherIndex in range(nhi): - - offsetGather = dataCube+"-offsetGather-%i" % offsetGatherIndex - resampledOffsetGather = dataCube+"-resampledGather-%i" % offsetGatherIndex - interpolatedOffsetGather = dataCube+"-interpolatedGather-%i" % offsetGatherIndex - pefCoeficients = dataCube+"-pefCoeficients-%i" % offsetGatherIndex - - Flow(offsetGather,dataCube, - ''' - window n2=1 f2=%i - ''' % (offsetGatherIndex)) - - Flow(resampledOffsetGather,[offsetGather,zeroTraceGather], - ''' - interleave axis=2 ${SOURCES[1]} - ''') - - # Calculate adaptive PEF coeficients - Flow(pefCoeficients,[resampledOffsetGather,mask0], - ''' - apef jump=2 a=%i,%i rect1=%i rect2=%i niter=%g verb=y - maskin=${SOURCES[1]} - ''' % (a1,a2,rect1,rect2,totalPefIterations)) - - # Interpolation - Flow(interpolatedOffsetGather, [resampledOffsetGather,pefCoeficients,mask0,mask1], - ''' - miss4 exact=y filt=${SOURCES[1]} mask=${SOURCES[2]} niter=%g verb=y | - put d2=%g - ''' % (totalInterpolationIterations,dm)) - - offsetGathers.append(interpolatedOffsetGather) - - # Concatenate interpolated sections - Flow(interpolated,offsetGathers, - ''' - rcat axis=3 ${SOURCES[1:%d]} | - transp plane=23 - ''' % nhi) - - diff --git a/experiments/multiLayerModel/cre/madagascarRecipes/plot.py b/experiments/multiLayerModel/cre/madagascarRecipes/plot.py deleted file mode 100644 index 3715a31..0000000 --- a/experiments/multiLayerModel/cre/madagascarRecipes/plot.py +++ /dev/null @@ -1,52 +0,0 @@ -#!/usr/bin/env python -# -*- coding: utf-8 -*- -# -# plot.py (Madagascar Recipe) -# -# Purpose: Recipe to generate plot files (VPL). -# -# Important!: It should be called from a SConstruct -# -# Site: http://www.dirackslounge.online -# -# Version 1.0 -# -# Programer: Rodolfo A. C. Neves (Dirack) 04/03/2020 -# -# Email: rodolfo_profissional@hotmail.com -# -# License: GPL-3.0 . - -# Selfdoc string -''' -Madagascar recipe to plot - -Define functions to generate vpl files. -''' - -if __name__ == "__main__": - print(__doc__) - exit() - -# Madagascar package -from rsf.proj import * - -__author__="Rodolfo Dirack " -__version__="1.0" - -def velplot(title,label1='Depth',unit1='Km'): - ''' - Velocity ploting function - :param title: RSF filename, velocity file - :param label1: string, first axis label - :param unit1: string, first axis unit - ''' - - return ''' - grey color=j allpos=y title="%s" scalebar=y - barlabel=Velocity barunit=Km/s - label1="%s" unit1="%s" label2=Lateral unit2=Km - barreverse=y pclip=100 bias=2.8 - ''' % (title,label1,unit1) - - diff --git a/experiments/multiLayerModel/cre/madagascarRecipes/velocityAnalisys.py b/experiments/multiLayerModel/cre/madagascarRecipes/velocityAnalisys.py deleted file mode 100644 index 96a5826..0000000 --- a/experiments/multiLayerModel/cre/madagascarRecipes/velocityAnalisys.py +++ /dev/null @@ -1,100 +0,0 @@ -#!/usr/bin/env python -# -*- coding: utf-8 -*- -# -# velocityAnalisys.py () -# -# Purpose: Madagascar recipe to do velocity analisys. -# -# Site: https://dirack.github.io -# -# Version 1.0 -# -# Programer: Rodolfo A C Neves (Dirack) 01/04/2020 -# -# Email: rodolfo_profissional@hotmail.com -# -# License: GPL-3.0 . - -from rsf.proj import * -import math - -# Selfdoc string -''' -Madagascar recipe to Velocity analisys with automatic velocity scan and picking - -Define functions to do a velocity analisys of a (time,offset,CMP) datacube. -''' - -if __name__ == "__main__": - print(__doc__) - exit() - -# Madagascar package -from rsf.proj import * - -__author__="Rodolfo Dirack " -__version__="1.0" - -def velocityAnalisys( - dataCube, - pick, - nmo, - vrms, - v0, - dv, - nv, - vel0, - rect1=15, - rect2=40, - rect3=3, - dt=0.004) - ''' - Velocity analisys and automatic picking and semblance - :param datacube: RSF filename, (time, offset, CMP) datacube - :out pick: RSF filename, picking velocity - :out stack: RSF filename, stacked section - :out vrms: RSF filename, vrms velocity - :param dt: float, time sampling - :param v0: float, inicial scan velocity - :param dv: float, scan velocity sampling - :param nv: int, number of scan velocities - :param vel0: float, initial velocity picking - :param rect1: int, smooth time radius to velocity scan - :param rect2: int, smooth space radius to velocity scan - :param rect3: int, smooth time radius post picking - ''' - - scan = 'scan'+dataCube - nmo = 'nmo'+dataCube - - # Velocity scan - Flow(scan,[dataCube], - ''' - vscan semblance=y - v0=%g dv=%g nv=%d - ''' % (v0,dv,nv)) - - # Velocity picking - Flow(pick,scan, - ''' - pick rect1=%i rect2=%i vel0=%g smooth=y | - smooth rect1=%i - ''' %(rect1,rect2,vel0,rect3)) - - # NMO and stack - Flow(nmo,[dataCube,pick], - 'nmo half=n velocity=${SOURCES[1]}') - - Flow(stack,nmo,'stack') - - # generate RMS velocity : - # sfmul multiply input data by itself to make v**2 - # sfcausint integrate v**2 (this does not include scaling by dt) - # sfmath scale by dt and divide by t - Flow(vrms,pick, - ''' - sfmul $SOURCE | - sfcausint | - sfmath output="sqrt(input*%g/(x1+%g))" | - sfput n3=1 d3=1 o3=0 - '''%(dt,dt)) From cc668fd08355dc52710e6e6a765add847b8b43b7 Mon Sep 17 00:00:00 2001 From: Rodolfo Dirack Date: Sat, 12 Sep 2020 19:54:42 -0300 Subject: [PATCH 06/17] Explicit dependencies to multiLayerModel experiment #44 Define explicit dependencies to the experiments in multiLayerModel with Depend method in scons to avoid errors in parallel building, Resolve #44 --- experiments/multiLayerModel/cds/SConstruct | 8 ++++++++ experiments/multiLayerModel/cre/SConstruct | 13 +++++++++++++ 2 files changed, 21 insertions(+) diff --git a/experiments/multiLayerModel/cds/SConstruct b/experiments/multiLayerModel/cds/SConstruct index b4699e2..c539edd 100644 --- a/experiments/multiLayerModel/cds/SConstruct +++ b/experiments/multiLayerModel/cds/SConstruct @@ -31,6 +31,11 @@ from rsf.recipes.pefInterpolation import pefInterpolation as pef from rsf.recipes.kimodel import multiLayerModel as mlmod from rsf.recipes.kimodel import kirchoffNewtonModeling as kinewmod +# Establish building dependencies +Depends('interpolatedDataCube.rsf','multiLayerDataCube.rsf') +Depends('interpolatedDataCube2.rsf','interpolatedDataCube.rsf') +Depends('crsParameters-m0-0-t0-0.rsf','interpolatedDataCube2.rsf') + xmax = 6.0 zmax = 2.0 @@ -206,6 +211,9 @@ for i in range(nm0): files = glob.glob('creStackedTrace-*.rsf') length = len(files) +# Stacked section depends of the last CRE stacked trace +Depends('stackedSection.rsf','creStackedTrace-m0-'+str(length-1)+'.rsf') + sortedFiles = [] for i in range(length): string = 'creStackedTrace-m0-%i.rsf' % i diff --git a/experiments/multiLayerModel/cre/SConstruct b/experiments/multiLayerModel/cre/SConstruct index af1a49c..ea722a5 100644 --- a/experiments/multiLayerModel/cre/SConstruct +++ b/experiments/multiLayerModel/cre/SConstruct @@ -27,6 +27,16 @@ from rsf.recipes.pefInterpolation import pefInterpolation as pef from rsf.recipes.kimodel import multiLayerModel as mlmod from rsf.recipes.kimodel import kirchoffNewtonModeling as kinewmod +# Recipes +from rsf.recipes.pefInterpolation import pefInterpolation as pef +from rsf.recipes.kimodel import multiLayerModel as mlmod +from rsf.recipes.kimodel import kirchoffNewtonModeling as kinewmod + +# Establish building dependencies +Depends('interpolatedDataCube.rsf','multiLayerDataCube.rsf') +Depends('interpolatedDataCube2.rsf','interpolatedDataCube.rsf') +Depends('crsParameters-m0-0-t0-0.rsf','interpolatedDataCube2.rsf') + xmax = 6.0 zmax = 2.0 @@ -202,6 +212,9 @@ for i in range(nm0): files = glob.glob('creStackedTrace-*.rsf') length = len(files) +# Stacked section depends of the last CRE stacked trace +Depends('stackedSection.rsf','creStackedTrace-m0-'+str(length-1)+'.rsf') + sortedFiles = [] for i in range(length): string = 'creStackedTrace-m0-%i.rsf' % i From 43aad28e778b013dc2dc79f4d0f135a3c1f6cc8c Mon Sep 17 00:00:00 2001 From: Hosgator VPS Date: Sat, 12 Sep 2020 22:39:18 -0300 Subject: [PATCH 07/17] Use atexit to remove temporary files after building #44 The atexit will launch the after_build function that calls os.system commands to remove rsf temporary files. And establish the datacube and multiLayerDataCube as a stacked section dependency --- .../fullInterpolationAndStack/SConstruct | 28 +++++++++++++++---- .../fullInterpolationAndStackCDS/SConstruct | 28 +++++++++++++++---- experiments/multiLayerModel/cds/SConstruct | 18 +++++++++++- experiments/multiLayerModel/cre/SConstruct | 18 +++++++++++- 4 files changed, 78 insertions(+), 14 deletions(-) diff --git a/experiments/fullInterpolationAndStack/SConstruct b/experiments/fullInterpolationAndStack/SConstruct index 0bd7e9d..f456388 100644 --- a/experiments/fullInterpolationAndStack/SConstruct +++ b/experiments/fullInterpolationAndStack/SConstruct @@ -26,6 +26,20 @@ from rsf.recipes.pefInterpolation import pefInterpolation as pef # Import glob python library import glob +import atexit +import os + +def after_build(): + os.system('sfrm crsParameters-m0*') + os.system('sfrm creMhCoordinates-m0*') + os.system('sfrm creMcoordinate-m0*') + os.system('sfrm creTimeCurveCube-m0*') + os.system('sfrm creGatherCube-m0*') + os.system('sfrm creTimeCurveCube-m0') + os.system('sfrm creGatherTrace-m0*') + os.system('sfrm creTimeCurveTrace-m0*') + os.system('sfrm creStackedTrace-m0*') + # Establish building dependencies Depends('interpolatedDataCube.rsf','dataCube.rsf') Depends('interpolatedDataCube2.rsf','interpolatedDataCube.rsf') @@ -40,12 +54,12 @@ a2=2 # PEF smooth radius rect1=50 -rect2 +rect2=2 # PEF interpolation pef('dataCube', 'interpolatedDataCube', - nm=201, + nm=401, dm=0.025, nt=1001, dt=0.004, @@ -59,7 +73,7 @@ pef('dataCube', # PEF interpolation pef('interpolatedDataCube', 'interpolatedDataCube2', - nm=401, + nm=802, dm=0.0125, nt=1001, dt=0.004, @@ -76,10 +90,10 @@ pef('interpolatedDataCube', v0 = 1.5 ot0 = 1.0 dt0 = 0.004 -nt0 = 500 +nt0 = 3 om0 = 3 dm0 = 0.5 -nm0 = 9 +nm0 = 2 for i in range(nm0): @@ -183,7 +197,7 @@ files = glob.glob('creStackedTrace-*.rsf') length = len(files) # Stacked section depends of the last CRE stacked trace -Depends('stackedSection.rsf','creStackedTrace-m0-'+str(length-1)+'.rsf') +Depends('stackedSection.rsf',['dataCube.rsf','creStackedTrace-m0-'+str(nm0-1)+'.rsf']) sortedFiles = [] for i in range(length): @@ -200,4 +214,6 @@ Flow('filtStackedSection','stackedSection', bandpass fhi=20 --out=stdout ''') +atexit.register(after_build) + End() diff --git a/experiments/fullInterpolationAndStackCDS/SConstruct b/experiments/fullInterpolationAndStackCDS/SConstruct index 1f30ee4..ca6478d 100644 --- a/experiments/fullInterpolationAndStackCDS/SConstruct +++ b/experiments/fullInterpolationAndStackCDS/SConstruct @@ -30,6 +30,20 @@ from rsf.recipes.pefInterpolation import pefInterpolation as pef # Import glob python library import glob +import atexit +import os + +def after_build(): + os.system('sfrm crsParameters-m0*') + os.system('sfrm creMhCoordinates-m0*') + os.system('sfrm creMcoordinate-m0*') + os.system('sfrm creTimeCurveCube-m0*') + os.system('sfrm creGatherCube-m0*') + os.system('sfrm creTimeCurveCube-m0') + os.system('sfrm creGatherTrace-m0*') + os.system('sfrm creTimeCurveTrace-m0*') + os.system('sfrm creStackedTrace-m0*') + # Establish building dependencies Depends('interpolatedDataCube.rsf','dataCube.rsf') Depends('interpolatedDataCube2.rsf','interpolatedDataCube.rsf') @@ -44,12 +58,12 @@ a2=2 # PEF smooth radius rect1=50 -rect2 +rect2=2 # PEF interpolation pef('dataCube', 'interpolatedDataCube', - nm=201, + nm=401, dm=0.025, nt=1001, dt=0.004, @@ -63,7 +77,7 @@ pef('dataCube', # PEF interpolation pef('interpolatedDataCube', 'interpolatedDataCube2', - nm=401, + nm=802, dm=0.0125, nt=1001, dt=0.004, @@ -80,10 +94,10 @@ pef('interpolatedDataCube', v0 = 1.5 ot0 = 1.0 dt0 = 0.004 -nt0 = 500 +nt0 = 3 om0 = 3 dm0 = 0.5 -nm0 = 9 +nm0 = 2 for i in range(nm0): @@ -187,7 +201,7 @@ files = glob.glob('creStackedTrace-*.rsf') length = len(files) # Stacked section depends of the last CRE stacked trace -Depends('stackedSection.rsf','creStackedTrace-m0-'+str(length-1)+'.rsf') +Depends('stackedSection.rsf',['dataCube.rsf','creStackedTrace-m0-'+str(nm0-1)+'.rsf']) sortedFiles = [] for i in range(length): @@ -204,4 +218,6 @@ Flow('filtStackedSection','stackedSection', bandpass fhi=20 --out=stdout ''') +atexit.register(after_build) + End() diff --git a/experiments/multiLayerModel/cds/SConstruct b/experiments/multiLayerModel/cds/SConstruct index c539edd..a144d73 100644 --- a/experiments/multiLayerModel/cds/SConstruct +++ b/experiments/multiLayerModel/cds/SConstruct @@ -26,6 +26,20 @@ from rsf.proj import * # Import glob python library import glob +import atexit +import os + +def after_build(): + os.system('sfrm crsParameters-m0*') + os.system('sfrm creMhCoordinates-m0*') + os.system('sfrm creMcoordinate-m0*') + os.system('sfrm creTimeCurveCube-m0*') + os.system('sfrm creGatherCube-m0*') + os.system('sfrm creTimeCurveCube-m0') + os.system('sfrm creGatherTrace-m0*') + os.system('sfrm creTimeCurveTrace-m0*') + os.system('sfrm creStackedTrace-m0*') + # Recipes from rsf.recipes.pefInterpolation import pefInterpolation as pef from rsf.recipes.kimodel import multiLayerModel as mlmod @@ -212,7 +226,7 @@ files = glob.glob('creStackedTrace-*.rsf') length = len(files) # Stacked section depends of the last CRE stacked trace -Depends('stackedSection.rsf','creStackedTrace-m0-'+str(length-1)+'.rsf') +Depends('stackedSection.rsf',['multiLayerDataCube.rsf','creStackedTrace-m0-'+str(nm0-1)+'.rsf']) sortedFiles = [] for i in range(length): @@ -229,4 +243,6 @@ Flow('filtStackedSection','stackedSection', bandpass fhi=20 --out=stdout ''') +atexit.register(after_build) + End() diff --git a/experiments/multiLayerModel/cre/SConstruct b/experiments/multiLayerModel/cre/SConstruct index ea722a5..e940dfb 100644 --- a/experiments/multiLayerModel/cre/SConstruct +++ b/experiments/multiLayerModel/cre/SConstruct @@ -22,6 +22,20 @@ from rsf.proj import * # Import glob python library import glob +import atexit +import os + +def after_build(): + os.system('sfrm crsParameters-m0*') + os.system('sfrm creMhCoordinates-m0*') + os.system('sfrm creMcoordinate-m0*') + os.system('sfrm creTimeCurveCube-m0*') + os.system('sfrm creGatherCube-m0*') + os.system('sfrm creTimeCurveCube-m0') + os.system('sfrm creGatherTrace-m0*') + os.system('sfrm creTimeCurveTrace-m0*') + os.system('sfrm creStackedTrace-m0*') + # Recipes from rsf.recipes.pefInterpolation import pefInterpolation as pef from rsf.recipes.kimodel import multiLayerModel as mlmod @@ -213,7 +227,7 @@ files = glob.glob('creStackedTrace-*.rsf') length = len(files) # Stacked section depends of the last CRE stacked trace -Depends('stackedSection.rsf','creStackedTrace-m0-'+str(length-1)+'.rsf') +Depends('stackedSection.rsf',['multiLayerDataCube.rsf','creStackedTrace-m0-'+str(nm0-1)+'.rsf']) sortedFiles = [] for i in range(length): @@ -230,4 +244,6 @@ Flow('filtStackedSection','stackedSection', bandpass fhi=20 --out=stdout ''') +atexit.register(after_build) + End() From 588bd7857a66b9c931f7a3ef1b2227667b681261 Mon Sep 17 00:00:00 2001 From: Hosgator VPS Date: Sat, 12 Sep 2020 22:49:51 -0300 Subject: [PATCH 08/17] Correct the name of Kirchhoff Newton recipe and test #44 Do a simple test of the experiments and SConstruct building for a couple of (m0,t0) pairs --- experiments/multiLayerModel/cds/SConstruct | 6 +++--- experiments/multiLayerModel/cre/SConstruct | 11 +++-------- 2 files changed, 6 insertions(+), 11 deletions(-) diff --git a/experiments/multiLayerModel/cds/SConstruct b/experiments/multiLayerModel/cds/SConstruct index a144d73..8175dfa 100644 --- a/experiments/multiLayerModel/cds/SConstruct +++ b/experiments/multiLayerModel/cds/SConstruct @@ -43,7 +43,7 @@ def after_build(): # Recipes from rsf.recipes.pefInterpolation import pefInterpolation as pef from rsf.recipes.kimodel import multiLayerModel as mlmod -from rsf.recipes.kimodel import kirchoffNewtonModeling as kinewmod +from rsf.recipes.kimodel import kirchhoffNewtonModeling as kinewmod # Establish building dependencies Depends('interpolatedDataCube.rsf','multiLayerDataCube.rsf') @@ -118,10 +118,10 @@ pef('interpolatedDataCube', v0 = 1.5 ot0 = 0.3 dt0 = 0.008 -nt0 = 331 +nt0 = 2 om0 = 2 dm0 = 0.025 -nm0 = 108 +nm0 = 3 dataCube='interpolatedDataCube2' for i in range(nm0): diff --git a/experiments/multiLayerModel/cre/SConstruct b/experiments/multiLayerModel/cre/SConstruct index e940dfb..80dde76 100644 --- a/experiments/multiLayerModel/cre/SConstruct +++ b/experiments/multiLayerModel/cre/SConstruct @@ -39,12 +39,7 @@ def after_build(): # Recipes from rsf.recipes.pefInterpolation import pefInterpolation as pef from rsf.recipes.kimodel import multiLayerModel as mlmod -from rsf.recipes.kimodel import kirchoffNewtonModeling as kinewmod - -# Recipes -from rsf.recipes.pefInterpolation import pefInterpolation as pef -from rsf.recipes.kimodel import multiLayerModel as mlmod -from rsf.recipes.kimodel import kirchoffNewtonModeling as kinewmod +from rsf.recipes.kimodel import kirchhoffNewtonModeling as kinewmod # Establish building dependencies Depends('interpolatedDataCube.rsf','multiLayerDataCube.rsf') @@ -119,10 +114,10 @@ pef('interpolatedDataCube', v0 = 1.5 ot0 = 0.3 dt0 = 0.008 -nt0 = 331 +nt0 = 2 om0 = 2 dm0 = 0.025 -nm0 = 108 +nm0 = 3 dataCube='interpolatedDataCube2' for i in range(nm0): From 85741716bbaf604cc1184a6b189e1219ed7af8ba Mon Sep 17 00:00:00 2001 From: Hosgator VPS Date: Sun, 13 Sep 2020 12:55:19 -0300 Subject: [PATCH 09/17] Aperture should be the same for sfcrestack and sfgetcregather #44 As referenced in bug report #49, aperture parameter should be the same for the programs sfcrestack and sfgetcregather to avoid building errors in the stacking. Aperture parameter is the number of offsets to consider in the cre trajectory for sfgetcregather and the number of offsets to stack in sfcrectack. This parameter was introduced in sfgetcregather program to correct bug #38 --- experiments/fullInterpolationAndStack/SConstruct | 6 +++--- experiments/fullInterpolationAndStackCDS/SConstruct | 2 +- experiments/multiLayerModel/cds/SConstruct | 2 +- experiments/multiLayerModel/cre/SConstruct | 2 +- 4 files changed, 6 insertions(+), 6 deletions(-) diff --git a/experiments/fullInterpolationAndStack/SConstruct b/experiments/fullInterpolationAndStack/SConstruct index f456388..1db8b4a 100644 --- a/experiments/fullInterpolationAndStack/SConstruct +++ b/experiments/fullInterpolationAndStack/SConstruct @@ -38,12 +38,12 @@ def after_build(): os.system('sfrm creTimeCurveCube-m0') os.system('sfrm creGatherTrace-m0*') os.system('sfrm creTimeCurveTrace-m0*') - os.system('sfrm creStackedTrace-m0*') + os.system('sfrm creStackedTrace-m0*') # Establish building dependencies Depends('interpolatedDataCube.rsf','dataCube.rsf') Depends('interpolatedDataCube2.rsf','interpolatedDataCube.rsf') -Depends('crsParameters-m0-0-t0-0.rsf','interpolatedDataCube2.rsf') +Depends('crsParameters-m0-0-t0-0.rsf','interpolatedDataCube.rsf') # Generate Gaussian reflector model and data cube kimod() @@ -133,7 +133,7 @@ for i in range(nm0): #Get CRE Gather from interpolated Data Cube Flow([creGather,creMcoordinate],['interpolatedDataCube2',creMhCoordinates], ''' - getcregather verb=y cremh=${SOURCES[1]} m=${TARGETS[1]} | + getcregather verb=y cremh=${SOURCES[1]} m=${TARGETS[1]} aperture=20 | put label1="Time" unit1="s" label2="Offset" unit2="km" ''') diff --git a/experiments/fullInterpolationAndStackCDS/SConstruct b/experiments/fullInterpolationAndStackCDS/SConstruct index ca6478d..f514f89 100644 --- a/experiments/fullInterpolationAndStackCDS/SConstruct +++ b/experiments/fullInterpolationAndStackCDS/SConstruct @@ -137,7 +137,7 @@ for i in range(nm0): #Get CRE Gather from interpolated Data Cube Flow([creGather,creMcoordinate],['interpolatedDataCube2',creMhCoordinates], ''' - getcregather verb=y cremh=${SOURCES[1]} m=${TARGETS[1]} | + getcregather verb=y cremh=${SOURCES[1]} m=${TARGETS[1]} aperture=20 | put label1="Time" unit1="s" label2="Offset" unit2="km" ''') diff --git a/experiments/multiLayerModel/cds/SConstruct b/experiments/multiLayerModel/cds/SConstruct index 8175dfa..024ca00 100644 --- a/experiments/multiLayerModel/cds/SConstruct +++ b/experiments/multiLayerModel/cds/SConstruct @@ -162,7 +162,7 @@ for i in range(nm0): #Get CRE Gather from interpolated Data Cube Flow([creGather,creMcoordinate],['interpolatedDataCube2',creMhCoordinates], ''' - getcregather aperture=50 verb=y cremh=${SOURCES[1]} m=${TARGETS[1]} | + getcregather aperture=50 verb=y cremh=${SOURCES[1]} m=${TARGETS[1]} aperture=20 | put label1="Time" unit1="s" label2="Offset" unit2="km" ''') diff --git a/experiments/multiLayerModel/cre/SConstruct b/experiments/multiLayerModel/cre/SConstruct index 80dde76..597b794 100644 --- a/experiments/multiLayerModel/cre/SConstruct +++ b/experiments/multiLayerModel/cre/SConstruct @@ -158,7 +158,7 @@ for i in range(nm0): #Get CRE Gather from interpolated Data Cube Flow([creGather,creMcoordinate],['interpolatedDataCube2',creMhCoordinates], ''' - getcregather aperture=50 verb=y cremh=${SOURCES[1]} m=${TARGETS[1]} | + getcregather aperture=50 verb=y cremh=${SOURCES[1]} m=${TARGETS[1]} aperture=20 | put label1="Time" unit1="s" label2="Offset" unit2="km" ''') From b44ca82a2e6940811ab85dc50fa7a4a494d27f7d Mon Sep 17 00:00:00 2001 From: Hosgator VPS Date: Mon, 14 Sep 2020 12:09:50 -0300 Subject: [PATCH 10/17] Correct dependency to stacked section #44 The stacked section depends of the creGatherTraces and creStackedTraces too. So, Establish both as stacked section dependencies --- .../fullInterpolationAndStack/SConstruct | 27 ++++++++++--------- .../fullInterpolationAndStackCDS/SConstruct | 5 +++- experiments/multiLayerModel/cds/SConstruct | 4 ++- experiments/multiLayerModel/cre/SConstruct | 4 ++- 4 files changed, 25 insertions(+), 15 deletions(-) diff --git a/experiments/fullInterpolationAndStack/SConstruct b/experiments/fullInterpolationAndStack/SConstruct index 1db8b4a..6ce526a 100644 --- a/experiments/fullInterpolationAndStack/SConstruct +++ b/experiments/fullInterpolationAndStack/SConstruct @@ -30,15 +30,16 @@ import atexit import os def after_build(): - os.system('sfrm crsParameters-m0*') - os.system('sfrm creMhCoordinates-m0*') - os.system('sfrm creMcoordinate-m0*') - os.system('sfrm creTimeCurveCube-m0*') - os.system('sfrm creGatherCube-m0*') - os.system('sfrm creTimeCurveCube-m0') - os.system('sfrm creGatherTrace-m0*') - os.system('sfrm creTimeCurveTrace-m0*') - os.system('sfrm creStackedTrace-m0*') +# os.system('sfrm crsParameters-m0*') +# os.system('sfrm creMhCoordinates-m0*') +# os.system('sfrm creMcoordinate-m0*') +# os.system('sfrm creTimeCurveCube-m0*') +# os.system('sfrm creGatherCube-m0*') +# os.system('sfrm creTimeCurveCube-m0') +# os.system('sfrm creGatherTrace-m0*') +# os.system('sfrm creTimeCurveTrace-m0*') +# os.system('sfrm creStackedTrace-m0*') + print('acabou') # Establish building dependencies Depends('interpolatedDataCube.rsf','dataCube.rsf') @@ -63,7 +64,7 @@ pef('dataCube', dm=0.025, nt=1001, dt=0.004, - nhi=161, + nhi=21, a1=a1, a2=a2, rect1=rect1, @@ -77,7 +78,7 @@ pef('interpolatedDataCube', dm=0.0125, nt=1001, dt=0.004, - nhi=161, + nhi=21, a1=a1, a2=a2, rect1=rect1, @@ -197,7 +198,9 @@ files = glob.glob('creStackedTrace-*.rsf') length = len(files) # Stacked section depends of the last CRE stacked trace -Depends('stackedSection.rsf',['dataCube.rsf','creStackedTrace-m0-'+str(nm0-1)+'.rsf']) +Depends('stackedSection.rsf',['dataCube.rsf', + 'creStackedTrace-m0-'+str(nm0-1)+'.rsf', + 'creGatherTrace-m0-'+str(nm0-1)+'.rsf']) sortedFiles = [] for i in range(length): diff --git a/experiments/fullInterpolationAndStackCDS/SConstruct b/experiments/fullInterpolationAndStackCDS/SConstruct index f514f89..965d45c 100644 --- a/experiments/fullInterpolationAndStackCDS/SConstruct +++ b/experiments/fullInterpolationAndStackCDS/SConstruct @@ -201,7 +201,10 @@ files = glob.glob('creStackedTrace-*.rsf') length = len(files) # Stacked section depends of the last CRE stacked trace -Depends('stackedSection.rsf',['dataCube.rsf','creStackedTrace-m0-'+str(nm0-1)+'.rsf']) +Depends('stackedSection.rsf',['dataCube.rsf', + 'creStackedTrace-m0-'+str(nm0-1)+'.rsf', + 'creGatherTrace-m0-'+str(nm0-1)+'.rsf']) + sortedFiles = [] for i in range(length): diff --git a/experiments/multiLayerModel/cds/SConstruct b/experiments/multiLayerModel/cds/SConstruct index 024ca00..d4bc7f6 100644 --- a/experiments/multiLayerModel/cds/SConstruct +++ b/experiments/multiLayerModel/cds/SConstruct @@ -226,7 +226,9 @@ files = glob.glob('creStackedTrace-*.rsf') length = len(files) # Stacked section depends of the last CRE stacked trace -Depends('stackedSection.rsf',['multiLayerDataCube.rsf','creStackedTrace-m0-'+str(nm0-1)+'.rsf']) +Depends('stackedSection.rsf',['multiLayerDataCube.rsf', + 'creStackedTrace-m0-'+str(nm0-1)+'.rsf', + 'creGatherTrace-m0-'+str(nm0-1)+'.rsf']) sortedFiles = [] for i in range(length): diff --git a/experiments/multiLayerModel/cre/SConstruct b/experiments/multiLayerModel/cre/SConstruct index 597b794..3f1beb9 100644 --- a/experiments/multiLayerModel/cre/SConstruct +++ b/experiments/multiLayerModel/cre/SConstruct @@ -222,7 +222,9 @@ files = glob.glob('creStackedTrace-*.rsf') length = len(files) # Stacked section depends of the last CRE stacked trace -Depends('stackedSection.rsf',['multiLayerDataCube.rsf','creStackedTrace-m0-'+str(nm0-1)+'.rsf']) +Depends('stackedSection.rsf',['multiLayerDataCube.rsf', + 'creStackedTrace-m0-'+str(nm0-1)+'.rsf', + 'creGatherTrace-m0-'+str(nm0-1)+'.rsf']) sortedFiles = [] for i in range(length): From e55f13026bd482ef14ddd145389ea507cefbf710 Mon Sep 17 00:00:00 2001 From: Hosgator VPS Date: Fri, 18 Sep 2020 17:45:15 -0300 Subject: [PATCH 11/17] Separate modeling and PEF interpolation from CRE Stack #44 To avoid multiple buildings of modeling and PEF interpolation steps separate the modeling and interpolation in another directory --- .../fullInterpolationAndStack/SConstruct | 76 ++----------- .../fullInterpolationAndStackCDS/SConstruct | 78 ++------------ .../fullInterpolationAndStackCDS/kimodel.py | 57 ---------- .../modelingAndPEFInterpolation/SConscript | 71 ++++++++++++ .../modelingAndPEFInterpolation/SConscript2 | 94 ++++++++++++++++ .../kimodel.py | 0 experiments/multiLayerModel/cds/SConstruct | 101 ++---------------- experiments/multiLayerModel/cre/SConstruct | 101 ++---------------- 8 files changed, 194 insertions(+), 384 deletions(-) delete mode 100644 experiments/fullInterpolationAndStackCDS/kimodel.py create mode 100644 experiments/modelingAndPEFInterpolation/SConscript create mode 100644 experiments/modelingAndPEFInterpolation/SConscript2 rename experiments/{fullInterpolationAndStack => modelingAndPEFInterpolation}/kimodel.py (100%) diff --git a/experiments/fullInterpolationAndStack/SConstruct b/experiments/fullInterpolationAndStack/SConstruct index 6ce526a..8a5a213 100644 --- a/experiments/fullInterpolationAndStack/SConstruct +++ b/experiments/fullInterpolationAndStack/SConstruct @@ -19,72 +19,9 @@ # Madagascar package from rsf.proj import * -# Recipes -from kimodel import kirchoffModeling as kimod -from rsf.recipes.pefInterpolation import pefInterpolation as pef - # Import glob python library import glob -import atexit -import os - -def after_build(): -# os.system('sfrm crsParameters-m0*') -# os.system('sfrm creMhCoordinates-m0*') -# os.system('sfrm creMcoordinate-m0*') -# os.system('sfrm creTimeCurveCube-m0*') -# os.system('sfrm creGatherCube-m0*') -# os.system('sfrm creTimeCurveCube-m0') -# os.system('sfrm creGatherTrace-m0*') -# os.system('sfrm creTimeCurveTrace-m0*') -# os.system('sfrm creStackedTrace-m0*') - print('acabou') - -# Establish building dependencies -Depends('interpolatedDataCube.rsf','dataCube.rsf') -Depends('interpolatedDataCube2.rsf','interpolatedDataCube.rsf') -Depends('crsParameters-m0-0-t0-0.rsf','interpolatedDataCube.rsf') - -# Generate Gaussian reflector model and data cube -kimod() - -# PEF coeficients -a1=10 -a2=2 - -# PEF smooth radius -rect1=50 -rect2=2 - -# PEF interpolation -pef('dataCube', - 'interpolatedDataCube', - nm=401, - dm=0.025, - nt=1001, - dt=0.004, - nhi=21, - a1=a1, - a2=a2, - rect1=rect1, - rect2=rect2 -) - -# PEF interpolation -pef('interpolatedDataCube', - 'interpolatedDataCube2', - nm=802, - dm=0.0125, - nt=1001, - dt=0.004, - nhi=21, - a1=a1, - a2=a2, - rect1=rect1, - rect2=rect2 -) - # CRE stacking # It uses Very Fast Simulated Aneeling and non hyperbolic CRS # to get zero offset CRS parameters (RN, RNIP and BETA) from data cube @@ -95,6 +32,9 @@ nt0 = 3 om0 = 3 dm0 = 0.5 nm0 = 2 +inputDir = '../modelingAndPEFInterpolation/' +datacube = inputdir+'dataCube' +interpolatedDataCube = inputDir+'interpolatedDataCube2' for i in range(nm0): @@ -119,20 +59,20 @@ for i in range(nm0): creGatherPlot = 'crePlot-m0-%g-t0-%g' % (i,j) # Very Fast Simulated Aneelling Global Optimization (VFSA) - Flow(crsParameters,'dataCube', + Flow(crsParameters,dataCube, ''' vfsacrsnh m0=%g v0=%g t0=%g verb=y repeat=3 ''' % (m0,v0,t0)) # Calculate CRE trajectory - Flow(creMhCoordinates,['interpolatedDataCube2',crsParameters], + Flow(creMhCoordinates,[interpolatedDataCube,crsParameters], ''' cretrajec verb=y m0=%g param=${SOURCES[1]} | put unit1="Offset" label1="Km" ''' % (m0)) #Get CRE Gather from interpolated Data Cube - Flow([creGather,creMcoordinate],['interpolatedDataCube2',creMhCoordinates], + Flow([creGather,creMcoordinate],[interpolatedDataCube,creMhCoordinates], ''' getcregather verb=y cremh=${SOURCES[1]} m=${TARGETS[1]} aperture=20 | put label1="Time" unit1="s" label2="Offset" unit2="km" @@ -198,7 +138,7 @@ files = glob.glob('creStackedTrace-*.rsf') length = len(files) # Stacked section depends of the last CRE stacked trace -Depends('stackedSection.rsf',['dataCube.rsf', +Depends('stackedSection.rsf',[dataCube.rsf, 'creStackedTrace-m0-'+str(nm0-1)+'.rsf', 'creGatherTrace-m0-'+str(nm0-1)+'.rsf']) @@ -217,6 +157,4 @@ Flow('filtStackedSection','stackedSection', bandpass fhi=20 --out=stdout ''') -atexit.register(after_build) - End() diff --git a/experiments/fullInterpolationAndStackCDS/SConstruct b/experiments/fullInterpolationAndStackCDS/SConstruct index 965d45c..fad4424 100644 --- a/experiments/fullInterpolationAndStackCDS/SConstruct +++ b/experiments/fullInterpolationAndStackCDS/SConstruct @@ -10,7 +10,7 @@ # traveltime approximation as stacking curve, with CDS condition (RNIP=RN) applied. # Instead of conventional CRE traveltime approximation. # -# Site: http://diracks.github.io +# Site: https://dirack.github.io # # Version 2.0 # @@ -23,71 +23,9 @@ # Madagascar package from rsf.proj import * -# Recipes -from kimodel import kirchoffModeling as kimod -from rsf.recipes.pefInterpolation import pefInterpolation as pef - # Import glob python library import glob -import atexit -import os - -def after_build(): - os.system('sfrm crsParameters-m0*') - os.system('sfrm creMhCoordinates-m0*') - os.system('sfrm creMcoordinate-m0*') - os.system('sfrm creTimeCurveCube-m0*') - os.system('sfrm creGatherCube-m0*') - os.system('sfrm creTimeCurveCube-m0') - os.system('sfrm creGatherTrace-m0*') - os.system('sfrm creTimeCurveTrace-m0*') - os.system('sfrm creStackedTrace-m0*') - -# Establish building dependencies -Depends('interpolatedDataCube.rsf','dataCube.rsf') -Depends('interpolatedDataCube2.rsf','interpolatedDataCube.rsf') -Depends('crsParameters-m0-0-t0-0.rsf','interpolatedDataCube2.rsf') - -# Generate Gaussian reflector model and data cube -kimod() - -# PEF coeficients -a1=10 -a2=2 - -# PEF smooth radius -rect1=50 -rect2=2 - -# PEF interpolation -pef('dataCube', - 'interpolatedDataCube', - nm=401, - dm=0.025, - nt=1001, - dt=0.004, - nhi=161, - a1=a1, - a2=a2, - rect1=rect1, - rect2=rect2 -) - -# PEF interpolation -pef('interpolatedDataCube', - 'interpolatedDataCube2', - nm=802, - dm=0.0125, - nt=1001, - dt=0.004, - nhi=161, - a1=a1, - a2=a2, - rect1=rect1, - rect2=rect2 -) - # CRE stacking # It uses Very Fast Simulated Aneeling and non hyperbolic CRS # to get zero offset CRS parameters (RN, RNIP and BETA) from data cube @@ -98,6 +36,9 @@ nt0 = 3 om0 = 3 dm0 = 0.5 nm0 = 2 +inputDir = '../modelingAndPEFInterpolation/' +datacube = inputdir+'dataCube' +interpolatedDataCube = inputDir+'interpolatedDataCube2' for i in range(nm0): @@ -122,20 +63,20 @@ for i in range(nm0): creGatherPlot = 'crePlot-m0-%g-t0-%g' % (i,j) # Very Fast Simulated Aneelling Global Optimization (VFSA) - Flow(crsParameters,'dataCube', + Flow(crsParameters,dataCube, ''' vfsacrsnh m0=%g v0=%g t0=%g verb=y repeat=3 ''' % (m0,v0,t0)) # Calculate CRE trajectory - Flow(creMhCoordinates,['interpolatedDataCube2',crsParameters], + Flow(creMhCoordinates,[interpolatedDataCube,crsParameters], ''' cretrajec verb=y m0=%g param=${SOURCES[1]} | put unit1="Offset" label1="Km" ''' % (m0)) #Get CRE Gather from interpolated Data Cube - Flow([creGather,creMcoordinate],['interpolatedDataCube2',creMhCoordinates], + Flow([creGather,creMcoordinate],[interpolatedDataCube,creMhCoordinates], ''' getcregather verb=y cremh=${SOURCES[1]} m=${TARGETS[1]} aperture=20 | put label1="Time" unit1="s" label2="Offset" unit2="km" @@ -201,11 +142,10 @@ files = glob.glob('creStackedTrace-*.rsf') length = len(files) # Stacked section depends of the last CRE stacked trace -Depends('stackedSection.rsf',['dataCube.rsf', +Depends('stackedSection.rsf',[dataCube.rsf, 'creStackedTrace-m0-'+str(nm0-1)+'.rsf', 'creGatherTrace-m0-'+str(nm0-1)+'.rsf']) - sortedFiles = [] for i in range(length): string = 'creStackedTrace-m0-%i.rsf' % i @@ -221,6 +161,4 @@ Flow('filtStackedSection','stackedSection', bandpass fhi=20 --out=stdout ''') -atexit.register(after_build) - End() diff --git a/experiments/fullInterpolationAndStackCDS/kimodel.py b/experiments/fullInterpolationAndStackCDS/kimodel.py deleted file mode 100644 index 2255f78..0000000 --- a/experiments/fullInterpolationAndStackCDS/kimodel.py +++ /dev/null @@ -1,57 +0,0 @@ -#!/usr/bin/env python -# -*- coding: utf-8 -*- -# -# kimodel.py (Madagascar Recipe) -# -# Purpose: Recipe to Kirchhoff modeling of a gaussian reflector. -# -# Important!: It should be called from a SConstruct -# -# Site: https://dirack.github.io -# -# Version 2.0 -# -# Programer: Rodolfo A. C. Neves (Dirack) 04/03/2020 -# -# Email: rodolfo_profissional@hotmail.com -# -# License: GPL-3.0 . - -# Madagascar package -from rsf.proj import * - -def kirchoffModeling(filename='dataCube'): - ''' - Modeling function of a gaussian reflector - ''' - - # Modeling: Gaussian reflector in a velocity linear model - # velocity increases with depth with a 0.5 velocity gradient - Flow('gaussianReflector',None, - ''' - math d1=0.01 n1=2001 o1=-5 unit1=km label1=Offset - output="4-3*exp(-(x1-5)^2/9)" - ''') - - # Velocity Model - Flow('velocityModel','gaussianReflector', - ''' - window min1=0 max1=10 | - spray axis=1 n=451 d=0.01 o=0 label=Depth unit=km | - math output="1.5+0.5*x1+0.0*x2" - ''') - - Flow('reflectorDip','gaussianReflector','math output="2/3*(x1-5)*input" ') - - # Kirchoff Modeling - Flow(filename,'gaussianReflector reflectorDip', - ''' - kirmod cmp=y dip=${SOURCES[1]} - nh=161 dh=0.025 h0=0 - ns=401 ds=0.025 s0=0 - freq=10 dt=0.004 nt=1001 - vel=1.5 gradz=0.5 gradx=0.0 verb=y | - put d2=0.0125 label3="CMP" unit3="Km" label2="Offset" unit2="Km" label1=Time unit1=s - ''') - - diff --git a/experiments/modelingAndPEFInterpolation/SConscript b/experiments/modelingAndPEFInterpolation/SConscript new file mode 100644 index 0000000..a62088f --- /dev/null +++ b/experiments/modelingAndPEFInterpolation/SConscript @@ -0,0 +1,71 @@ +#!/usr/bin/env python +# -*- coding: utf-8 -*- +# +# SConscript (Madagascar Script) +# +# Purpose: Kirchhoff modeling of a gaussian reflector in a linear velocity model +# and PEF interpolation of the seismic data cube (Time x Offset x CMP) to increase +# CMP sampling. +# +# Site: https://dirack.github.io +# +# Version 2.0 +# +# Programer: Rodolfo A. C. Neves (Dirack) 04/03/2020 +# +# Email: rodolfo_profissional@hotmail.com +# +# License: GPL-3.0 . + +# Madagascar package +from rsf.proj import * + +# Recipes +from kimodel import kirchoffModeling as kimod +from rsf.recipes.pefInterpolation import pefInterpolation as pef + +# Establish building dependencies +Depends('interpolatedDataCube.rsf','dataCube.rsf') +Depends('interpolatedDataCube2.rsf','interpolatedDataCube.rsf') +Depends('crsParameters-m0-0-t0-0.rsf','interpolatedDataCube.rsf') + +# Generate Gaussian reflector model and data cube +kimod() + +# PEF coeficients +a1=10 +a2=2 + +# PEF smooth radius +rect1=50 +rect2=2 + +# PEF interpolation +pef('dataCube', + 'interpolatedDataCube', + nm=401, + dm=0.025, + nt=1001, + dt=0.004, + nhi=21, + a1=a1, + a2=a2, + rect1=rect1, + rect2=rect2 +) + +# PEF interpolation +pef('interpolatedDataCube', + 'interpolatedDataCube2', + nm=802, + dm=0.0125, + nt=1001, + dt=0.004, + nhi=21, + a1=a1, + a2=a2, + rect1=rect1, + rect2=rect2 +) + +End() diff --git a/experiments/modelingAndPEFInterpolation/SConscript2 b/experiments/modelingAndPEFInterpolation/SConscript2 new file mode 100644 index 0000000..eb0168e --- /dev/null +++ b/experiments/modelingAndPEFInterpolation/SConscript2 @@ -0,0 +1,94 @@ +#!/usr/bin/env python +# -*- coding: utf-8 -*- +# +# SConscript (Madagascar Script) +# +# Purpose: Kirchhoff Newton modeling of a multi layer velocity model. +# +# Site: https://dirack.github.io +# +# Version 2.0 +# +# Programer: Rodolfo A. C. Neves (Dirack) 04/03/2020 +# +# Email: rodolfo_profissional@hotmail.com +# +# License: GPL-3.0 . + +# Madagascar package +from rsf.proj import * + +# Recipes +from rsf.recipes.pefInterpolation import pefInterpolation as pef +from rsf.recipes.kimodel import multiLayerModel as mlmod +from rsf.recipes.kimodel import kirchhoffNewtonModeling as kinewmod + +# Establish building dependencies +Depends('interpolatedDataCube.rsf','multiLayerDataCube.rsf') +Depends('interpolatedDataCube2.rsf','interpolatedDataCube.rsf') +Depends('crsParameters-m0-0-t0-0.rsf','interpolatedDataCube2.rsf') + +xmax = 6.0 +zmax = 2.0 + +layers = ((0.30,0.50,0.20,0.30), + (1.65,1.85,1.55,1.65)) + +velocities = (1.508, + 1.690, + 2.0) + +# Generate multi layer model and data cube +mlmod(interfaces='interfaces', + dipsfile='interfacesDip', + modelfile='mod1', + xmax=xmax, + zmax=zmax, + layers=layers, + velocities=velocities) + +# Generate a modeled data cube +kinewmod(reflectors='interfaces', + reflectorsDip='interfacesDip', + filename='multiLayerDataCube', + velocities=velocities, + nt=1001, + dt=0.004, + ns=201, + ds=0.025, + nh=161, + dh=0.025) + +# PEF interpolation of the data cube +a1=10 +a2=2 +rect1=50 +rect2=2 + +pef(dataCube='multiLayerDataCube', + interpolated='interpolatedDataCube', + nm=201, + dm=0.025, + nt=1001, + dt=0.004, + nhi=161, + a1=a1, + a2=a2, + rect1=rect1, + rect2=rect2) + +# Do the PEF interpolation one more time +# to increase the CMP sampling +pef('interpolatedDataCube', + 'interpolatedDataCube2', + nm=402, + dm=0.0125, + nt=1001, + dt=0.004, + nhi=161, + a1=a1, + a2=a2, + rect1=rect1, + rect2=rect2) + +End() diff --git a/experiments/fullInterpolationAndStack/kimodel.py b/experiments/modelingAndPEFInterpolation/kimodel.py similarity index 100% rename from experiments/fullInterpolationAndStack/kimodel.py rename to experiments/modelingAndPEFInterpolation/kimodel.py diff --git a/experiments/multiLayerModel/cds/SConstruct b/experiments/multiLayerModel/cds/SConstruct index d4bc7f6..5d1f747 100644 --- a/experiments/multiLayerModel/cds/SConstruct +++ b/experiments/multiLayerModel/cds/SConstruct @@ -26,93 +26,6 @@ from rsf.proj import * # Import glob python library import glob -import atexit -import os - -def after_build(): - os.system('sfrm crsParameters-m0*') - os.system('sfrm creMhCoordinates-m0*') - os.system('sfrm creMcoordinate-m0*') - os.system('sfrm creTimeCurveCube-m0*') - os.system('sfrm creGatherCube-m0*') - os.system('sfrm creTimeCurveCube-m0') - os.system('sfrm creGatherTrace-m0*') - os.system('sfrm creTimeCurveTrace-m0*') - os.system('sfrm creStackedTrace-m0*') - -# Recipes -from rsf.recipes.pefInterpolation import pefInterpolation as pef -from rsf.recipes.kimodel import multiLayerModel as mlmod -from rsf.recipes.kimodel import kirchhoffNewtonModeling as kinewmod - -# Establish building dependencies -Depends('interpolatedDataCube.rsf','multiLayerDataCube.rsf') -Depends('interpolatedDataCube2.rsf','interpolatedDataCube.rsf') -Depends('crsParameters-m0-0-t0-0.rsf','interpolatedDataCube2.rsf') - -xmax = 6.0 -zmax = 2.0 - -layers = ((0.30,0.50,0.20,0.30), - (1.65,1.85,1.55,1.65)) - -velocities = (1.508, - 1.690, - 2.0) - -# Generate multi layer model and data cube -mlmod(interfaces='interfaces', - dipsfile='interfacesDip', - modelfile='mod1', - xmax=xmax, - zmax=zmax, - layers=layers, - velocities=velocities) - -# Generate a modeled data cube -kinewmod(reflectors='interfaces', - reflectorsDip='interfacesDip', - filename='multiLayerDataCube', - velocities=velocities, - nt=1001, - dt=0.004, - ns=201, - ds=0.025, - nh=161, - dh=0.025) - -# PEF interpolation of the data cube -a1=10 -a2=2 -rect1=50 -rect2=2 - -pef(dataCube='multiLayerDataCube', - interpolated='interpolatedDataCube', - nm=201, - dm=0.025, - nt=1001, - dt=0.004, - nhi=161, - a1=a1, - a2=a2, - rect1=rect1, - rect2=rect2) - -# Do the PEF interpolation one more time -# to increase the CMP sampling -pef('interpolatedDataCube', - 'interpolatedDataCube2', - nm=402, - dm=0.0125, - nt=1001, - dt=0.004, - nhi=161, - a1=a1, - a2=a2, - rect1=rect1, - rect2=rect2) - # It uses Very Fast Simulated Aneeling and non hyperbolic CRS # to get zero offset CRS parameters (RN, RNIP and BETA) from data cube v0 = 1.5 @@ -122,7 +35,9 @@ nt0 = 2 om0 = 2 dm0 = 0.025 nm0 = 3 -dataCube='interpolatedDataCube2' +inputDir = '../../modelingAndPEFInterpolation/' +dataCube=inputDir+'multiLayerDataCube' +interpolatedDataCube=inputDir+'interpolatedDataCube2' for i in range(nm0): @@ -147,20 +62,20 @@ for i in range(nm0): creGatherPlot = 'crePlot-m0-%g-t0-%g' % (i,j) # Very Fast Simulated Aneelling Global Optimization (VFSA) - Flow(crsParameters,'interpolatedDataCube2', + Flow(crsParameters,dataCube, ''' vfsacrsnh m0=%g v0=%g t0=%g verb=y repeat=3 ''' % (m0,v0,t0)) # Calculate CRE trajectory - Flow(creMhCoordinates,['interpolatedDataCube2',crsParameters], + Flow(creMhCoordinates,[interpolatedDataCube,crsParameters], ''' cretrajec verb=y m0=%g param=${SOURCES[1]} | put unit1="Offset" label1="Km" ''' % (m0)) #Get CRE Gather from interpolated Data Cube - Flow([creGather,creMcoordinate],['interpolatedDataCube2',creMhCoordinates], + Flow([creGather,creMcoordinate],[interpolatedDataCube,creMhCoordinates], ''' getcregather aperture=50 verb=y cremh=${SOURCES[1]} m=${TARGETS[1]} aperture=20 | put label1="Time" unit1="s" label2="Offset" unit2="km" @@ -226,7 +141,7 @@ files = glob.glob('creStackedTrace-*.rsf') length = len(files) # Stacked section depends of the last CRE stacked trace -Depends('stackedSection.rsf',['multiLayerDataCube.rsf', +Depends('stackedSection.rsf',[dataCube, 'creStackedTrace-m0-'+str(nm0-1)+'.rsf', 'creGatherTrace-m0-'+str(nm0-1)+'.rsf']) @@ -245,6 +160,4 @@ Flow('filtStackedSection','stackedSection', bandpass fhi=20 --out=stdout ''') -atexit.register(after_build) - End() diff --git a/experiments/multiLayerModel/cre/SConstruct b/experiments/multiLayerModel/cre/SConstruct index 3f1beb9..cd821f2 100644 --- a/experiments/multiLayerModel/cre/SConstruct +++ b/experiments/multiLayerModel/cre/SConstruct @@ -22,93 +22,6 @@ from rsf.proj import * # Import glob python library import glob -import atexit -import os - -def after_build(): - os.system('sfrm crsParameters-m0*') - os.system('sfrm creMhCoordinates-m0*') - os.system('sfrm creMcoordinate-m0*') - os.system('sfrm creTimeCurveCube-m0*') - os.system('sfrm creGatherCube-m0*') - os.system('sfrm creTimeCurveCube-m0') - os.system('sfrm creGatherTrace-m0*') - os.system('sfrm creTimeCurveTrace-m0*') - os.system('sfrm creStackedTrace-m0*') - -# Recipes -from rsf.recipes.pefInterpolation import pefInterpolation as pef -from rsf.recipes.kimodel import multiLayerModel as mlmod -from rsf.recipes.kimodel import kirchhoffNewtonModeling as kinewmod - -# Establish building dependencies -Depends('interpolatedDataCube.rsf','multiLayerDataCube.rsf') -Depends('interpolatedDataCube2.rsf','interpolatedDataCube.rsf') -Depends('crsParameters-m0-0-t0-0.rsf','interpolatedDataCube2.rsf') - -xmax = 6.0 -zmax = 2.0 - -layers = ((0.30,0.50,0.20,0.30), - (1.65,1.85,1.55,1.65)) - -velocities = (1.508, - 1.690, - 2.0) - -# Generate multi layer model and data cube -mlmod(interfaces='interfaces', - dipsfile='interfacesDip', - modelfile='mod1', - xmax=xmax, - zmax=zmax, - layers=layers, - velocities=velocities) - -# Generate a modeled data cube -kinewmod(reflectors='interfaces', - reflectorsDip='interfacesDip', - filename='multiLayerDataCube', - velocities=velocities, - nt=1001, - dt=0.004, - ns=201, - ds=0.025, - nh=161, - dh=0.025) - -# PEF interpolation of the data cube -a1=10 -a2=2 -rect1=50 -rect2=2 - -pef(dataCube='multiLayerDataCube', - interpolated='interpolatedDataCube', - nm=201, - dm=0.025, - nt=1001, - dt=0.004, - nhi=161, - a1=a1, - a2=a2, - rect1=rect1, - rect2=rect2) - -# Do the PEF interpolation one more time -# to increase the CMP sampling -pef('interpolatedDataCube', - 'interpolatedDataCube2', - nm=402, - dm=0.0125, - nt=1001, - dt=0.004, - nhi=161, - a1=a1, - a2=a2, - rect1=rect1, - rect2=rect2) - # It uses Very Fast Simulated Aneeling and non hyperbolic CRS # to get zero offset CRS parameters (RN, RNIP and BETA) from data cube v0 = 1.5 @@ -118,7 +31,9 @@ nt0 = 2 om0 = 2 dm0 = 0.025 nm0 = 3 -dataCube='interpolatedDataCube2' +inputDir = '../../modelingAndPEFInterpolation/' +dataCube=inputDir+'multiLayerDataCube' +interpolatedDataCube=inputDir+'interpolatedDataCube2' for i in range(nm0): @@ -143,20 +58,20 @@ for i in range(nm0): creGatherPlot = 'crePlot-m0-%g-t0-%g' % (i,j) # Very Fast Simulated Aneelling Global Optimization (VFSA) - Flow(crsParameters,'interpolatedDataCube2', + Flow(crsParameters,dataCube, ''' vfsacrsnh m0=%g v0=%g t0=%g verb=y repeat=3 ''' % (m0,v0,t0)) # Calculate CRE trajectory - Flow(creMhCoordinates,['interpolatedDataCube2',crsParameters], + Flow(creMhCoordinates,[interpolatedDataCube,crsParameters], ''' cretrajec verb=y m0=%g param=${SOURCES[1]} | put unit1="Offset" label1="Km" ''' % (m0)) #Get CRE Gather from interpolated Data Cube - Flow([creGather,creMcoordinate],['interpolatedDataCube2',creMhCoordinates], + Flow([creGather,creMcoordinate],[interpolatedDataCube,creMhCoordinates], ''' getcregather aperture=50 verb=y cremh=${SOURCES[1]} m=${TARGETS[1]} aperture=20 | put label1="Time" unit1="s" label2="Offset" unit2="km" @@ -222,7 +137,7 @@ files = glob.glob('creStackedTrace-*.rsf') length = len(files) # Stacked section depends of the last CRE stacked trace -Depends('stackedSection.rsf',['multiLayerDataCube.rsf', +Depends('stackedSection.rsf',[dataCube, 'creStackedTrace-m0-'+str(nm0-1)+'.rsf', 'creGatherTrace-m0-'+str(nm0-1)+'.rsf']) @@ -241,6 +156,4 @@ Flow('filtStackedSection','stackedSection', bandpass fhi=20 --out=stdout ''') -atexit.register(after_build) - End() From 7677272798172acdab1afdaf07b7dd0f63e25c85 Mon Sep 17 00:00:00 2001 From: Hosgator VPS Date: Fri, 18 Sep 2020 19:29:00 -0300 Subject: [PATCH 12/17] Correct variable 'file' way to receive input #44 The variable 'file' was loaded before cre stacking loop. It used glob method to receive the stacked traces list available in the directory to sort and build the stacked section. The problem is if the variable is loaded before the loop, glob won't find any stacked traces, because they are not build already! So, in order to explicit tell scons to load 'files' variable after the loop, put the variable as an empty list and load the values during the for loop with append method --- .../fullInterpolationAndStack/SConstruct | 16 +++++++++------- .../fullInterpolationAndStackCDS/SConstruct | 17 ++++++++++------- experiments/multiLayerModel/cds/SConstruct | 14 ++++++++------ experiments/multiLayerModel/cre/SConstruct | 14 ++++++++------ 4 files changed, 35 insertions(+), 26 deletions(-) diff --git a/experiments/fullInterpolationAndStack/SConstruct b/experiments/fullInterpolationAndStack/SConstruct index 8a5a213..89c3876 100644 --- a/experiments/fullInterpolationAndStack/SConstruct +++ b/experiments/fullInterpolationAndStack/SConstruct @@ -33,8 +33,9 @@ om0 = 3 dm0 = 0.5 nm0 = 2 inputDir = '../modelingAndPEFInterpolation/' -datacube = inputdir+'dataCube' -interpolatedDataCube = inputDir+'interpolatedDataCube2' +dataCube = inputDir+'dataCube.rsf' +interpolatedDataCube = inputDir+'interpolatedDataCube2.rsf' +files = [] for i in range(nm0): @@ -132,16 +133,17 @@ for i in range(nm0): put label1=t0 unit1=s label2=m0 unit2=Km --out=stdout ''') -# Build the cre stacked section -# throughout cre stacked traces sorting -files = glob.glob('creStackedTrace-*.rsf') -length = len(files) + files.append(creStackedTrace) # Stacked section depends of the last CRE stacked trace -Depends('stackedSection.rsf',[dataCube.rsf, +Depends('stackedSection.rsf',[dataCube, 'creStackedTrace-m0-'+str(nm0-1)+'.rsf', 'creGatherTrace-m0-'+str(nm0-1)+'.rsf']) +# Build the cre stacked section +# throughout cre stacked traces sorting +length = len(files) + sortedFiles = [] for i in range(length): string = 'creStackedTrace-m0-%i.rsf' % i diff --git a/experiments/fullInterpolationAndStackCDS/SConstruct b/experiments/fullInterpolationAndStackCDS/SConstruct index fad4424..eb0df42 100644 --- a/experiments/fullInterpolationAndStackCDS/SConstruct +++ b/experiments/fullInterpolationAndStackCDS/SConstruct @@ -10,6 +10,7 @@ # traveltime approximation as stacking curve, with CDS condition (RNIP=RN) applied. # Instead of conventional CRE traveltime approximation. # +# # Site: https://dirack.github.io # # Version 2.0 @@ -37,8 +38,9 @@ om0 = 3 dm0 = 0.5 nm0 = 2 inputDir = '../modelingAndPEFInterpolation/' -datacube = inputdir+'dataCube' -interpolatedDataCube = inputDir+'interpolatedDataCube2' +dataCube = inputDir+'dataCube.rsf' +interpolatedDataCube = inputDir+'interpolatedDataCube2.rsf' +files = [] for i in range(nm0): @@ -136,16 +138,17 @@ for i in range(nm0): put label1=t0 unit1=s label2=m0 unit2=Km --out=stdout ''') -# Build the cre stacked section -# throughout cre stacked traces sorting -files = glob.glob('creStackedTrace-*.rsf') -length = len(files) + files.append(creStackedTrace) # Stacked section depends of the last CRE stacked trace -Depends('stackedSection.rsf',[dataCube.rsf, +Depends('stackedSection.rsf',[dataCube, 'creStackedTrace-m0-'+str(nm0-1)+'.rsf', 'creGatherTrace-m0-'+str(nm0-1)+'.rsf']) +# Build the cre stacked section +# throughout cre stacked traces sorting +length = len(files) + sortedFiles = [] for i in range(length): string = 'creStackedTrace-m0-%i.rsf' % i diff --git a/experiments/multiLayerModel/cds/SConstruct b/experiments/multiLayerModel/cds/SConstruct index 5d1f747..15e539b 100644 --- a/experiments/multiLayerModel/cds/SConstruct +++ b/experiments/multiLayerModel/cds/SConstruct @@ -36,8 +36,9 @@ om0 = 2 dm0 = 0.025 nm0 = 3 inputDir = '../../modelingAndPEFInterpolation/' -dataCube=inputDir+'multiLayerDataCube' -interpolatedDataCube=inputDir+'interpolatedDataCube2' +dataCube=inputDir+'multiLayerDataCube.rsf' +interpolatedDataCube=inputDir+'interpolatedDataCube2.rsf' +files = [] for i in range(nm0): @@ -135,16 +136,17 @@ for i in range(nm0): put label1=t0 unit1=s label2=m0 unit2=Km --out=stdout ''') -# Build the cre stacked section -# throughout cre stacked traces sorting -files = glob.glob('creStackedTrace-*.rsf') -length = len(files) + files.append(creStackedTrace) # Stacked section depends of the last CRE stacked trace Depends('stackedSection.rsf',[dataCube, 'creStackedTrace-m0-'+str(nm0-1)+'.rsf', 'creGatherTrace-m0-'+str(nm0-1)+'.rsf']) +# Build the cre stacked section +# throughout cre stacked traces sorting +length = len(files) + sortedFiles = [] for i in range(length): string = 'creStackedTrace-m0-%i.rsf' % i diff --git a/experiments/multiLayerModel/cre/SConstruct b/experiments/multiLayerModel/cre/SConstruct index cd821f2..6100d1a 100644 --- a/experiments/multiLayerModel/cre/SConstruct +++ b/experiments/multiLayerModel/cre/SConstruct @@ -32,8 +32,9 @@ om0 = 2 dm0 = 0.025 nm0 = 3 inputDir = '../../modelingAndPEFInterpolation/' -dataCube=inputDir+'multiLayerDataCube' -interpolatedDataCube=inputDir+'interpolatedDataCube2' +dataCube=inputDir+'multiLayerDataCube.rsf' +interpolatedDataCube=inputDir+'interpolatedDataCube2.rsf' +files = [] for i in range(nm0): @@ -131,16 +132,17 @@ for i in range(nm0): put label1=t0 unit1=s label2=m0 unit2=Km --out=stdout ''') -# Build the cre stacked section -# throughout cre stacked traces sorting -files = glob.glob('creStackedTrace-*.rsf') -length = len(files) + files.append(creStackedTrace) # Stacked section depends of the last CRE stacked trace Depends('stackedSection.rsf',[dataCube, 'creStackedTrace-m0-'+str(nm0-1)+'.rsf', 'creGatherTrace-m0-'+str(nm0-1)+'.rsf']) +# Build the cre stacked section +# throughout cre stacked traces sorting +length = len(files) + sortedFiles = [] for i in range(length): string = 'creStackedTrace-m0-%i.rsf' % i From 9c70a4e7967985a1206cb142c4baa777c30051de Mon Sep 17 00:00:00 2001 From: Hosgator VPS Date: Fri, 18 Sep 2020 19:56:00 -0300 Subject: [PATCH 13/17] Separate models SConscripts in different folders #44 To avoid problems and mixed outputs separate the models in two folders --- .../fullInterpolationAndStack/SConstruct | 2 +- .../fullInterpolationAndStackCDS/SConstruct | 2 +- .../{ => gaussianModel}/SConscript | 0 .../{ => gaussianModel}/kimodel.py | 0 .../{ => multiLayerModel}/SConscript2 | 0 .../multiLayerModel/kimodel.py | 57 +++++++++++++++++++ experiments/multiLayerModel/cds/SConstruct | 2 +- experiments/multiLayerModel/cre/SConstruct | 2 +- 8 files changed, 61 insertions(+), 4 deletions(-) rename experiments/modelingAndPEFInterpolation/{ => gaussianModel}/SConscript (100%) rename experiments/modelingAndPEFInterpolation/{ => gaussianModel}/kimodel.py (100%) rename experiments/modelingAndPEFInterpolation/{ => multiLayerModel}/SConscript2 (100%) create mode 100644 experiments/modelingAndPEFInterpolation/multiLayerModel/kimodel.py diff --git a/experiments/fullInterpolationAndStack/SConstruct b/experiments/fullInterpolationAndStack/SConstruct index 89c3876..96174e7 100644 --- a/experiments/fullInterpolationAndStack/SConstruct +++ b/experiments/fullInterpolationAndStack/SConstruct @@ -32,7 +32,7 @@ nt0 = 3 om0 = 3 dm0 = 0.5 nm0 = 2 -inputDir = '../modelingAndPEFInterpolation/' +inputDir = '../modelingAndPEFInterpolation/gaussianModel/' dataCube = inputDir+'dataCube.rsf' interpolatedDataCube = inputDir+'interpolatedDataCube2.rsf' files = [] diff --git a/experiments/fullInterpolationAndStackCDS/SConstruct b/experiments/fullInterpolationAndStackCDS/SConstruct index eb0df42..194a07c 100644 --- a/experiments/fullInterpolationAndStackCDS/SConstruct +++ b/experiments/fullInterpolationAndStackCDS/SConstruct @@ -37,7 +37,7 @@ nt0 = 3 om0 = 3 dm0 = 0.5 nm0 = 2 -inputDir = '../modelingAndPEFInterpolation/' +inputDir = '../modelingAndPEFInterpolation/gaussianModel/' dataCube = inputDir+'dataCube.rsf' interpolatedDataCube = inputDir+'interpolatedDataCube2.rsf' files = [] diff --git a/experiments/modelingAndPEFInterpolation/SConscript b/experiments/modelingAndPEFInterpolation/gaussianModel/SConscript similarity index 100% rename from experiments/modelingAndPEFInterpolation/SConscript rename to experiments/modelingAndPEFInterpolation/gaussianModel/SConscript diff --git a/experiments/modelingAndPEFInterpolation/kimodel.py b/experiments/modelingAndPEFInterpolation/gaussianModel/kimodel.py similarity index 100% rename from experiments/modelingAndPEFInterpolation/kimodel.py rename to experiments/modelingAndPEFInterpolation/gaussianModel/kimodel.py diff --git a/experiments/modelingAndPEFInterpolation/SConscript2 b/experiments/modelingAndPEFInterpolation/multiLayerModel/SConscript2 similarity index 100% rename from experiments/modelingAndPEFInterpolation/SConscript2 rename to experiments/modelingAndPEFInterpolation/multiLayerModel/SConscript2 diff --git a/experiments/modelingAndPEFInterpolation/multiLayerModel/kimodel.py b/experiments/modelingAndPEFInterpolation/multiLayerModel/kimodel.py new file mode 100644 index 0000000..2255f78 --- /dev/null +++ b/experiments/modelingAndPEFInterpolation/multiLayerModel/kimodel.py @@ -0,0 +1,57 @@ +#!/usr/bin/env python +# -*- coding: utf-8 -*- +# +# kimodel.py (Madagascar Recipe) +# +# Purpose: Recipe to Kirchhoff modeling of a gaussian reflector. +# +# Important!: It should be called from a SConstruct +# +# Site: https://dirack.github.io +# +# Version 2.0 +# +# Programer: Rodolfo A. C. Neves (Dirack) 04/03/2020 +# +# Email: rodolfo_profissional@hotmail.com +# +# License: GPL-3.0 . + +# Madagascar package +from rsf.proj import * + +def kirchoffModeling(filename='dataCube'): + ''' + Modeling function of a gaussian reflector + ''' + + # Modeling: Gaussian reflector in a velocity linear model + # velocity increases with depth with a 0.5 velocity gradient + Flow('gaussianReflector',None, + ''' + math d1=0.01 n1=2001 o1=-5 unit1=km label1=Offset + output="4-3*exp(-(x1-5)^2/9)" + ''') + + # Velocity Model + Flow('velocityModel','gaussianReflector', + ''' + window min1=0 max1=10 | + spray axis=1 n=451 d=0.01 o=0 label=Depth unit=km | + math output="1.5+0.5*x1+0.0*x2" + ''') + + Flow('reflectorDip','gaussianReflector','math output="2/3*(x1-5)*input" ') + + # Kirchoff Modeling + Flow(filename,'gaussianReflector reflectorDip', + ''' + kirmod cmp=y dip=${SOURCES[1]} + nh=161 dh=0.025 h0=0 + ns=401 ds=0.025 s0=0 + freq=10 dt=0.004 nt=1001 + vel=1.5 gradz=0.5 gradx=0.0 verb=y | + put d2=0.0125 label3="CMP" unit3="Km" label2="Offset" unit2="Km" label1=Time unit1=s + ''') + + diff --git a/experiments/multiLayerModel/cds/SConstruct b/experiments/multiLayerModel/cds/SConstruct index 15e539b..3fd816b 100644 --- a/experiments/multiLayerModel/cds/SConstruct +++ b/experiments/multiLayerModel/cds/SConstruct @@ -35,7 +35,7 @@ nt0 = 2 om0 = 2 dm0 = 0.025 nm0 = 3 -inputDir = '../../modelingAndPEFInterpolation/' +inputDir = '../../modelingAndPEFInterpolation/multiLayerModel/' dataCube=inputDir+'multiLayerDataCube.rsf' interpolatedDataCube=inputDir+'interpolatedDataCube2.rsf' files = [] diff --git a/experiments/multiLayerModel/cre/SConstruct b/experiments/multiLayerModel/cre/SConstruct index 6100d1a..a11d37d 100644 --- a/experiments/multiLayerModel/cre/SConstruct +++ b/experiments/multiLayerModel/cre/SConstruct @@ -31,7 +31,7 @@ nt0 = 2 om0 = 2 dm0 = 0.025 nm0 = 3 -inputDir = '../../modelingAndPEFInterpolation/' +inputDir = '../../modelingAndPEFInterpolation/multiLayerModel/' dataCube=inputDir+'multiLayerDataCube.rsf' interpolatedDataCube=inputDir+'interpolatedDataCube2.rsf' files = [] From d56a830e35a5ca31e628c3502613b518f3350459 Mon Sep 17 00:00:00 2001 From: Hosgator VPS Date: Fri, 18 Sep 2020 21:16:43 -0300 Subject: [PATCH 14/17] [Test] Simple test of the experiments tracked with scons #44 This SConstruct tracks the experiments execution and does an automatic report of then in latex. This is a simple test of the experiments with a few common offset gathers interpolated and a few cre stacked traces to build the stacked section --- experiments/SConstruct | 93 +++++++++++++++++++ .../multiLayerModel/SConscript2 | 4 +- 2 files changed, 95 insertions(+), 2 deletions(-) create mode 100644 experiments/SConstruct diff --git a/experiments/SConstruct b/experiments/SConstruct new file mode 100644 index 0000000..3334c1d --- /dev/null +++ b/experiments/SConstruct @@ -0,0 +1,93 @@ +#!/usr/bin/env python +# +# coding: utf-8 +# +# SConstruct (Madagascar Script) +# +# Purpose: Tracked build of the experiments in this directory and +# automatic report. +# +# Site: https://dirack.github.io +# +# Version 1.0 +# +# Programer: Rodolfo A C Neves (Dirack) 10/09/2020 +# +# Email: rodolfo_profissional@hotmail.com +# +# License: GPL-3.0 . + +from rsf.tex import * +from rsf.proj import Flow +import os +import logging +import tempfile + +env = Environment(ENV=os.environ) +env.AlwaysBuild('paper.tex') + +logfile = tempfile.mkstemp(suffix='.log')[1] + +logging.basicConfig(filename=logfile,level=logging.INFO, + format='%(asctime)s - %(levelname)s - %(message)s') + +logging.info('PSTA ***[Experiment Started]***') + +experiments = ['fullInterpolationAndStack', + 'fullInterpolationAndStackCDS', + 'multiLayerModel/cds', + 'multiLayerModel/cre'] +sconscripts = filter(os.path.isfile,map(lambda e: str(e)+'/SConstruct',experiments)) + +logging.debug('experiments = %s' % experiments) +logging.debug('sconscripts = %s' % sconscripts) + +succed=0 +fail=0 +total=len(experiments) + +for i in sconscripts: + try: + SConscript(i,exports='env') + logging.info("Experiment %s Succed!",i) + succed = succed + 1 + except: + logging.error("PERR Experiment %s Failed!",i) + fail = fail + 1 + currentExperimentDir = os.path.dirname(i) + logging.warning( + '''Experiment Failed - Show files list\n\t Files=> %s + ''', str(os.listdir(currentExperimentDir))) + + if os.path.isdir(currentExperimentDir+'/'+'Fig'): + logging.warning( + '''Experiment Failed - Show Fig list\n\t Fig=> %s + ''', str(os.listdir(currentExperimentDir+'/'+'Fig'))) + + # Try to run a BUGSCRIPT (This is a SConscript with another name + # to allow the experiment to do a set of commands if the build fails) + if os.path.isfile(currentExperimentDir+'/BUGSCRIPT'): + try: + SConscript(currentExperimentDir+'/BUGSCRIPT') + except: + logging.warning("BUGSCRIPT failed!") + +logging.info('PEND Total of '+str(fail+succed)+'/'+str(total)+' experiments executed, '+str(fail)+' failed and '+str(succed)+' succed') + +logging.disable(logging.CRITICAL) +Flow('paper.tex',None, + ''' + ./log2tex %s + ''' %(logfile)) + +End(options='reproduce', + include=r''' + \usepackage[utf8]{inputenc} + \usepackage{microtype} + \usepackage{listings} + \usepackage[left=2.5cm,top=2.5cm,right=2.5cm,bottom=2.5cm]{geometry} + \setlength{\parindent}{1.3cm} + \usepackage{color} + \definecolor{mygray}{rgb}{0.8,0.8,0.8} + \lstset{backgroundcolor=\color{mygray},breaklines=true} + ''') diff --git a/experiments/modelingAndPEFInterpolation/multiLayerModel/SConscript2 b/experiments/modelingAndPEFInterpolation/multiLayerModel/SConscript2 index eb0168e..317cf35 100644 --- a/experiments/modelingAndPEFInterpolation/multiLayerModel/SConscript2 +++ b/experiments/modelingAndPEFInterpolation/multiLayerModel/SConscript2 @@ -71,7 +71,7 @@ pef(dataCube='multiLayerDataCube', dm=0.025, nt=1001, dt=0.004, - nhi=161, + nhi=21, a1=a1, a2=a2, rect1=rect1, @@ -85,7 +85,7 @@ pef('interpolatedDataCube', dm=0.0125, nt=1001, dt=0.004, - nhi=161, + nhi=21, a1=a1, a2=a2, rect1=rect1, From 2196e5dad530bbeffc2f3d36af377bbb57906deb Mon Sep 17 00:00:00 2001 From: Hosgator VPS Date: Sat, 19 Sep 2020 16:01:28 -0300 Subject: [PATCH 15/17] Use AddPostAction and Shell Script to delete temp files #44 Use script 'clean.sh' to delete temporary files. The function AddPostAction will assure that clean.sh will be called after the 'interpolatedDataCube2.rsf' building --- .../gaussianModel/SConscript | 2 ++ .../gaussianModel/clean.sh | 23 +++++++++++++++++++ .../multiLayerModel/SConscript2 | 2 ++ .../multiLayerModel/clean.sh | 23 +++++++++++++++++++ 4 files changed, 50 insertions(+) create mode 100755 experiments/modelingAndPEFInterpolation/gaussianModel/clean.sh create mode 100755 experiments/modelingAndPEFInterpolation/multiLayerModel/clean.sh diff --git a/experiments/modelingAndPEFInterpolation/gaussianModel/SConscript b/experiments/modelingAndPEFInterpolation/gaussianModel/SConscript index a62088f..521c368 100644 --- a/experiments/modelingAndPEFInterpolation/gaussianModel/SConscript +++ b/experiments/modelingAndPEFInterpolation/gaussianModel/SConscript @@ -68,4 +68,6 @@ pef('interpolatedDataCube', rect2=rect2 ) +AddPostAction('interpolatedDataCube2.rsf',"./clean.sh") + End() diff --git a/experiments/modelingAndPEFInterpolation/gaussianModel/clean.sh b/experiments/modelingAndPEFInterpolation/gaussianModel/clean.sh new file mode 100755 index 0000000..a47151a --- /dev/null +++ b/experiments/modelingAndPEFInterpolation/gaussianModel/clean.sh @@ -0,0 +1,23 @@ +#!/bin/bash +# +# clean.sh (Shell Script) +# +# Purpose: Clean temporary files after build. +# +# Site: https://dirack.github.io +# +# Version 1.0 +# +# Programer: Rodolfo A C Neves (Dirack) 19/09/2020 +# +# Email: rodolfo_profissional@hotmail.com +# +# License: GPL-3.0 . + +TMP='gaussianReflector.rsf reflectorDip.rsf dataCube-offsetGather-* dataCube-interpolatedGather-* dataCube-pefCoeficients-* dataCube-resampledGather-* interpolatedDataCube-offsetGather-* interpolatedDataCube-interpolatedGather-* interpolatedDataCube-pefCoeficients-* interpolatedDataCube-resampledGather-* dataCube-a* dataCube-b* *-mask* interpolatedDataCube-a* interpolatedDataCube-b* *-zeroedGather*' + +for i in $TMP +do + $RSFROOT/bin/sfrm "$i" + #echo "$i" +done diff --git a/experiments/modelingAndPEFInterpolation/multiLayerModel/SConscript2 b/experiments/modelingAndPEFInterpolation/multiLayerModel/SConscript2 index 317cf35..15f29eb 100644 --- a/experiments/modelingAndPEFInterpolation/multiLayerModel/SConscript2 +++ b/experiments/modelingAndPEFInterpolation/multiLayerModel/SConscript2 @@ -91,4 +91,6 @@ pef('interpolatedDataCube', rect1=rect1, rect2=rect2) +AddPostAction('interpolatedDataCube2.rsf',"./clean.sh") + End() diff --git a/experiments/modelingAndPEFInterpolation/multiLayerModel/clean.sh b/experiments/modelingAndPEFInterpolation/multiLayerModel/clean.sh new file mode 100755 index 0000000..d7d91af --- /dev/null +++ b/experiments/modelingAndPEFInterpolation/multiLayerModel/clean.sh @@ -0,0 +1,23 @@ +#!/bin/bash +# +# clean.sh (Shell Script) +# +# Purpose: Clean temporary files after build. +# +# Site: https://dirack.github.io +# +# Version 1.0 +# +# Programer: Rodolfo A C Neves (Dirack) 19/09/2020 +# +# Email: rodolfo_profissional@hotmail.com +# +# License: GPL-3.0 . + +TMP='gaussianReflector.rsf reflectorDip.rsf multiLayerDataCube-offsetGather-* multiLayerDataCube-interpolatedGather-* multiLayerDataCube-pefCoeficients-* multiLayerDataCube-resampledGather-* interpolatedDataCube-offsetGather-* interpolatedDataCube-interpolatedGather-* interpolatedDataCube-pefCoeficients-* interpolatedDataCube-resampledGather-* multiLayerDataCube-a* multiLayerDataCube-b* *-mask* interpolatedDataCube-a* interpolatedDataCube-b* *-zeroedGather*' + +for i in $TMP +do + $RSFROOT/bin/sfrm "$i" + #echo "$i" +done From 59e2414f7ce674655f997bbaee26ffd9702af224 Mon Sep 17 00:00:00 2001 From: Hosgator VPS Date: Sat, 19 Sep 2020 18:02:03 -0300 Subject: [PATCH 16/17] [TEST] Test of modeling and PEF interpolation step #44 The 'test_modelBuild.py' file tun the unit tests of the modeling and PEF interpolation steps that will produce the input to the CRE stacking step. Run this test with: ~$ python -m unittest test_modelBuild --- experiments/SConstruct | 6 +- .../fullInterpolationAndStack/SConstruct | 4 +- .../fullInterpolationAndStackCDS/SConstruct | 4 +- .../gaussianModel/{SConscript => SConstruct} | 2 +- .../{SConscript2 => SConstruct} | 2 +- .../test_modelBuild.py | 58 +++++++++++++++++++ experiments/multiLayerModel/cds/SConstruct | 6 +- experiments/multiLayerModel/cre/SConstruct | 8 +-- 8 files changed, 74 insertions(+), 16 deletions(-) rename experiments/modelingAndPEFInterpolation/gaussianModel/{SConscript => SConstruct} (97%) rename experiments/modelingAndPEFInterpolation/multiLayerModel/{SConscript2 => SConstruct} (98%) create mode 100644 experiments/modelingAndPEFInterpolation/test_modelBuild.py diff --git a/experiments/SConstruct b/experiments/SConstruct index 3334c1d..25c05bd 100644 --- a/experiments/SConstruct +++ b/experiments/SConstruct @@ -33,9 +33,9 @@ logging.basicConfig(filename=logfile,level=logging.INFO, logging.info('PSTA ***[Experiment Started]***') -experiments = ['fullInterpolationAndStack', - 'fullInterpolationAndStackCDS', - 'multiLayerModel/cds', +#experiments = ['fullInterpolationAndStack', +# 'fullInterpolationAndStackCDS', +experiments = [ 'multiLayerModel/cds', 'multiLayerModel/cre'] sconscripts = filter(os.path.isfile,map(lambda e: str(e)+'/SConstruct',experiments)) diff --git a/experiments/fullInterpolationAndStack/SConstruct b/experiments/fullInterpolationAndStack/SConstruct index 96174e7..4de1269 100644 --- a/experiments/fullInterpolationAndStack/SConstruct +++ b/experiments/fullInterpolationAndStack/SConstruct @@ -28,10 +28,10 @@ import glob v0 = 1.5 ot0 = 1.0 dt0 = 0.004 -nt0 = 3 +nt0 = 500 om0 = 3 dm0 = 0.5 -nm0 = 2 +nm0 = 9 inputDir = '../modelingAndPEFInterpolation/gaussianModel/' dataCube = inputDir+'dataCube.rsf' interpolatedDataCube = inputDir+'interpolatedDataCube2.rsf' diff --git a/experiments/fullInterpolationAndStackCDS/SConstruct b/experiments/fullInterpolationAndStackCDS/SConstruct index 194a07c..5179dac 100644 --- a/experiments/fullInterpolationAndStackCDS/SConstruct +++ b/experiments/fullInterpolationAndStackCDS/SConstruct @@ -33,10 +33,10 @@ import glob v0 = 1.5 ot0 = 1.0 dt0 = 0.004 -nt0 = 3 +nt0 = 500 om0 = 3 dm0 = 0.5 -nm0 = 2 +nm0 = 9 inputDir = '../modelingAndPEFInterpolation/gaussianModel/' dataCube = inputDir+'dataCube.rsf' interpolatedDataCube = inputDir+'interpolatedDataCube2.rsf' diff --git a/experiments/modelingAndPEFInterpolation/gaussianModel/SConscript b/experiments/modelingAndPEFInterpolation/gaussianModel/SConstruct similarity index 97% rename from experiments/modelingAndPEFInterpolation/gaussianModel/SConscript rename to experiments/modelingAndPEFInterpolation/gaussianModel/SConstruct index 521c368..9615f7d 100644 --- a/experiments/modelingAndPEFInterpolation/gaussianModel/SConscript +++ b/experiments/modelingAndPEFInterpolation/gaussianModel/SConstruct @@ -1,7 +1,7 @@ #!/usr/bin/env python # -*- coding: utf-8 -*- # -# SConscript (Madagascar Script) +# SConstruct (Madagascar Script) # # Purpose: Kirchhoff modeling of a gaussian reflector in a linear velocity model # and PEF interpolation of the seismic data cube (Time x Offset x CMP) to increase diff --git a/experiments/modelingAndPEFInterpolation/multiLayerModel/SConscript2 b/experiments/modelingAndPEFInterpolation/multiLayerModel/SConstruct similarity index 98% rename from experiments/modelingAndPEFInterpolation/multiLayerModel/SConscript2 rename to experiments/modelingAndPEFInterpolation/multiLayerModel/SConstruct index 15f29eb..f992703 100644 --- a/experiments/modelingAndPEFInterpolation/multiLayerModel/SConscript2 +++ b/experiments/modelingAndPEFInterpolation/multiLayerModel/SConstruct @@ -1,7 +1,7 @@ #!/usr/bin/env python # -*- coding: utf-8 -*- # -# SConscript (Madagascar Script) +# SConstruct (Madagascar Script) # # Purpose: Kirchhoff Newton modeling of a multi layer velocity model. # diff --git a/experiments/modelingAndPEFInterpolation/test_modelBuild.py b/experiments/modelingAndPEFInterpolation/test_modelBuild.py new file mode 100644 index 0000000..9ef0b4e --- /dev/null +++ b/experiments/modelingAndPEFInterpolation/test_modelBuild.py @@ -0,0 +1,58 @@ +#!/usr/bin/env python +# -*- coding: utf-8 -*- +# +# test_modelBuild.py (Python) +# +# Purpose: Test model building with SCons. +# +# Rum with: python -m unittest test_modelBuild +# +# Site: https://dirack.github.io +# +# Version 2.0 +# +# Programer: Rodolfo A. C. Neves (Dirack) 04/03/2020 +# +# Email: rodolfo_profissional@hotmail.com +# +# License: GPL-3.0 . + +import unittest +import subprocess + +class TestScons(unittest.TestCase): + ''' + Unit tests of the model building + ''' + + def test_gaussianReflectorModeling(self): + ''' + Test the building of the gaussian reflector in + a linear velocity model + ''' + result = subprocess.call('cd gaussianModel && scons dataCube.rsf',shell=True) + self.assertEqual(result,0,'FAILED: gaussian reflector modeling failed!') + + + def test_gaussianReflectorPefInterpolation(self): + ''' + Test of the PEF interpolation step of the seismic data cube + modeled with the gaussian reflector linear velocity model. + ''' + result = subprocess.call('cd gaussianModel && scons -j3',shell=True) + self.assertEqual(result,0,'FAILED: gaussian reflector PEF interpolation failed!') + + def test_multiLayerModeling(self): + ''' + Test of the building of the multi layer model + ''' + result = subprocess.call('cd multiLayerModel && scons multiLayerDataCube.rsf',shell=True) + self.assertEqual(result,0,'FAILED: multi Layer modeling failed!') + + def test_multiLayerPefInterpolation(self): + ''' + Test of the PEF interpolation step of the seimic data cube + modeled with the multi layer model + ''' + result = subprocess.call('cd multiLayerModel && scons -j3',shell=True) + self.assertEqual(result,0,'FAILED: multi layer PEF interpolation failed!') diff --git a/experiments/multiLayerModel/cds/SConstruct b/experiments/multiLayerModel/cds/SConstruct index 3fd816b..2ddea89 100644 --- a/experiments/multiLayerModel/cds/SConstruct +++ b/experiments/multiLayerModel/cds/SConstruct @@ -31,10 +31,10 @@ import glob v0 = 1.5 ot0 = 0.3 dt0 = 0.008 -nt0 = 2 +nt0 = 331 om0 = 2 -dm0 = 0.025 -nm0 = 3 +dm0 = 0.25 +nm0 = 8 inputDir = '../../modelingAndPEFInterpolation/multiLayerModel/' dataCube=inputDir+'multiLayerDataCube.rsf' interpolatedDataCube=inputDir+'interpolatedDataCube2.rsf' diff --git a/experiments/multiLayerModel/cre/SConstruct b/experiments/multiLayerModel/cre/SConstruct index a11d37d..9395bdd 100644 --- a/experiments/multiLayerModel/cre/SConstruct +++ b/experiments/multiLayerModel/cre/SConstruct @@ -27,11 +27,11 @@ import glob v0 = 1.5 ot0 = 0.3 dt0 = 0.008 -nt0 = 2 +nt0 = 331 om0 = 2 -dm0 = 0.025 -nm0 = 3 -inputDir = '../../modelingAndPEFInterpolation/multiLayerModel/' +dm0 = 0.25 +nm0 = 8 +inputDir= '../../modelingAndPEFInterpolation/multiLayerModel/' dataCube=inputDir+'multiLayerDataCube.rsf' interpolatedDataCube=inputDir+'interpolatedDataCube2.rsf' files = [] From 51fb542d00bb1810958fe48571a8fbc0291b39c3 Mon Sep 17 00:00:00 2001 From: Hosgator VPS Date: Sat, 19 Sep 2020 20:32:52 -0300 Subject: [PATCH 17/17] [TEST] Unit test of the experiments #44 Tests of the experiments. Run with: ~$ python -m unittest test_experiments --- .../multiLayerModel/clean.sh | 4 +- experiments/test_experiments.py | 54 +++++++++++++++++++ 2 files changed, 57 insertions(+), 1 deletion(-) create mode 100644 experiments/test_experiments.py diff --git a/experiments/modelingAndPEFInterpolation/multiLayerModel/clean.sh b/experiments/modelingAndPEFInterpolation/multiLayerModel/clean.sh index d7d91af..5a5e86c 100755 --- a/experiments/modelingAndPEFInterpolation/multiLayerModel/clean.sh +++ b/experiments/modelingAndPEFInterpolation/multiLayerModel/clean.sh @@ -14,10 +14,12 @@ # # License: GPL-3.0 . -TMP='gaussianReflector.rsf reflectorDip.rsf multiLayerDataCube-offsetGather-* multiLayerDataCube-interpolatedGather-* multiLayerDataCube-pefCoeficients-* multiLayerDataCube-resampledGather-* interpolatedDataCube-offsetGather-* interpolatedDataCube-interpolatedGather-* interpolatedDataCube-pefCoeficients-* interpolatedDataCube-resampledGather-* multiLayerDataCube-a* multiLayerDataCube-b* *-mask* interpolatedDataCube-a* interpolatedDataCube-b* *-zeroedGather*' +TMP='interfaces.rsf interfacesDip.rsf mod1.rsf layers.rsf multiLayerDataCube-offsetGather-* multiLayerDataCube-interpolatedGather-* multiLayerDataCube-pefCoeficients-* multiLayerDataCube-resampledGather-* interpolatedDataCube-offsetGather-* interpolatedDataCube-interpolatedGather-* interpolatedDataCube-pefCoeficients-* interpolatedDataCube-resampledGather-* multiLayerDataCube-a* multiLayerDataCube-b* *-mask* interpolatedDataCube-a* interpolatedDataCube-b* *-zeroedGather*' for i in $TMP do $RSFROOT/bin/sfrm "$i" #echo "$i" done + +rm layers.asc diff --git a/experiments/test_experiments.py b/experiments/test_experiments.py new file mode 100644 index 0000000..270cfc3 --- /dev/null +++ b/experiments/test_experiments.py @@ -0,0 +1,54 @@ +#!/usr/bin/env python +# -*- coding: utf-8 -*- +# +# test_experiments.py (Python) +# +# Purpose: Test model building with SCons. +# +# Rum with: python -m unittest test_experiments +# +# Site: https://dirack.github.io +# +# Version 2.0 +# +# Programer: Rodolfo A. C. Neves (Dirack) 04/03/2020 +# +# Email: rodolfo_profissional@hotmail.com +# +# License: GPL-3.0 . + +import unittest +import subprocess + +class TestScons(unittest.TestCase): + ''' + Test of the experiments + ''' + + def test_fullInterpolationAndStack(self): + ''' + Unit test of the fullInterpolationAndStack experiment + ''' + result = subprocess.call('cd fullInterpolationAndStack && scons -j3',shell=True) + self.assertEqual(result,0,'FAILED: experiment fullInterpolationAndStack failed!') + + def test_fullInterpolationAndStackCDS(self): + ''' + Unit test of the fullInterpolationAndStackCDS experiment + ''' + result = subprocess.call('cd fullInterpolationAndStackCDS && scons -j3',shell=True) + self.assertEqual(result,0,'FAILED: experiment fullInterpolationAndStackCDS failed!') + + def test_multiLayerModel(self): + ''' + Unit test of the multiLayerModel experiment + ''' + result = subprocess.call('cd multiLayerModel/cre && scons -j3',shell=True) + self.assertEqual(result,0,'FAILED: experiment multiLayerModel failed!') + + def test_multiLayerModelCDS(self): + ''' + Unit test of the multiLayerModel CDS experiment + ''' + result = subprocess.call('cd multiLayerModel/cds && scons -j3',shell=True) + self.assertEqual(result,0,'FAILED: experiment multiLayerModel CDS failed!')