update extract_particles CLI

j-c-c · j-c-c · commit 38069c057c26 · 2025-10-17T13:20:51.000-04:00
diff --git a/src/aspire/commands/extract_particles.py b/src/aspire/commands/extract_particles.py
@@ -140,14 +140,14 @@ def extract_particles(
             )
         src = CentersCoordinateSource(
             files,
+            pixel_size,
             particle_size=particle_size,
-            pixel_size=pixel_size,
         )
     else:
         src = BoxesCoordinateSource(
             files,
+            pixel_size,
             particle_size=particle_size,
-            pixel_size=pixel_size,
         )
 
     # optional preprocessing steps

Original file line number	Diff line number	Diff line change
`@@ -140,14 +140,14 @@ def extract_particles(`
`140`	`140`	`)`
`141`	`141`	`src = CentersCoordinateSource(`
`142`	`142`	`files,`
	`143`	`+ pixel_size,`
`143`	`144`	`particle_size=particle_size,`
`144`		`- pixel_size=pixel_size,`
`145`	`145`	`)`
`146`	`146`	`else:`
`147`	`147`	`src = BoxesCoordinateSource(`
`148`	`148`	`files,`
	`149`	`+ pixel_size,`
`149`	`150`	`particle_size=particle_size,`
`150`		`- pixel_size=pixel_size,`
`151`	`151`	`)`
`152`	`152`
`153`	`153`	`# optional preprocessing steps`