Added lots of classes for new ML API:

Abstract classes for learning algorithms:
* Classifier
* Regressor
* Predictor

Traits for learning algorithms
* HasDefaultEstimator
* IterativeEstimator
* IterativeSolver
* ProbabilisticClassificationModel
* WeakLearner

Concrete classes: learning algorithms
* AdaBoost (partly implemented)
* NaiveBayes (rough implementation)
* LinearRegression
* LogisticRegression (updated to use new abstract classes)

Concrete classes: evaluation
* ClassificationEvaluator
* RegressionEvaluator
* PredictionEvaluator

Concrete classes: other
* LabeledPoint (adding weight to the old LabeledPoint)

Author: jkbradley

mllib/src/main/scala/org/apache/spark/ml/LabeledPoint.scala

@@ -0,0 +1,24 @@
+package org.apache.spark.ml
+
+import org.apache.spark.mllib.linalg.Vector
+
+/**
+ * Class that represents an instance (data point) for prediction tasks.
+ *
+ * @param label Label to predict
+ * @param features List of features describing this instance
+ * @param weight Instance weight
+ */
+case class LabeledPoint(label: Double, features: Vector, weight: Double) {
+
+  /** Default constructor which sets instance weight to 1.0 */
+  def this(label: Double, features: Vector) = this(label, features, 1.0)
+
+  override def toString: String = {
+    "(%s,%s,%s)".format(label, features, weight)
+  }
+}
+
+object LabeledPoint {
+  def apply(label: Double, features: Vector) = new LabeledPoint(label, features)
+}

mllib/src/main/scala/org/apache/spark/ml/classification/AdaBoost.scala

@@ -0,0 +1,208 @@
+package org.apache.spark.ml.classification
+
+import scala.collection.mutable.ArrayBuffer
+
+import org.apache.spark.rdd.RDD
+import org.apache.spark.sql._
+import org.apache.spark.mllib.linalg.{Vectors, Vector}
+import org.apache.spark.ml.LabeledPoint
+import org.apache.spark.ml.evaluation.ClassificationEvaluator
+import org.apache.spark.ml.param.{HasWeightCol, Param, ParamMap, HasMaxIter}
+import org.apache.spark.ml.impl.estimator.{ProbabilisticClassificationModel, WeakLearner,
+  IterativeEstimator, IterativeSolver}
+
+
+private[classification] trait AdaBoostParams extends ClassifierParams
+  with HasMaxIter with HasWeightCol {
+
+  /** param for weak learner type */
+  val weakLearner: Param[Classifier[_, _]] =
+    new Param(this, "weakLearner", "weak learning algorithm")
+  def getWeakLearner: Classifier[_, _] = get(weakLearner)
+
+  /** param for weak learner param maps */
+  val weakLearnerParamMap: Param[ParamMap] =
+    new Param(this, "weakLearnerParamMap", "param map for the weak learner")
+  def getWeakLearnerParamMap: ParamMap = get(weakLearnerParamMap)
+
+  override def validate(paramMap: ParamMap): Unit = {
+    // TODO: Check maxIter, weakLearner, weakLearnerParamMap, weightCol
+    // Check: If the weak learner does not extend WeakLearner, then featuresColName should be
+    //        castable to FeaturesType.
+  }
+}
+
+
+/**
+ * AdaBoost
+ *
+ * Developer notes:
+ *  - If the weak learner implements the [[WeakLearner]]
+ */
+class AdaBoost extends Classifier[AdaBoost, AdaBoostModel]
+  with AdaBoostParams
+  with IterativeEstimator[AdaBoostModel] {
+
+  def setMaxIter(value: Int): this.type = set(maxIter, value)
+  def setWeightCol(value: String): this.type = set(weightCol, value)
+  def setWeakLearner(value: Classifier[_, _]): this.type = set(weakLearner, value)
+  def setWeakLearnerParamMap(value: ParamMap): this.type = set(weakLearnerParamMap, value)
+
+  /**
+   * Extract LabeledPoints, using the weak learner's native feature representation if possible.
+   * @param paramMap  Complete paramMap (after combining with the internal paramMap)
+   */
+  private def extractLabeledPoints(dataset: SchemaRDD, paramMap: ParamMap): RDD[LabeledPoint] = {
+    import dataset.sqlContext._
+    val featuresColName = paramMap(featuresCol)
+    val wl = paramMap(weakLearner)
+    val featuresRDD: RDD[Vector] = wl match {
+      case wlTagged: WeakLearner =>
+        val wlParamMap = paramMap(weakLearnerParamMap)
+        val wlFeaturesColName = wlParamMap(wl.featuresCol)
+        val origFeaturesRDD = dataset.select(featuresColName.attr).as(wlFeaturesColName.attr)
+        wlTagged.getNativeFeatureRDD(origFeaturesRDD, wlParamMap)
+      case _ =>
+        dataset.select(featuresColName.attr).map { case Row(features: Vector) => features }
+    }
+
+    val labelColName = paramMap(labelCol)
+    if (paramMap.contains(weightCol)) {
+      val weightColName = paramMap(weightCol)
+      dataset.select(labelColName.attr, weightColName.attr)
+        .zip(featuresRDD).map { case (Row(label: Double, weight: Double), features: Vector) =>
+        LabeledPoint(label, features, weight)
+      }
+    } else {
+      dataset.select(labelColName.attr)
+        .zip(featuresRDD).map { case (Row(label: Double), features: Vector) =>
+        LabeledPoint(label, features)
+      }
+    }
+  }
+
+  // From Classifier
+  override def fit(dataset: SchemaRDD, paramMap: ParamMap): AdaBoostModel = {
+    val map = this.paramMap ++ paramMap
+    val labeledPoints: RDD[LabeledPoint] = extractLabeledPoints(dataset, map)
+    train(labeledPoints, paramMap)
+  }
+
+  // From IterativeEstimator
+  override private[ml] def createSolver(dataset: SchemaRDD, paramMap: ParamMap): AdaBoostSolver = {
+    val map = this.paramMap ++ paramMap
+    val labeledPoints: RDD[LabeledPoint] = extractLabeledPoints(dataset, map)
+    new AdaBoostSolver(labeledPoints, this, map)
+  }
+
+  // From Predictor
+  override def train(dataset: RDD[LabeledPoint], paramMap: ParamMap): AdaBoostModel = {
+    val map = this.paramMap ++ paramMap
+    val solver = new AdaBoostSolver(dataset, this, map)
+    while (solver.step()) { }
+    solver.currentModel
+  }
+}
+
+
+class AdaBoostModel private[ml] (
+    val weakHypotheses: Array[ClassificationModel[_]],
+    val weakHypothesisWeights: Array[Double],
+    override val parent: AdaBoost,
+    override val fittingParamMap: ParamMap)
+  extends ClassificationModel[AdaBoostModel]
+  with ProbabilisticClassificationModel
+  with AdaBoostParams {
+
+  require(weakHypotheses.size != 0)
+  require(weakHypotheses.size == weakHypothesisWeights.size)
+
+  // From Classifier.Model:
+  override val numClasses: Int = weakHypotheses(0).numClasses
+
+  require(weakHypotheses.forall(_.numClasses == numClasses))
+
+  private val margin: Vector => Double = (features) => {
+    weakHypotheses.zip(weakHypothesisWeights)
+      .foldLeft(0.0) { case (total: Double, (wh: ClassificationModel[_], weight: Double)) =>
+      val pred = if (wh.predict(features) == 1.0) 1.0 else -1.0
+      total + weight * pred
+    }
+  }
+
+  private val score: Vector => Double = (features) => {
+    val m = margin(features)
+    1.0 / (1.0 + math.exp(-2.0 * m))
+  }
+
+  override def predictProbabilities(features: Vector): Vector = {
+    val s = score(features)
+    Vectors.dense(Array(1.0 - s, s))
+  }
+
+  override def predictRaw(features: Vector): Vector = {
+    val m = margin(features)
+    Vectors.dense(Array(-m, m))
+  }
+}
+
+
+private[ml] class AdaBoostSolver(
+    val origData: RDD[LabeledPoint],
+    val parent: AdaBoost,
+    val paramMap: ParamMap) extends IterativeSolver[AdaBoostModel] {
+
+  private val weakHypotheses = new ArrayBuffer[ClassificationModel[_]]
+  private val weakHypothesisWeights = new ArrayBuffer[Double]
+
+  private val wl: Classifier[_, _] = paramMap(parent.weakLearner)
+  private val wlParamMap = paramMap(parent.weakLearnerParamMap)
+  override val maxIterations: Int = paramMap(parent.maxIter)
+
+  // TODO: Decide if this alg should cache data, or if that should be left to the user.
+
+  // TODO: check for weights = 0
+  // TODO: EDITING HERE NOW: switch to log weights
+  private var logInstanceWeights: RDD[Double] = origData.map(lp => math.log(lp.weight))
+
+  override def stepImpl(): Boolean = ??? /*{
+    // Check if the weak learner takes instance weights.
+    val wlDataset = wl match {
+      case wlWeighted: HasWeightCol =>
+        origData.zip(logInstanceWeights).map { case (lp: LabeledPoint, logWeight: Double) =>
+          LabeledPoint(lp.label, lp.features, weight)
+        }
+      case _ =>
+        // Subsample data to simulate the current instance weight distribution.
+        // TODO: This needs to be done before AdaBoost is committed.
+        throw new NotImplementedError(
+          "AdaBoost currently requires that the weak learning algorithm accept instance weights.")
+    }
+    // Train the weak learning algorithm.
+    val weakHypothesis: ClassificationModel[_] = wl match {
+      case wlTagged: WeakLearner[_] =>
+        // This lets the weak learner know that the features are in its native format.
+        wlTagged.trainNative(wlDataset, wlParamMap).asInstanceOf[ClassificationModel[_]]
+      case _ =>
+        wl.train(wlDataset, wlParamMap).asInstanceOf[ClassificationModel[_]]
+    }
+    // Add the weighted weak hypothesis to the ensemble.
+    // TODO: Handle instance weights.
+    val predictionsAndLabels = wlDataset.map(lp => weakHypothesis.predict(lp.features))
+      .zip(wlDataset.map(_.label))
+    val eps = ClassificationEvaluator.computeMetric(predictionsAndLabels, "accuracy")
+    val alpha = 0.5 * (math.log(1.0 - eps) - math.log(eps)) // TODO: handle eps near 0
+    weakHypotheses += weakHypothesis
+    weakHypothesisWeights += alpha
+    // Update weights.
+    val newInstanceWeights = instanceWeights.zip(predictionsAndLabels).map {
+      case (weight: Double, (pred: Double, label: Double)) =>
+        ???
+    }
+
+  }*/
+
+  override def currentModel: AdaBoostModel = {
+    new AdaBoostModel(weakHypotheses.toArray, weakHypothesisWeights.toArray, parent, paramMap)
+  }
+}

mllib/src/main/scala/org/apache/spark/ml/classification/Classifier.scala

@@ -0,0 +1,73 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one or more
+ * contributor license agreements.  See the NOTICE file distributed with
+ * this work for additional information regarding copyright ownership.
+ * The ASF licenses this file to You under the Apache License, Version 2.0
+ * (the "License"); you may not use this file except in compliance with
+ * the License.  You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+package org.apache.spark.ml.classification
+
+import org.apache.spark.annotation.AlphaComponent
+import org.apache.spark.ml.evaluation.ClassificationEvaluator
+import org.apache.spark.mllib.linalg.Vector
+import org.apache.spark.ml._
+import org.apache.spark.ml.impl.estimator.{HasDefaultEvaluator, PredictionModel, Predictor,
+  PredictorParams}
+import org.apache.spark.rdd.RDD
+
+@AlphaComponent
+private[classification] trait ClassifierParams extends PredictorParams
+
+/**
+ * Single-label binary or multiclass classification
+ */
+abstract class Classifier[Learner <: Classifier[Learner, M], M <: ClassificationModel[M]]
+  extends Predictor[Learner, M]
+  with ClassifierParams
+  with HasDefaultEvaluator {
+
+  override def defaultEvaluator: Evaluator = new ClassificationEvaluator
+}
+
+
+private[ml] abstract class ClassificationModel[M <: ClassificationModel[M]]
+  extends PredictionModel[M] with ClassifierParams {
+
+  def numClasses: Int
+
+  /**
+   * Predict label for the given features.  Labels are indexed {0, 1, ..., numClasses - 1}.
+   * This default implementation for classification predicts the index of the maximum value
+   * from [[predictRaw()]].
+   */
+  override def predict(features: Vector): Double = {
+    predictRaw(features).toArray.zipWithIndex.maxBy(_._1)._2
+  }
+
+  /**
+   * Raw prediction for each possible label
+   * @return  vector where element i is the raw score for label i
+   */
+  def predictRaw(features: Vector): Vector
+
+  /**
+   * Compute this model's accuracy on the given dataset.
+   */
+  def accuracy(dataset: RDD[LabeledPoint]): Double = {
+    // TODO: Handle instance weights.
+    val predictionsAndLabels = dataset.map(lp => predict(lp.features))
+      .zip(dataset.map(_.label))
+    ClassificationEvaluator.computeMetric(predictionsAndLabels, "accuracy")
+  }
+
+}