[SPARK-8850] [SQL] Enable Unsafe mode by default

This pull request enables Unsafe mode by default in Spark SQL. In order to do this, we had to fix a number of small issues:

**List of fixed blockers**:

- [x] Make some default buffer sizes configurable so that HiveCompatibilitySuite can run properly (apache#7741).
- [x] Memory leak on grouped aggregation of empty input (fixed by apache#7560 to fix this)
- [x] Update planner to also check whether codegen is enabled before planning unsafe operators.
- [x] Investigate failing HiveThriftBinaryServerSuite test.  This turns out to be caused by a ClassCastException that occurs when Exchange tries to apply an interpreted RowOrdering to an UnsafeRow when range partitioning an RDD.  This could be fixed by apache#7408, but a shorter-term fix is to just skip the Unsafe exchange path when RangePartitioner is used.
- [x] Memory leak exceptions masking exceptions that actually caused tasks to fail (will be fixed by apache#7603).
- [x]  ~~https://issues.apache.org/jira/browse/SPARK-9162, to implement code generation for ScalaUDF.  This is necessary for `UDFSuite` to pass.  For now, I've just ignored this test in order to try to find other problems while we wait for a fix.~~ This is no longer necessary as of apache#7682.
- [x] Memory leaks from Limit after UnsafeExternalSort cause the memory leak detector to fail tests. This is a huge problem in the HiveCompatibilitySuite (fixed by f4ac642a4e5b2a7931c5e04e086bb10e263b1db6).
- [x] Tests in `AggregationQuerySuite` are failing due to NaN-handling issues in UnsafeRow, which were fixed in apache#7736.
- [x] `org.apache.spark.sql.ColumnExpressionSuite.rand` needs to be updated so that the planner check also matches `TungstenProject`.
- [x] After having lowered the buffer sizes to 4MB so that most of HiveCompatibilitySuite runs:
  - [x] Wrong answer in `join_1to1` (fixed by apache#7680)
  - [x] Wrong answer in `join_nulls` (fixed by apache#7680)
  - [x] Managed memory OOM / leak in `lateral_view`
  - [x] Seems to hang indefinitely in `partcols1`.  This might be a deadlock in script transformation or a bug in error-handling code? The hang was fixed by apache#7710.
  - [x] Error while freeing memory in `partcols1`: will be fixed by apache#7734.
- [x] After fixing the `partcols1` hang, it appears that a number of later tests have issues as well.
- [x] Fix thread-safety bug in codegen fallback expression evaluation (apache#7759).

Author: Josh Rosen <[email protected]>

Closes apache#7564 from JoshRosen/unsafe-by-default and squashes the following commits:

83c0c56 [Josh Rosen] Merge remote-tracking branch 'origin/master' into unsafe-by-default
f4cc859 [Josh Rosen] Merge remote-tracking branch 'origin/master' into unsafe-by-default
963f567 [Josh Rosen] Reduce buffer size for R tests
d6986de [Josh Rosen] Lower page size in PySpark tests
013b9da [Josh Rosen] Also match TungstenProject in checkNumProjects
5d0b2d3 [Josh Rosen] Add task completion callback to avoid leak in limit after sort
ea250da [Josh Rosen] Disable unsafe Exchange path when RangePartitioning is used
715517b [Josh Rosen] Enable Unsafe by default

Author: JoshRosen

R/run-tests.sh

@@ -23,7 +23,7 @@ FAILED=0
 LOGFILE=$FWDIR/unit-tests.out
 rm -f $LOGFILE
 
-SPARK_TESTING=1 $FWDIR/../bin/sparkR --driver-java-options "-Dlog4j.configuration=file:$FWDIR/log4j.properties" $FWDIR/pkg/tests/run-all.R 2>&1 | tee -a $LOGFILE
+SPARK_TESTING=1 $FWDIR/../bin/sparkR --conf spark.buffer.pageSize=4m --driver-java-options "-Dlog4j.configuration=file:$FWDIR/log4j.properties" $FWDIR/pkg/tests/run-all.R 2>&1 | tee -a $LOGFILE
 FAILED=$((PIPESTATUS[0]||$FAILED))
 
 if [[ $FAILED != 0 ]]; then

core/src/main/java/org/apache/spark/util/collection/unsafe/sort/UnsafeExternalSorter.java

@@ -20,6 +20,9 @@
 import java.io.IOException;
 import java.util.LinkedList;
 
+import scala.runtime.AbstractFunction0;
+import scala.runtime.BoxedUnit;
+
 import com.google.common.annotations.VisibleForTesting;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
@@ -90,6 +93,17 @@ public UnsafeExternalSorter(
     this.fileBufferSizeBytes = (int) conf.getSizeAsKb("spark.shuffle.file.buffer", "32k") * 1024;
     this.pageSizeBytes = conf.getSizeAsBytes("spark.buffer.pageSize", "64m");
     initializeForWriting();
+
+    // Register a cleanup task with TaskContext to ensure that memory is guaranteed to be freed at
+    // the end of the task. This is necessary to avoid memory leaks in when the downstream operator
+    // does not fully consume the sorter's output (e.g. sort followed by limit).
+    taskContext.addOnCompleteCallback(new AbstractFunction0<BoxedUnit>() {
+      @Override
+      public BoxedUnit apply() {
+        freeMemory();
+        return null;
+      }
+    });
   }
 
   // TODO: metrics tracking + integration with shuffle write metrics

python/pyspark/java_gateway.py

@@ -52,7 +52,11 @@ def launch_gateway():
         script = "./bin/spark-submit.cmd" if on_windows else "./bin/spark-submit"
         submit_args = os.environ.get("PYSPARK_SUBMIT_ARGS", "pyspark-shell")
         if os.environ.get("SPARK_TESTING"):
-            submit_args = "--conf spark.ui.enabled=false " + submit_args
+            submit_args = ' '.join([
+                "--conf spark.ui.enabled=false",
+                "--conf spark.buffer.pageSize=4mb",
+                submit_args
+            ])
         command = [os.path.join(SPARK_HOME, script)] + shlex.split(submit_args)
 
         # Start a socket that will be used by PythonGatewayServer to communicate its port to us

sql/core/src/main/scala/org/apache/spark/sql/SQLConf.scala

@@ -229,7 +229,7 @@ private[spark] object SQLConf {
       " a specific query.")
 
   val UNSAFE_ENABLED = booleanConf("spark.sql.unsafe.enabled",
-    defaultValue = Some(false),
+    defaultValue = Some(true),
     doc = "When true, use the new optimized Tungsten physical execution backend.")
 
   val DIALECT = stringConf(

sql/core/src/main/scala/org/apache/spark/sql/execution/Exchange.scala

@@ -47,7 +47,12 @@ case class Exchange(newPartitioning: Partitioning, child: SparkPlan) extends Una
 
   override def canProcessSafeRows: Boolean = true
 
-  override def canProcessUnsafeRows: Boolean = true
+  override def canProcessUnsafeRows: Boolean = {
+    // Do not use the Unsafe path if we are using a RangePartitioning, since this may lead to
+    // an interpreted RowOrdering being applied to an UnsafeRow, which will lead to
+    // ClassCastExceptions at runtime. This check can be removed after SPARK-9054 is fixed.
+    !newPartitioning.isInstanceOf[RangePartitioning]
+  }
 
   /**
    * Determines whether records must be defensively copied before being sent to the shuffle.

sql/core/src/test/scala/org/apache/spark/sql/ColumnExpressionSuite.scala

@@ -19,7 +19,7 @@ package org.apache.spark.sql
 
 import org.scalatest.Matchers._
 
-import org.apache.spark.sql.execution.Project
+import org.apache.spark.sql.execution.{Project, TungstenProject}
 import org.apache.spark.sql.functions._
 import org.apache.spark.sql.types._
 import org.apache.spark.sql.test.SQLTestUtils
@@ -538,6 +538,7 @@ class ColumnExpressionSuite extends QueryTest with SQLTestUtils {
     def checkNumProjects(df: DataFrame, expectedNumProjects: Int): Unit = {
       val projects = df.queryExecution.executedPlan.collect {
         case project: Project => project
+        case tungstenProject: TungstenProject => tungstenProject
       }
       assert(projects.size === expectedNumProjects)
     }

sql/core/src/test/scala/org/apache/spark/sql/execution/UnsafeExternalSortSuite.scala

@@ -36,10 +36,7 @@ class UnsafeExternalSortSuite extends SparkPlanTest with BeforeAndAfterAll {
     TestSQLContext.conf.setConf(SQLConf.CODEGEN_ENABLED, SQLConf.CODEGEN_ENABLED.defaultValue.get)
   }
 
-  ignore("sort followed by limit should not leak memory") {
-    // TODO: this test is going to fail until we implement a proper iterator interface
-    // with a close() method.
-    TestSQLContext.sparkContext.conf.set("spark.unsafe.exceptionOnMemoryLeak", "false")
+  test("sort followed by limit") {
     checkThatPlansAgree(
       (1 to 100).map(v => Tuple1(v)).toDF("a"),
       (child: SparkPlan) => Limit(10, UnsafeExternalSort('a.asc :: Nil, true, child)),
@@ -48,21 +45,6 @@ class UnsafeExternalSortSuite extends SparkPlanTest with BeforeAndAfterAll {
     )
   }
 
-  test("sort followed by limit") {
-    TestSQLContext.sparkContext.conf.set("spark.unsafe.exceptionOnMemoryLeak", "false")
-    try {
-      checkThatPlansAgree(
-        (1 to 100).map(v => Tuple1(v)).toDF("a"),
-        (child: SparkPlan) => Limit(10, UnsafeExternalSort('a.asc :: Nil, true, child)),
-        (child: SparkPlan) => Limit(10, Sort('a.asc :: Nil, global = true, child)),
-        sortAnswers = false
-      )
-    } finally {
-      TestSQLContext.sparkContext.conf.set("spark.unsafe.exceptionOnMemoryLeak", "false")
-
-    }
-  }
-
   test("sorting does not crash for large inputs") {
     val sortOrder = 'a.asc :: Nil
     val stringLength = 1024 * 1024 * 2