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Fix path to nextflow config on headnode
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pubweb/helpers/preprocess_dataset.py

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -113,7 +113,7 @@ def remove_param(self, name: str, force=False):
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self.logger.info("Saving parameters")
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self._write_json(self.params, "nextflow.json")
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116-
def update_compute(self, from_str, to_str, fp="nextflow.config"):
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def update_compute(self, from_str, to_str, fp="nextflow-override.config"):
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"""Replace all instances of a text string in the compute config file."""
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assert os.path.exists(fp), f"File does not exist: {fp}"

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